Wall clock time and date at job start Tue Mar 31 2020 22:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46962 * 2 1 4 4 C 1.42901 * 113.99909 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47050 * 29.99481 * 4 3 2 6 6 C 1.50696 * 109.46778 * 269.99868 * 4 3 2 7 7 O 1.21277 * 120.00202 * 351.48203 * 6 4 3 8 8 N 1.34774 * 119.99803 * 171.48939 * 6 4 3 9 9 C 1.47874 * 126.94534 * 354.94007 * 8 6 4 10 10 C 1.56016 * 105.10298 * 182.02550 * 9 8 6 11 11 H 1.09009 * 116.89238 * 159.21071 * 10 9 8 12 12 C 1.57076 * 99.61063 * 32.80833 * 10 9 8 13 13 C 1.49292 * 126.94833 * 174.97065 * 8 6 4 14 14 H 1.09007 * 116.78294 * 16.28906 * 13 8 6 15 15 C 1.56008 * 104.09403 * 246.67542 * 13 8 6 16 16 N 1.47871 * 105.10535 * 288.76257 * 15 13 8 17 17 C 1.36933 * 126.94518 * 181.98152 * 16 15 13 18 18 H 1.07999 * 119.99983 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00303 * 0.02562 * 17 16 15 20 20 N 1.31622 * 119.99454 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00198 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47291 * 60.00168 * 21 19 17 23 23 H 1.48503 * 109.47141 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47090 * 300.00040 * 21 19 17 25 25 C 1.53001 * 109.47144 * 149.99711 * 4 3 2 26 26 C 1.53175 * 109.54147 * 54.07209 * 25 4 3 27 27 C 1.53105 * 109.15815 * 183.23689 * 26 25 4 28 28 O 1.42907 * 109.48154 * 57.47958 * 27 26 25 29 29 C 1.42909 * 114.10143 * 298.88797 * 28 27 26 30 30 C 1.53095 * 109.41304 * 61.15463 * 29 28 27 31 31 H 1.09002 * 109.46660 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47236 * 300.00128 * 1 2 3 33 33 H 1.09000 * 109.46816 * 60.00712 * 1 2 3 34 34 H 1.09000 * 109.47171 * 239.99486 * 2 1 3 35 35 H 1.09002 * 109.46834 * 119.99824 * 2 1 3 36 36 H 1.09000 * 110.31093 * 63.12084 * 9 8 6 37 37 H 1.09001 * 110.31481 * 300.93744 * 9 8 6 38 38 H 1.09008 * 112.36827 * 64.26978 * 12 10 9 39 39 H 1.08994 * 112.37547 * 191.71021 * 12 10 9 40 40 H 1.09001 * 110.31843 * 169.86017 * 15 13 8 41 41 H 1.09000 * 110.40581 * 47.71607 * 15 13 8 42 42 H 0.97007 * 119.99314 * 179.97438 * 20 19 17 43 43 H 1.08991 * 109.54443 * 174.25013 * 25 4 3 44 44 H 1.09003 * 109.52941 * 303.06133 * 26 25 4 45 45 H 1.09005 * 109.52161 * 63.24869 * 26 25 4 46 46 H 1.08995 * 109.41028 * 297.49988 * 27 26 25 47 47 H 1.09000 * 109.48599 * 177.50274 * 27 26 25 48 48 H 1.09007 * 109.47832 * 301.17979 * 29 28 27 49 49 H 1.08987 * 109.48308 * 181.14248 * 29 28 27 50 50 H 1.08994 * 109.51927 * 182.48747 * 30 29 28 51 51 H 1.09000 * 109.56861 * 62.33165 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8636 0.6015 -0.5129 6 6 3.9310 1.5001 1.4216 7 8 3.1435 1.5939 2.3392 8 7 5.2533 1.4316 1.6728 9 6 6.3348 1.2120 0.6884 10 6 7.6481 1.1715 1.5297 11 1 8.5104 0.6840 1.0745 12 6 7.0939 0.5260 2.8501 13 6 5.9224 1.5615 3.0010 14 1 5.2896 1.4551 3.8822 15 6 6.7330 2.8898 2.8898 16 7 7.8454 2.5860 1.9641 17 6 8.8525 3.4315 1.5822 18 1 9.6125 3.0904 0.8949 19 6 8.8968 4.7272 2.0786 20 7 7.9709 5.1427 2.9167 21 14 10.2704 5.8807 1.5571 22 1 10.2318 6.0622 0.0837 23 1 10.0911 7.1964 2.2221 24 1 11.5797 5.3010 1.9503 25 6 3.8410 2.7456 -0.7207 26 6 3.1164 3.9396 -0.0917 27 6 3.4701 5.2093 -0.8707 28 8 3.1144 5.0402 -2.2445 29 6 3.7981 3.9679 -2.8965 30 6 3.4560 2.6481 -2.2002 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 6.3685 2.0342 -0.0264 37 1 6.1880 0.2645 0.1700 38 1 6.7317 -0.4904 2.6947 39 1 7.8076 0.5844 3.6718 40 1 7.1216 3.1789 3.8663 41 1 6.1074 3.6838 2.4820 42 1 8.0021 6.0480 3.2638 43 1 4.9183 2.8853 -0.6328 44 1 2.0396 3.7758 -0.1340 45 1 3.4286 4.0491 0.9469 46 1 4.5411 5.3955 -0.7928 47 1 2.9226 6.0553 -0.4551 48 1 4.8736 4.1379 -2.8450 49 1 3.4871 3.9197 -3.9400 50 1 4.0108 1.8350 -2.6681 51 1 2.3865 2.4564 -2.2864 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267710968.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:08 Heat of formation + Delta-G solvation = -92.999549 kcal Electronic energy + Delta-G solvation = -32506.999510 eV Core-core repulsion = 28407.315967 eV Total energy + Delta-G solvation = -4099.683543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91856 -40.62268 -39.55631 -38.21023 -35.64958 -35.19746 -33.25460 -32.10120 -32.01329 -30.91722 -30.25286 -28.68363 -26.98627 -25.54793 -24.63710 -24.38272 -23.71336 -22.10455 -21.47013 -21.07648 -20.13507 -18.98367 -18.15910 -17.86914 -17.40165 -17.20167 -16.92946 -16.56025 -16.19469 -15.96028 -15.82941 -15.73478 -15.46918 -15.02279 -14.76403 -14.65719 -14.22021 -13.84431 -13.59398 -13.40813 -13.35932 -13.25714 -13.14984 -12.94810 -12.86638 -12.80606 -12.67346 -12.45904 -12.29906 -12.16970 -12.15007 -12.10351 -12.03454 -11.81842 -11.75858 -11.52417 -11.31264 -11.21875 -10.76463 -10.60165 -10.19222 -9.54328 -8.89964 -7.83083 -5.18633 1.47465 1.49198 1.52030 1.55616 1.89046 2.49064 2.64973 2.90826 3.30610 3.35135 3.46039 3.54167 3.66287 3.76137 3.88407 3.89422 3.98537 4.03642 4.08726 4.18023 4.20220 4.27168 4.28751 4.38346 4.47239 4.54810 4.57237 4.62253 4.67262 4.72215 4.73884 4.79412 4.85379 4.88080 4.95245 5.00482 5.03551 5.07078 5.10297 5.13503 5.23208 5.25899 5.37972 5.45845 5.52694 5.66081 6.08704 6.10268 6.20123 6.64491 7.03704 7.14557 7.72425 8.42735 9.27537 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.004583 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.908094 B = 6107.838885 C = 7659.095435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 O -0.369 6.369 4 C 0.099 3.901 5 H 0.114 0.886 6 C 0.500 3.500 7 O -0.583 6.583 8 N -0.605 5.605 9 C 0.086 3.914 10 C 0.136 3.864 11 H 0.138 0.862 12 C -0.130 4.130 13 C 0.097 3.903 14 H 0.107 0.893 15 C 0.191 3.809 16 N -0.614 5.614 17 C -0.229 4.229 18 H 0.096 0.904 19 C -0.067 4.067 20 N -0.955 5.955 21 Si 0.972 3.028 22 H -0.276 1.276 23 H -0.305 1.305 24 H -0.275 1.275 25 C -0.079 4.079 26 C -0.135 4.135 27 C 0.068 3.932 28 O -0.396 6.396 29 C 0.053 3.947 30 C -0.135 4.135 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.014 0.986 41 H -0.003 1.003 42 H 0.242 0.758 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.120 0.880 50 H 0.103 0.897 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -13.422 -12.281 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.287 6.287 4 C 0.037 3.963 5 H 0.131 0.869 6 C 0.289 3.711 7 O -0.464 6.464 8 N -0.340 5.340 9 C -0.038 4.038 10 C 0.030 3.970 11 H 0.155 0.845 12 C -0.169 4.169 13 C -0.006 4.006 14 H 0.125 0.875 15 C 0.065 3.935 16 N -0.338 5.338 17 C -0.357 4.357 18 H 0.114 0.886 19 C -0.260 4.260 20 N -0.604 5.604 21 Si 0.801 3.199 22 H -0.202 1.202 23 H -0.232 1.232 24 H -0.201 1.201 25 C -0.097 4.097 26 C -0.173 4.173 27 C -0.009 4.009 28 O -0.315 6.315 29 C -0.023 4.023 30 C -0.172 4.172 31 H 0.112 0.888 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.032 0.968 41 H 0.015 0.985 42 H 0.051 0.949 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.115 0.885 48 H 0.068 0.932 49 H 0.138 0.862 50 H 0.122 0.878 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.850 -12.853 -11.912 19.632 hybrid contribution 0.951 1.177 1.004 1.816 sum -7.899 -11.675 -10.908 17.824 Atomic orbital electron populations 1.21712 0.92530 1.03424 1.02485 1.22784 0.96812 0.82758 1.00489 1.87995 1.18318 1.28126 1.94231 1.21910 0.83355 1.00775 0.90220 0.86892 1.21606 0.80712 0.75801 0.92963 1.90639 1.55447 1.52190 1.48082 1.49329 1.05035 1.69587 1.10000 1.23358 0.87501 1.01394 0.91570 1.23594 0.95129 0.84757 0.93520 0.84459 1.24066 0.95979 0.97613 0.99253 1.24119 0.92568 0.97296 0.86665 0.87547 1.21464 0.87745 0.91535 0.92749 1.45454 1.27292 1.09372 1.51722 1.19473 1.02433 0.92243 1.21601 0.88597 1.25591 1.00847 0.99281 1.00250 1.70157 1.36584 1.17141 1.36530 0.85244 0.79254 0.77718 0.77682 1.20175 1.23239 1.20071 1.21303 1.00067 0.91897 0.96478 1.21951 1.01589 0.95669 0.98071 1.22462 0.99283 0.97327 0.81830 1.87878 1.67254 1.53085 1.23308 1.22825 0.96435 0.85512 0.97564 1.22160 1.03536 0.99255 0.92248 0.88784 0.93667 0.91319 0.90521 0.94768 0.92056 0.87866 0.87992 0.90289 0.96794 0.98477 0.94864 0.90049 0.90723 0.94631 0.94280 0.88504 0.93183 0.86173 0.87813 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 1.02 6.46 71.98 0.46 1.49 16 3 O -0.37 -10.45 8.09 -130.08 -1.05 -11.50 16 4 C 0.10 2.71 1.64 29.85 0.05 2.76 16 5 H 0.11 2.29 7.70 -2.39 -0.02 2.27 16 6 C 0.50 18.00 6.27 87.66 0.55 18.55 16 7 O -0.58 -25.91 16.88 15.88 0.27 -25.64 16 8 N -0.60 -20.97 2.95 -768.33 -2.26 -23.23 16 9 C 0.09 2.47 5.61 87.16 0.49 2.96 16 10 C 0.14 4.40 5.53 46.93 0.26 4.66 16 11 H 0.14 3.63 8.14 -2.38 -0.02 3.61 16 12 C -0.13 -3.93 6.81 33.46 0.23 -3.70 16 13 C 0.10 3.72 5.24 46.93 0.25 3.96 16 14 H 0.11 4.18 8.07 -2.38 -0.02 4.16 16 15 C 0.19 9.37 4.76 87.16 0.42 9.79 16 16 N -0.61 -28.26 3.02 -648.57 -1.96 -30.22 16 17 C -0.23 -11.69 10.38 84.04 0.87 -10.82 16 18 H 0.10 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.66 5.49 84.86 0.47 -3.20 16 20 N -0.95 -57.27 10.56 21.65 0.23 -57.04 16 21 Si 0.97 44.41 29.55 68.60 2.03 46.43 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 C -0.08 -2.17 2.03 -10.68 -0.02 -2.19 16 26 C -0.13 -4.48 5.04 30.69 0.15 -4.32 16 27 C 0.07 2.12 6.84 72.02 0.49 2.61 16 28 O -0.40 -11.45 10.77 -148.98 -1.60 -13.06 16 29 C 0.05 1.15 6.84 72.01 0.49 1.64 16 30 C -0.13 -2.74 5.36 30.69 0.16 -2.57 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.17 8.09 -2.39 -0.02 1.15 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 1.97 6.11 -2.39 -0.01 1.95 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.01 0.78 7.46 -2.39 -0.02 0.76 16 41 H 0.00 -0.17 7.67 -2.39 -0.02 -0.19 16 42 H 0.24 14.48 8.31 -92.70 -0.77 13.71 16 43 H 0.08 2.49 5.67 -2.39 -0.01 2.47 16 44 H 0.07 2.53 7.45 -2.39 -0.02 2.51 16 45 H 0.03 1.43 7.53 -2.38 -0.02 1.41 16 46 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 48 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 50 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.08 1.68 7.77 -2.39 -0.02 1.66 16 Total: -1.00 -74.05 393.20 2.61 -71.44 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.90 Total: 23.11 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.06 Total: 19.71 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -3.99 Total: -110.49 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.39 Total: -50.20 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.05 2.61 -71.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267710968.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.560 kcal (2) G-P(sol) polarization free energy of solvation -74.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds