Wall clock time and date at job start Tue Mar 31 2020 21:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42905 * 109.47064 * 2 1 4 4 C 1.42900 * 114.00052 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47088 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47375 * 65.46146 * 5 4 3 7 7 C 1.33125 * 117.26887 * 84.49487 * 6 5 4 8 8 O 1.21279 * 118.57709 * 359.84423 * 7 6 5 9 9 C 1.50306 * 122.84562 * 179.81608 * 7 6 5 10 10 C 1.52983 * 109.18594 * 21.48925 * 9 7 6 11 11 C 1.52317 * 109.48307 * 308.11738 * 10 9 7 12 12 H 1.09004 * 109.81421 * 185.09102 * 11 10 9 13 13 C 1.45414 * 117.26183 * 264.47489 * 6 5 4 14 14 H 1.09003 * 111.33017 * 63.73094 * 13 6 5 15 15 C 1.55418 * 108.17176 * 300.84354 * 13 6 5 16 16 C 1.54332 * 103.01283 * 277.26754 * 15 13 6 17 17 N 1.47146 * 107.36402 * 337.77079 * 16 15 13 18 18 C 1.34775 * 125.72972 * 179.73062 * 17 16 15 19 19 O 1.21285 * 120.00156 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00481 * 0.02562 * 18 17 16 21 21 C 1.52991 * 109.47574 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.47520 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99497 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00277 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99881 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99831 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46958 * 90.00209 * 26 24 22 28 28 H 1.48503 * 109.46934 * 209.99983 * 26 24 22 29 29 H 1.48497 * 109.47538 * 329.99658 * 26 24 22 30 30 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47833 * 300.00162 * 1 2 3 32 32 H 1.09011 * 109.47174 * 60.00191 * 1 2 3 33 33 H 1.09000 * 109.47833 * 239.99838 * 2 1 3 34 34 H 1.09004 * 109.47255 * 119.99444 * 2 1 3 35 35 H 1.08998 * 109.47595 * 59.99627 * 4 3 2 36 36 H 1.09006 * 109.47024 * 299.99503 * 4 3 2 37 37 H 1.08997 * 109.46958 * 305.45717 * 5 4 3 38 38 H 1.09003 * 109.47398 * 185.45780 * 5 4 3 39 39 H 1.09007 * 109.51333 * 141.39779 * 9 7 6 40 40 H 1.08999 * 109.52413 * 261.51349 * 9 7 6 41 41 H 1.08997 * 109.46861 * 68.12183 * 10 9 7 42 42 H 1.09004 * 109.46390 * 188.11441 * 10 9 7 43 43 H 1.09002 * 110.70492 * 158.88300 * 15 13 6 44 44 H 1.09002 * 110.70568 * 35.65047 * 15 13 6 45 45 H 1.09000 * 109.88781 * 97.25340 * 16 15 13 46 46 H 1.08996 * 109.89259 * 218.28511 * 16 15 13 47 47 H 1.09000 * 109.47119 * 300.01178 * 20 18 17 48 48 H 1.09008 * 109.46616 * 60.00194 * 20 18 17 49 49 H 1.09000 * 109.47863 * 300.00727 * 21 20 18 50 50 H 1.09008 * 109.46987 * 60.00425 * 21 20 18 51 51 H 0.97001 * 120.00202 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9384 0.0012 6 7 3.3964 3.5578 1.2577 7 6 4.2102 3.4400 2.3046 8 8 5.2497 2.8309 2.1658 9 6 3.8967 4.0295 3.6512 10 6 2.3883 4.2605 3.7601 11 6 1.9075 5.0545 2.5525 12 1 0.8517 5.2999 2.6682 13 6 2.1178 4.2503 1.2565 14 1 1.2948 3.5630 1.0605 15 6 2.1808 5.3828 0.1940 16 6 2.8837 6.5300 0.9500 17 7 2.6947 6.2882 2.3891 18 6 3.1640 7.0644 3.3859 19 8 2.9462 6.7656 4.5411 20 6 3.9593 8.3037 3.0654 21 6 4.3683 8.9978 4.3659 22 6 5.1631 10.2375 4.0453 23 1 5.3567 10.5037 3.0167 24 6 5.6431 11.0316 5.0651 25 7 5.4078 10.7070 6.3177 26 14 6.6276 12.5685 4.6676 27 1 5.7065 13.7257 4.5346 28 1 7.5979 12.8312 5.7606 29 1 7.3611 12.3703 3.3917 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8340 0.9765 -0.8891 36 1 3.8332 0.9768 0.8909 37 1 3.3433 3.4434 -0.8359 38 1 4.9074 3.0258 -0.0961 39 1 4.2172 3.3413 4.4335 40 1 4.4204 4.9787 3.7642 41 1 1.8749 3.2995 3.7909 42 1 2.1711 4.8178 4.6714 43 1 1.1778 5.6804 -0.1120 44 1 2.7709 5.0704 -0.6676 45 1 3.9472 6.5345 0.7113 46 1 2.4375 7.4850 0.6728 47 1 4.8519 8.0274 2.5041 48 1 3.3499 8.9820 2.4680 49 1 3.4755 9.2741 4.9269 50 1 4.9775 8.3197 4.9637 51 1 5.7457 11.2655 7.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269991188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:12 Heat of formation + Delta-G solvation = -115.666451 kcal Electronic energy + Delta-G solvation = -31319.240982 eV Core-core repulsion = 27218.574528 eV Total energy + Delta-G solvation = -4100.666454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44771 -39.27649 -38.20991 -37.46449 -34.94178 -34.03837 -33.33506 -31.96732 -31.22309 -30.43897 -28.86686 -28.52178 -25.80564 -24.34042 -23.90936 -23.14017 -22.38778 -21.88898 -20.99663 -18.87623 -17.99471 -17.51247 -17.27429 -16.83880 -16.30190 -16.24258 -15.97814 -15.74104 -15.35168 -14.77792 -14.46880 -14.41937 -14.16206 -14.10359 -13.75200 -13.44025 -13.26393 -13.08778 -12.85129 -12.62183 -12.45168 -12.26127 -12.15142 -12.09220 -11.77499 -11.74567 -11.63572 -11.30508 -11.22652 -11.13484 -11.08723 -10.94920 -10.92111 -10.59601 -9.98158 -9.95855 -9.68231 -9.56562 -9.14187 -8.98170 -8.82712 -8.46532 -8.31511 -5.96033 -4.00305 2.64652 2.82613 3.15287 3.17671 3.33525 3.35342 3.39866 3.42588 4.06567 4.31588 4.47587 4.53400 4.66082 4.69595 4.71697 4.83854 4.89109 4.95537 4.99056 5.01166 5.05866 5.08451 5.22447 5.32576 5.35942 5.39065 5.41444 5.47766 5.52656 5.53498 5.62666 5.67038 5.72154 5.73554 5.80663 5.88426 6.08897 6.10870 6.22299 6.23082 6.33223 6.55661 6.84464 6.87458 7.38830 7.73986 7.79484 7.85376 8.06514 8.13576 8.38161 8.70001 9.07722 9.63245 11.14862 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.002541 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.224011 B =11015.122501 C =11019.936193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.386 6.386 4 C 0.049 3.951 5 C 0.107 3.893 6 N -0.587 5.587 7 C 0.525 3.475 8 O -0.559 6.559 9 C -0.128 4.128 10 C -0.131 4.131 11 C 0.131 3.869 12 H 0.088 0.912 13 C 0.139 3.861 14 H 0.110 0.890 15 C -0.147 4.147 16 C 0.105 3.895 17 N -0.626 5.626 18 C 0.529 3.471 19 O -0.526 6.526 20 C -0.125 4.125 21 C 0.038 3.962 22 C -0.527 4.527 23 H 0.055 0.945 24 C 0.058 3.942 25 N -0.889 5.889 26 Si 0.892 3.108 27 H -0.281 1.281 28 H -0.286 1.286 29 H -0.274 1.274 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.024 0.976 50 H 0.023 0.977 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -20.510 -17.089 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.306 6.306 4 C -0.029 4.029 5 C -0.016 4.016 6 N -0.319 5.319 7 C 0.314 3.686 8 O -0.438 6.438 9 C -0.167 4.167 10 C -0.169 4.169 11 C 0.027 3.973 12 H 0.106 0.894 13 C 0.034 3.966 14 H 0.128 0.872 15 C -0.185 4.185 16 C -0.019 4.019 17 N -0.364 5.364 18 C 0.321 3.679 19 O -0.401 6.401 20 C -0.165 4.165 21 C 0.001 3.999 22 C -0.565 4.565 23 H 0.073 0.927 24 C -0.144 4.144 25 N -0.528 5.528 26 Si 0.720 3.280 27 H -0.207 1.207 28 H -0.212 1.212 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.042 0.958 50 H 0.042 0.958 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.837 -20.673 -16.215 28.421 hybrid contribution 0.681 0.651 -0.331 0.998 sum -10.157 -20.022 -16.546 27.889 Atomic orbital electron populations 1.21733 0.93703 1.02201 1.03113 1.22428 0.95537 0.83995 0.99917 1.87858 1.21063 1.26245 1.95450 1.22915 0.81369 0.97752 1.00861 1.21601 1.01574 0.91304 0.87078 1.47004 1.20091 1.54077 1.10722 1.20269 0.82796 0.79139 0.86352 1.90687 1.25340 1.43081 1.84644 1.21571 0.98078 1.03422 0.93674 1.21710 0.94775 1.00185 1.00195 1.21623 0.96583 0.84993 0.94067 0.89428 1.22096 0.86288 0.92824 0.95385 0.87187 1.23236 1.02226 0.94828 0.98245 1.21948 1.00756 0.98560 0.80624 1.48789 1.55912 1.25236 1.06455 1.21278 0.78487 0.84394 0.83790 1.90640 1.57701 1.72143 1.19579 1.21866 0.98208 0.92421 1.03960 1.18899 0.97017 0.94345 0.89658 1.21205 1.34139 1.08477 0.92688 0.92680 1.25017 0.96333 0.97950 0.95055 1.69994 1.45700 1.38439 0.98644 0.86596 0.79972 0.83440 0.77973 1.20676 1.21211 1.19907 0.91259 0.91802 0.91877 0.93618 0.93616 0.92580 0.92649 0.89274 0.88301 0.88452 0.87906 0.91129 0.87695 0.89325 0.89366 0.91546 0.90922 0.90480 0.90337 0.95809 0.95823 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.15 0.38 -0.46 16 2 C 0.06 0.40 6.66 37.15 0.25 0.65 16 3 O -0.39 -3.38 9.49 -35.23 -0.33 -3.72 16 4 C 0.05 0.43 6.18 37.16 0.23 0.66 16 5 C 0.11 0.98 5.18 -4.04 -0.02 0.96 16 6 N -0.59 -6.40 2.47 -165.50 -0.41 -6.81 16 7 C 0.52 7.52 7.33 -11.91 -0.09 7.43 16 8 O -0.56 -9.65 16.00 5.56 0.09 -9.56 16 9 C -0.13 -1.87 5.60 -28.08 -0.16 -2.02 16 10 C -0.13 -1.67 4.95 -27.09 -0.13 -1.80 16 11 C 0.13 1.51 3.28 -67.37 -0.22 1.29 16 12 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 13 C 0.14 1.26 3.51 -66.73 -0.23 1.03 16 14 H 0.11 0.89 7.48 -51.93 -0.39 0.50 16 15 C -0.15 -1.11 6.35 -24.75 -0.16 -1.26 16 16 C 0.10 1.10 6.45 -2.99 -0.02 1.09 16 17 N -0.63 -8.66 2.83 -164.04 -0.46 -9.12 16 18 C 0.53 9.84 6.37 -10.99 -0.07 9.77 16 19 O -0.53 -11.48 13.29 5.55 0.07 -11.41 16 20 C -0.12 -2.53 4.84 -27.89 -0.13 -2.66 16 21 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 22 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 23 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 26 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.60 7.84 -51.93 -0.41 0.19 16 37 H 0.09 0.62 5.96 -51.93 -0.31 0.31 16 38 H 0.10 1.01 7.32 -51.93 -0.38 0.63 16 39 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.10 1.80 6.15 -51.93 -0.32 1.48 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 1.60 6.30 -51.93 -0.33 1.27 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.57 5.92 -51.93 -0.31 0.26 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.08 1.47 8.14 -51.92 -0.42 1.04 16 49 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 50 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 51 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -35.08 397.26 -8.99 -44.07 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.74 Total: -1.40 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -0.91 Total: 1.88 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.14 Total: -42.60 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.17 Total: -24.68 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.08 -8.99 -44.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.596 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds