Wall clock time and date at job start Tue Mar 31 2020 21:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42905 * 109.47064 * 2 1 4 4 C 1.42900 * 114.00052 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47088 * 180.02562 * 4 3 2 6 6 N 1.46502 * 109.47375 * 65.46146 * 5 4 3 7 7 C 1.33125 * 117.26887 * 84.49487 * 6 5 4 8 8 O 1.21279 * 118.57709 * 359.84423 * 7 6 5 9 9 C 1.50306 * 122.84562 * 179.81608 * 7 6 5 10 10 C 1.52983 * 109.18594 * 21.48925 * 9 7 6 11 11 C 1.52317 * 109.48307 * 308.11738 * 10 9 7 12 12 H 1.09004 * 109.81421 * 185.09102 * 11 10 9 13 13 C 1.45414 * 117.26183 * 264.47489 * 6 5 4 14 14 H 1.09003 * 111.33017 * 63.73094 * 13 6 5 15 15 C 1.55418 * 108.17176 * 300.84354 * 13 6 5 16 16 C 1.54332 * 103.01283 * 277.26754 * 15 13 6 17 17 N 1.47146 * 107.36402 * 337.77079 * 16 15 13 18 18 C 1.34775 * 125.72972 * 179.73062 * 17 16 15 19 19 O 1.21285 * 120.00156 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00481 * 0.02562 * 18 17 16 21 21 C 1.52991 * 109.47574 * 179.97438 * 20 18 17 22 22 C 1.50706 * 109.47520 * 180.02562 * 21 20 18 23 23 H 1.08006 * 119.99497 * 0.02562 * 22 21 20 24 24 C 1.37874 * 120.00277 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99881 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99831 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46958 * 90.00209 * 26 24 22 28 28 H 1.48503 * 109.46934 * 209.99983 * 26 24 22 29 29 H 1.48497 * 109.47538 * 329.99658 * 26 24 22 30 30 H 1.09000 * 109.47235 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47833 * 300.00162 * 1 2 3 32 32 H 1.09011 * 109.47174 * 60.00191 * 1 2 3 33 33 H 1.09000 * 109.47833 * 239.99838 * 2 1 3 34 34 H 1.09004 * 109.47255 * 119.99444 * 2 1 3 35 35 H 1.08998 * 109.47595 * 59.99627 * 4 3 2 36 36 H 1.09006 * 109.47024 * 299.99503 * 4 3 2 37 37 H 1.08997 * 109.46958 * 305.45717 * 5 4 3 38 38 H 1.09003 * 109.47398 * 185.45780 * 5 4 3 39 39 H 1.09007 * 109.51333 * 141.39779 * 9 7 6 40 40 H 1.08999 * 109.52413 * 261.51349 * 9 7 6 41 41 H 1.08997 * 109.46861 * 68.12183 * 10 9 7 42 42 H 1.09004 * 109.46390 * 188.11441 * 10 9 7 43 43 H 1.09002 * 110.70492 * 158.88300 * 15 13 6 44 44 H 1.09002 * 110.70568 * 35.65047 * 15 13 6 45 45 H 1.09000 * 109.88781 * 97.25340 * 16 15 13 46 46 H 1.08996 * 109.89259 * 218.28511 * 16 15 13 47 47 H 1.09000 * 109.47119 * 300.01178 * 20 18 17 48 48 H 1.09008 * 109.46616 * 60.00194 * 20 18 17 49 49 H 1.09000 * 109.47863 * 300.00727 * 21 20 18 50 50 H 1.09008 * 109.46987 * 60.00425 * 21 20 18 51 51 H 0.97001 * 120.00202 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9384 0.0012 6 7 3.3964 3.5578 1.2577 7 6 4.2102 3.4400 2.3046 8 8 5.2497 2.8309 2.1658 9 6 3.8967 4.0295 3.6512 10 6 2.3883 4.2605 3.7601 11 6 1.9075 5.0545 2.5525 12 1 0.8517 5.2999 2.6682 13 6 2.1178 4.2503 1.2565 14 1 1.2948 3.5630 1.0605 15 6 2.1808 5.3828 0.1940 16 6 2.8837 6.5300 0.9500 17 7 2.6947 6.2882 2.3891 18 6 3.1640 7.0644 3.3859 19 8 2.9462 6.7656 4.5411 20 6 3.9593 8.3037 3.0654 21 6 4.3683 8.9978 4.3659 22 6 5.1631 10.2375 4.0453 23 1 5.3567 10.5037 3.0167 24 6 5.6431 11.0316 5.0651 25 7 5.4078 10.7070 6.3177 26 14 6.6276 12.5685 4.6676 27 1 5.7065 13.7257 4.5346 28 1 7.5979 12.8312 5.7606 29 1 7.3611 12.3703 3.3917 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.8340 0.9765 -0.8891 36 1 3.8332 0.9768 0.8909 37 1 3.3433 3.4434 -0.8359 38 1 4.9074 3.0258 -0.0961 39 1 4.2172 3.3413 4.4335 40 1 4.4204 4.9787 3.7642 41 1 1.8749 3.2995 3.7909 42 1 2.1711 4.8178 4.6714 43 1 1.1778 5.6804 -0.1120 44 1 2.7709 5.0704 -0.6676 45 1 3.9472 6.5345 0.7113 46 1 2.4375 7.4850 0.6728 47 1 4.8519 8.0274 2.5041 48 1 3.3499 8.9820 2.4680 49 1 3.4755 9.2741 4.9269 50 1 4.9775 8.3197 4.9637 51 1 5.7457 11.2655 7.0352 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269991188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:11 Heat of formation + Delta-G solvation = -138.888089 kcal Electronic energy + Delta-G solvation = -31320.247948 eV Core-core repulsion = 27218.574528 eV Total energy + Delta-G solvation = -4101.673420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47659 -40.52466 -38.90124 -38.68487 -35.95143 -35.64294 -34.92168 -33.03130 -32.56203 -31.56535 -29.70201 -29.50123 -27.71138 -25.41428 -24.93092 -23.78092 -23.62907 -22.79569 -22.41615 -20.11955 -19.19617 -18.67006 -18.36661 -18.05467 -17.42732 -17.20953 -17.09954 -16.83222 -16.51154 -16.35912 -16.04060 -15.41735 -15.25227 -15.02385 -14.82047 -14.44105 -14.32035 -14.12538 -13.98113 -13.83216 -13.66805 -13.54271 -13.22388 -13.14568 -12.85688 -12.81890 -12.59694 -12.52776 -12.43520 -12.27246 -12.23446 -12.01827 -12.00047 -11.92570 -11.81637 -11.62867 -11.30900 -10.88699 -10.57835 -10.54330 -10.40306 -9.77108 -9.61081 -8.19345 -6.33330 1.40353 1.43302 1.51500 1.54076 1.70487 1.92939 1.99070 2.41874 2.74978 3.13512 3.18940 3.48777 3.53606 3.77077 3.94111 3.99297 4.06566 4.11836 4.16830 4.22416 4.23560 4.33506 4.36051 4.44980 4.46615 4.49943 4.53470 4.60419 4.63345 4.73210 4.76172 4.80372 4.86134 4.89969 4.97430 5.00704 5.07638 5.09191 5.10734 5.14588 5.32931 5.44417 5.46054 5.53195 5.61597 5.83454 6.16347 6.22969 6.39973 6.50946 6.84943 7.05650 7.28351 7.36950 8.93155 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.002541 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.224011 B =11015.122501 C =11019.936193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.052 3.948 3 O -0.393 6.393 4 C 0.054 3.946 5 C 0.105 3.895 6 N -0.577 5.577 7 C 0.524 3.476 8 O -0.596 6.596 9 C -0.128 4.128 10 C -0.124 4.124 11 C 0.124 3.876 12 H 0.110 0.890 13 C 0.143 3.857 14 H 0.137 0.863 15 C -0.130 4.130 16 C 0.091 3.909 17 N -0.618 5.618 18 C 0.528 3.472 19 O -0.571 6.571 20 C -0.113 4.113 21 C 0.047 3.953 22 C -0.544 4.544 23 H 0.073 0.927 24 C -0.006 4.006 25 N -0.936 5.936 26 Si 0.973 3.027 27 H -0.269 1.269 28 H -0.286 1.286 29 H -0.257 1.257 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.028 0.972 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.101 0.899 49 H -0.015 1.015 50 H -0.020 1.020 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 -20.586 -21.267 32.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.313 6.313 4 C -0.023 4.023 5 C -0.017 4.017 6 N -0.308 5.308 7 C 0.313 3.687 8 O -0.478 6.478 9 C -0.168 4.168 10 C -0.162 4.162 11 C 0.021 3.979 12 H 0.128 0.872 13 C 0.040 3.960 14 H 0.155 0.845 15 C -0.168 4.168 16 C -0.031 4.031 17 N -0.353 5.353 18 C 0.319 3.681 19 O -0.451 6.451 20 C -0.153 4.153 21 C 0.009 3.991 22 C -0.581 4.581 23 H 0.091 0.909 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.797 3.203 27 H -0.194 1.194 28 H -0.212 1.212 29 H -0.181 1.181 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.140 0.860 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.004 0.996 50 H -0.002 1.002 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.376 -20.766 -20.487 31.688 hybrid contribution 1.098 0.589 0.966 1.577 sum -11.277 -20.177 -19.521 30.255 Atomic orbital electron populations 1.21728 0.92586 1.03100 1.02963 1.22580 0.96422 0.83280 1.00155 1.87820 1.20641 1.27317 1.95487 1.22799 0.81687 0.97287 1.00566 1.21780 1.01295 0.91872 0.86738 1.47046 1.20076 1.53217 1.10433 1.20076 0.82854 0.78987 0.86785 1.90664 1.27019 1.44913 1.85192 1.21473 0.99234 1.01535 0.94543 1.21626 0.93509 1.01255 0.99857 1.21911 0.97105 0.84048 0.94809 0.87250 1.22295 0.85882 0.93428 0.94431 0.84538 1.23274 1.03986 0.92098 0.97460 1.22311 1.01219 1.01026 0.78525 1.48622 1.54484 1.25013 1.07184 1.20808 0.78714 0.84590 0.84029 1.90631 1.59585 1.73221 1.21623 1.21573 0.99507 0.93583 1.00598 1.18646 0.94542 0.93963 0.91933 1.21691 1.34013 1.08846 0.93594 0.90910 1.26124 0.97571 1.01967 0.94727 1.70173 1.47162 1.40211 1.00049 0.85336 0.78218 0.78579 0.78215 1.19443 1.21179 1.18118 0.89949 0.92378 0.91493 0.92481 0.94348 0.90576 0.95336 0.85961 0.89592 0.89071 0.91400 0.88626 0.90664 0.86146 0.87331 0.92199 0.89350 0.89352 0.88115 0.99621 1.00201 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 71.98 0.74 -0.50 16 2 C 0.05 0.59 6.66 71.98 0.48 1.07 16 3 O -0.39 -5.62 9.49 -148.98 -1.41 -7.04 16 4 C 0.05 0.83 6.18 71.98 0.45 1.27 16 5 C 0.11 1.62 5.18 86.38 0.45 2.07 16 6 N -0.58 -11.42 2.47 -796.84 -1.97 -13.39 16 7 C 0.52 15.14 7.33 87.79 0.64 15.78 16 8 O -0.60 -21.24 16.00 -3.03 -0.05 -21.29 16 9 C -0.13 -3.97 5.60 29.72 0.17 -3.81 16 10 C -0.12 -3.22 4.95 30.36 0.15 -3.07 16 11 C 0.12 2.62 3.28 44.95 0.15 2.77 16 12 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 13 C 0.14 2.07 3.51 46.35 0.16 2.24 16 14 H 0.14 1.49 7.48 -2.39 -0.02 1.47 16 15 C -0.13 -1.29 6.35 31.88 0.20 -1.09 16 16 C 0.09 1.64 6.45 86.71 0.56 2.20 16 17 N -0.62 -16.47 2.83 -791.28 -2.24 -18.71 16 18 C 0.53 20.31 6.37 87.66 0.56 20.87 16 19 O -0.57 -26.79 13.29 -3.05 -0.04 -26.83 16 20 C -0.11 -4.68 4.84 29.84 0.14 -4.53 16 21 C 0.05 2.64 4.26 29.85 0.13 2.77 16 22 C -0.54 -31.46 9.11 25.60 0.23 -31.23 16 23 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 24 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 25 N -0.94 -60.01 13.29 21.45 0.28 -59.73 16 26 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 29 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 30 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.03 0.59 7.84 -2.38 -0.02 0.58 16 37 H 0.12 1.09 5.96 -2.39 -0.01 1.07 16 38 H 0.09 1.62 7.32 -2.39 -0.02 1.60 16 39 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 40 H 0.07 2.60 6.15 -2.39 -0.01 2.58 16 41 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 2.45 6.30 -2.38 -0.02 2.43 16 43 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.11 0.75 5.92 -2.39 -0.01 0.73 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 48 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 49 H -0.01 -0.93 8.10 -2.39 -0.02 -0.94 16 50 H -0.02 -1.31 8.10 -2.38 -0.02 -1.33 16 51 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -83.04 397.26 3.18 -79.86 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.91 Total: 13.27 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.67 Total: 6.90 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -3.92 Total: -91.83 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -1.50 Total: -55.16 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -83.04 3.18 -79.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.028 kcal (2) G-P(sol) polarization free energy of solvation -83.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds