Wall clock time and date at job start Tue Mar 31 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47173 * 2 1 4 4 C 1.42901 * 113.99836 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46865 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47561 * 62.40281 * 5 4 3 7 7 C 1.46844 * 111.00347 * 176.30835 * 6 5 4 8 8 C 1.53037 * 109.64336 * 173.77777 * 7 6 5 9 9 C 1.53229 * 109.20006 * 59.63246 * 8 7 6 10 10 C 1.52531 * 109.19318 * 303.24183 * 9 8 7 11 11 C 1.53735 * 110.31099 * 178.70323 * 10 9 8 12 12 C 1.51456 * 103.36303 * 118.67639 * 11 10 9 13 13 O 1.21228 * 125.41216 * 180.02562 * 12 11 10 14 14 N 1.33960 * 109.17096 * 359.97438 * 12 11 10 15 15 C 1.46505 * 122.78013 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46944 * 89.97767 * 15 14 12 17 17 C 1.50705 * 109.46865 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00124 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99731 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00272 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47075 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47476 * 119.99775 * 21 19 17 24 24 H 1.48508 * 109.47260 * 240.00178 * 21 19 17 25 25 C 1.34041 * 114.43420 * 0.02562 * 14 12 11 26 26 O 1.21227 * 125.49968 * 180.02562 * 25 14 12 27 27 C 1.46962 * 110.99649 * 52.17618 * 6 5 4 28 28 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47364 * 300.00372 * 1 2 3 30 30 H 1.09007 * 109.46883 * 60.00400 * 1 2 3 31 31 H 1.09000 * 109.47683 * 240.00026 * 2 1 3 32 32 H 1.08997 * 109.47261 * 119.99991 * 2 1 3 33 33 H 1.08990 * 109.47473 * 59.99745 * 4 3 2 34 34 H 1.09000 * 109.46553 * 299.99611 * 4 3 2 35 35 H 1.09003 * 109.46655 * 302.40311 * 5 4 3 36 36 H 1.08997 * 109.46768 * 182.40752 * 5 4 3 37 37 H 1.09005 * 109.44412 * 293.83477 * 7 6 5 38 38 H 1.08999 * 109.44450 * 53.72086 * 7 6 5 39 39 H 1.08997 * 109.51824 * 179.55340 * 8 7 6 40 40 H 1.09004 * 109.51296 * 299.66213 * 8 7 6 41 41 H 1.08998 * 109.52086 * 63.15562 * 9 8 7 42 42 H 1.09005 * 109.51620 * 183.27391 * 9 8 7 43 43 H 1.09003 * 110.63923 * 237.14069 * 11 10 9 44 44 H 1.09000 * 110.64324 * 0.04313 * 11 10 9 45 45 H 1.09004 * 109.47026 * 209.97589 * 15 14 12 46 46 H 1.08998 * 109.47426 * 329.97533 * 15 14 12 47 47 H 1.09000 * 109.46901 * 299.99301 * 16 15 14 48 48 H 1.08998 * 109.47251 * 59.99658 * 16 15 14 49 49 H 0.97005 * 120.00413 * 179.97438 * 20 19 17 50 50 H 1.09006 * 109.45057 * 304.85701 * 27 6 5 51 51 H 1.08995 * 109.45384 * 64.79487 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3323 3.5763 1.2281 7 6 3.7678 4.9766 1.3051 8 6 3.1125 5.6535 2.5111 9 6 3.5200 4.9116 3.7884 10 6 3.1274 3.4431 3.6623 11 6 3.5542 2.6668 4.9187 12 6 2.2424 2.1546 5.4762 13 8 2.1191 1.4840 6.4786 14 7 1.2399 2.5614 4.6862 15 6 -0.1627 2.2318 4.9513 16 6 -0.7842 3.3178 5.8317 17 6 -2.2269 2.9783 6.1049 18 1 -2.6575 2.0783 5.6915 19 6 -2.9970 3.8168 6.8826 20 7 -2.4725 4.9125 7.3864 21 14 -4.7855 3.3965 7.2206 22 1 -5.1305 2.1203 6.5441 23 1 -4.9922 3.2530 8.6841 24 1 -5.6558 4.4822 6.7018 25 6 1.6266 3.2951 3.6331 26 8 0.8891 3.7645 2.7933 27 6 3.7538 2.8239 2.4181 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8333 0.9767 -0.8907 34 1 3.8339 0.9765 0.8892 35 1 3.3865 3.4319 -0.8671 36 1 4.9110 3.0247 -0.0435 37 1 4.8519 5.0140 1.4126 38 1 3.4760 5.4980 0.3935 39 1 3.4433 6.6903 2.5710 40 1 2.0285 5.6228 2.4014 41 1 4.5984 4.9896 3.9266 42 1 3.0102 5.3534 4.6446 43 1 4.2091 1.8368 4.6536 44 1 4.0450 3.3294 5.6316 45 1 -0.7066 2.1730 4.0084 46 1 -0.2197 1.2716 5.4640 47 1 -0.2404 3.3764 6.7746 48 1 -0.7273 4.2780 5.3190 49 1 -3.0144 5.5027 7.9333 50 1 3.4295 1.7873 2.3259 51 1 4.8399 2.8580 2.5032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273954024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:05 Heat of formation + Delta-G solvation = -110.253360 kcal Electronic energy + Delta-G solvation = -31860.873168 eV Core-core repulsion = 27760.441443 eV Total energy + Delta-G solvation = -4100.431725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89103 -39.20255 -38.09098 -37.44915 -35.39014 -34.76836 -33.33429 -32.37293 -31.25219 -29.93368 -28.69558 -27.65255 -25.17779 -24.79066 -23.90005 -22.81033 -21.76583 -21.70533 -21.37726 -20.21290 -18.32251 -17.04692 -16.87896 -16.75298 -16.07834 -15.89616 -15.78913 -15.49613 -15.08428 -14.69860 -14.54339 -14.34048 -14.20044 -13.80966 -13.61862 -13.56663 -13.44722 -13.01575 -12.85213 -12.56041 -12.46553 -12.35757 -12.30089 -12.15932 -11.97966 -11.54418 -11.45334 -11.31222 -11.11367 -11.01261 -10.94330 -10.77268 -10.65630 -10.42562 -10.10248 -10.02313 -9.85379 -9.63636 -9.34110 -9.15182 -8.74596 -8.35405 -8.30032 -6.00074 -4.03185 2.00963 3.08577 3.23719 3.33929 3.40836 3.45490 3.50816 3.69492 4.22155 4.38829 4.46059 4.48547 4.52642 4.79053 4.86044 4.96168 4.96831 5.00291 5.04039 5.13069 5.19403 5.22678 5.29730 5.30599 5.36294 5.36766 5.39402 5.51715 5.59691 5.65275 5.66311 5.71151 5.76177 5.89186 5.90805 6.04086 6.08126 6.14122 6.18595 6.40563 6.44307 6.75020 6.89737 6.98367 7.20042 7.37769 7.63088 7.77940 7.86472 7.96993 8.29962 8.42647 9.02060 9.60641 11.11745 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003721 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.079176 B = 7522.269508 C = 8478.938027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.059 3.941 5 C 0.060 3.940 6 N -0.517 5.517 7 C 0.063 3.937 8 C -0.126 4.126 9 C -0.100 4.100 10 C -0.094 4.094 11 C -0.153 4.153 12 C 0.524 3.476 13 O -0.488 6.488 14 N -0.569 5.569 15 C 0.104 3.896 16 C 0.015 3.985 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.538 3.462 26 O -0.442 6.442 27 C 0.076 3.924 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.020 0.980 48 H 0.022 0.978 49 H 0.261 0.739 50 H 0.081 0.919 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.167 -4.670 -15.462 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.282 6.282 4 C -0.018 4.018 5 C -0.067 4.067 6 N -0.241 5.241 7 C -0.065 4.065 8 C -0.164 4.164 9 C -0.138 4.138 10 C -0.097 4.097 11 C -0.193 4.193 12 C 0.312 3.688 13 O -0.360 6.360 14 N -0.311 5.311 15 C -0.016 4.016 16 C -0.023 4.023 17 C -0.558 4.558 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.324 3.676 26 O -0.310 6.310 27 C -0.052 4.052 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.099 0.901 46 H 0.096 0.904 47 H 0.039 0.961 48 H 0.040 0.960 49 H 0.070 0.930 50 H 0.100 0.900 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.952 -4.471 -15.324 24.023 hybrid contribution 0.074 -0.423 0.390 0.580 sum 18.026 -4.894 -14.934 23.915 Atomic orbital electron populations 1.21717 0.93468 1.01966 1.03688 1.22438 0.96052 0.84158 0.99275 1.88123 1.19563 1.25410 1.95138 1.22592 0.83080 0.96409 0.99739 1.22117 0.97019 0.93621 0.93967 1.61810 1.60033 1.01707 1.00597 1.22041 0.96416 0.88532 0.99517 1.21724 1.03881 0.98006 0.92790 1.21459 1.01392 0.91400 0.99559 1.21124 0.94587 0.98440 0.95600 1.22574 0.97118 1.02170 0.97436 1.20618 0.86854 0.78673 0.82660 1.90749 1.86112 1.36189 1.22981 1.47056 1.11007 1.47808 1.25256 1.22183 0.76137 1.01489 1.01755 1.19365 0.95659 0.93053 0.94226 1.21054 0.95204 1.07994 1.31528 0.92300 1.24985 0.98671 0.94925 0.95626 1.69981 1.36384 1.12563 1.34229 0.86474 0.84755 0.78453 0.77961 1.19610 1.20964 1.20937 1.20053 0.90045 0.77282 0.80184 1.90730 1.59656 1.44208 1.36382 1.21934 0.96872 0.98021 0.88395 0.91402 0.91283 0.91928 0.94013 0.93902 0.93209 0.93428 0.89547 0.93663 0.95297 0.90586 0.91169 0.88886 0.90745 0.90671 0.86930 0.86379 0.90137 0.90382 0.96136 0.96012 0.92973 0.90033 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 37.15 0.38 -1.31 16 2 C 0.06 0.62 6.66 37.15 0.25 0.86 16 3 O -0.36 -4.70 10.25 -35.23 -0.36 -5.06 16 4 C 0.06 0.55 5.57 37.16 0.21 0.76 16 5 C 0.06 0.55 5.51 -3.82 -0.02 0.53 16 6 N -0.52 -5.91 4.04 -234.95 -0.95 -6.86 16 7 C 0.06 0.63 5.44 -3.84 -0.02 0.61 16 8 C -0.13 -1.45 5.81 -26.59 -0.15 -1.61 16 9 C -0.10 -1.11 4.60 -26.85 -0.12 -1.24 16 10 C -0.09 -1.17 0.69 -155.74 -0.11 -1.27 16 11 C -0.15 -1.76 6.30 -27.13 -0.17 -1.93 16 12 C 0.52 9.11 8.09 -10.98 -0.09 9.02 16 13 O -0.49 -10.11 17.48 5.60 0.10 -10.02 16 14 N -0.57 -10.88 2.56 -115.40 -0.30 -11.18 16 15 C 0.10 2.32 5.50 -4.04 -0.02 2.30 16 16 C 0.01 0.40 5.30 -27.88 -0.15 0.25 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 21 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.54 9.48 6.52 -11.25 -0.07 9.41 16 26 O -0.44 -9.14 15.01 5.60 0.08 -9.05 16 27 C 0.08 0.80 3.56 -4.08 -0.01 0.79 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.42 6.06 -51.93 -0.31 0.10 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 1.42 6.26 -51.93 -0.32 1.09 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.11 0.97 7.72 -51.93 -0.40 0.57 16 44 H 0.12 1.14 7.72 -51.93 -0.40 0.74 16 45 H 0.08 1.80 7.84 -51.93 -0.41 1.39 16 46 H 0.08 1.73 7.83 -51.93 -0.41 1.32 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 50 H 0.08 0.91 5.85 -51.93 -0.30 0.60 16 51 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -35.63 403.45 -9.01 -44.64 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.86 Total: -2.35 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.52 Total: 3.40 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: -0.51 Total: -44.79 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.18 Total: -24.13 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.63 -9.01 -44.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273954024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.612 kcal (2) G-P(sol) polarization free energy of solvation -35.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds