Wall clock time and date at job start Tue Mar 31 2020 21:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42906 * 109.47173 * 2 1 4 4 C 1.42901 * 113.99836 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46865 * 180.02562 * 4 3 2 6 6 N 1.46898 * 109.47561 * 62.40281 * 5 4 3 7 7 C 1.46844 * 111.00347 * 176.30835 * 6 5 4 8 8 C 1.53037 * 109.64336 * 173.77777 * 7 6 5 9 9 C 1.53229 * 109.20006 * 59.63246 * 8 7 6 10 10 C 1.52531 * 109.19318 * 303.24183 * 9 8 7 11 11 C 1.53735 * 110.31099 * 178.70323 * 10 9 8 12 12 C 1.51456 * 103.36303 * 118.67639 * 11 10 9 13 13 O 1.21228 * 125.41216 * 180.02562 * 12 11 10 14 14 N 1.33960 * 109.17096 * 359.97438 * 12 11 10 15 15 C 1.46505 * 122.78013 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46944 * 89.97767 * 15 14 12 17 17 C 1.50705 * 109.46865 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00124 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99731 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00272 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00082 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47075 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47476 * 119.99775 * 21 19 17 24 24 H 1.48508 * 109.47260 * 240.00178 * 21 19 17 25 25 C 1.34041 * 114.43420 * 0.02562 * 14 12 11 26 26 O 1.21227 * 125.49968 * 180.02562 * 25 14 12 27 27 C 1.46962 * 110.99649 * 52.17618 * 6 5 4 28 28 H 1.09003 * 109.47364 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47364 * 300.00372 * 1 2 3 30 30 H 1.09007 * 109.46883 * 60.00400 * 1 2 3 31 31 H 1.09000 * 109.47683 * 240.00026 * 2 1 3 32 32 H 1.08997 * 109.47261 * 119.99991 * 2 1 3 33 33 H 1.08990 * 109.47473 * 59.99745 * 4 3 2 34 34 H 1.09000 * 109.46553 * 299.99611 * 4 3 2 35 35 H 1.09003 * 109.46655 * 302.40311 * 5 4 3 36 36 H 1.08997 * 109.46768 * 182.40752 * 5 4 3 37 37 H 1.09005 * 109.44412 * 293.83477 * 7 6 5 38 38 H 1.08999 * 109.44450 * 53.72086 * 7 6 5 39 39 H 1.08997 * 109.51824 * 179.55340 * 8 7 6 40 40 H 1.09004 * 109.51296 * 299.66213 * 8 7 6 41 41 H 1.08998 * 109.52086 * 63.15562 * 9 8 7 42 42 H 1.09005 * 109.51620 * 183.27391 * 9 8 7 43 43 H 1.09003 * 110.63923 * 237.14069 * 11 10 9 44 44 H 1.09000 * 110.64324 * 0.04313 * 11 10 9 45 45 H 1.09004 * 109.47026 * 209.97589 * 15 14 12 46 46 H 1.08998 * 109.47426 * 329.97533 * 15 14 12 47 47 H 1.09000 * 109.46901 * 299.99301 * 16 15 14 48 48 H 1.08998 * 109.47251 * 59.99658 * 16 15 14 49 49 H 0.97005 * 120.00413 * 179.97438 * 20 19 17 50 50 H 1.09006 * 109.45057 * 304.85701 * 27 6 5 51 51 H 1.08995 * 109.45384 * 64.79487 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3323 3.5763 1.2281 7 6 3.7678 4.9766 1.3051 8 6 3.1125 5.6535 2.5111 9 6 3.5200 4.9116 3.7884 10 6 3.1274 3.4431 3.6623 11 6 3.5542 2.6668 4.9187 12 6 2.2424 2.1546 5.4762 13 8 2.1191 1.4840 6.4786 14 7 1.2399 2.5614 4.6862 15 6 -0.1627 2.2318 4.9513 16 6 -0.7842 3.3178 5.8317 17 6 -2.2269 2.9783 6.1049 18 1 -2.6575 2.0783 5.6915 19 6 -2.9970 3.8168 6.8826 20 7 -2.4725 4.9125 7.3864 21 14 -4.7855 3.3965 7.2206 22 1 -5.1305 2.1203 6.5441 23 1 -4.9922 3.2530 8.6841 24 1 -5.6558 4.4822 6.7018 25 6 1.6266 3.2951 3.6331 26 8 0.8891 3.7645 2.7933 27 6 3.7538 2.8239 2.4181 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8333 0.9767 -0.8907 34 1 3.8339 0.9765 0.8892 35 1 3.3865 3.4319 -0.8671 36 1 4.9110 3.0247 -0.0435 37 1 4.8519 5.0140 1.4126 38 1 3.4760 5.4980 0.3935 39 1 3.4433 6.6903 2.5710 40 1 2.0285 5.6228 2.4014 41 1 4.5984 4.9896 3.9266 42 1 3.0102 5.3534 4.6446 43 1 4.2091 1.8368 4.6536 44 1 4.0450 3.3294 5.6316 45 1 -0.7066 2.1730 4.0084 46 1 -0.2197 1.2716 5.4640 47 1 -0.2404 3.3764 6.7746 48 1 -0.7273 4.2780 5.3190 49 1 -3.0144 5.5027 7.9333 50 1 3.4295 1.7873 2.3259 51 1 4.8399 2.8580 2.5032 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273954024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:04 Heat of formation + Delta-G solvation = -135.473474 kcal Electronic energy + Delta-G solvation = -31861.966794 eV Core-core repulsion = 27760.441443 eV Total energy + Delta-G solvation = -4101.525351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.17802 -40.23083 -39.29575 -38.49184 -36.90875 -36.13645 -35.02324 -33.66994 -32.13748 -31.70637 -29.47309 -28.80349 -27.07492 -25.62212 -25.20907 -23.66498 -23.64543 -22.68804 -22.23126 -21.52391 -19.59169 -18.85088 -17.89258 -17.73528 -17.57709 -17.40325 -16.96973 -16.52715 -16.36798 -15.96044 -15.78313 -15.49613 -15.31883 -15.02636 -14.87627 -14.73857 -14.53310 -14.47150 -14.29347 -13.82595 -13.66268 -13.46272 -13.37087 -13.17455 -13.05110 -12.93090 -12.79268 -12.70353 -12.37828 -12.15399 -12.11988 -12.09778 -11.96727 -11.84580 -11.69155 -11.45730 -11.24599 -11.11611 -10.70129 -10.64552 -10.51413 -10.42293 -8.98432 -8.29047 -6.42470 0.63473 1.35993 1.37963 1.51242 1.67272 1.89153 2.36704 2.75504 2.93118 3.04667 3.17774 3.28064 3.49428 3.62237 3.97215 4.06149 4.13034 4.13997 4.17651 4.25890 4.27813 4.36974 4.40616 4.44426 4.48616 4.51770 4.52534 4.56047 4.63172 4.65493 4.68737 4.74836 4.76085 4.84094 4.89488 4.93222 4.98029 5.01767 5.09789 5.24005 5.25961 5.29961 5.34133 5.50015 5.67373 6.03649 6.05042 6.20511 6.27607 6.47733 6.49579 6.70195 6.94935 7.27346 8.84090 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011210 B = 0.003721 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.079176 B = 7522.269508 C = 8478.938027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.400 6.400 4 C 0.053 3.947 5 C 0.063 3.937 6 N -0.553 5.553 7 C 0.068 3.932 8 C -0.128 4.128 9 C -0.099 4.099 10 C -0.081 4.081 11 C -0.131 4.131 12 C 0.514 3.486 13 O -0.529 6.529 14 N -0.583 5.583 15 C 0.119 3.881 16 C 0.031 3.969 17 C -0.547 4.547 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.931 5.931 21 Si 0.974 3.026 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.275 1.275 25 C 0.528 3.472 26 O -0.484 6.484 27 C 0.079 3.921 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.122 0.878 42 H 0.053 0.947 43 H 0.157 0.843 44 H 0.148 0.852 45 H 0.074 0.926 46 H 0.078 0.922 47 H -0.011 1.011 48 H -0.014 1.014 49 H 0.266 0.734 50 H 0.074 0.926 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.093 -5.576 -16.319 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.320 6.320 4 C -0.024 4.024 5 C -0.064 4.064 6 N -0.278 5.278 7 C -0.059 4.059 8 C -0.166 4.166 9 C -0.137 4.137 10 C -0.085 4.085 11 C -0.170 4.170 12 C 0.306 3.694 13 O -0.404 6.404 14 N -0.325 5.325 15 C -0.003 4.003 16 C -0.007 4.007 17 C -0.585 4.585 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.571 5.571 21 Si 0.797 3.203 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.201 1.201 25 C 0.317 3.683 26 O -0.354 6.354 27 C -0.049 4.049 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.061 0.939 41 H 0.140 0.860 42 H 0.072 0.928 43 H 0.175 0.825 44 H 0.166 0.834 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.007 0.993 48 H 0.005 0.995 49 H 0.075 0.925 50 H 0.093 0.907 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 20.922 -5.379 -16.202 27.002 hybrid contribution -0.868 -0.089 0.632 1.078 sum 20.053 -5.467 -15.569 25.970 Atomic orbital electron populations 1.21732 0.94590 1.02753 1.01742 1.22500 0.95244 0.83813 1.00473 1.88088 1.21979 1.26524 1.95409 1.22826 0.81356 0.97038 1.01154 1.22146 0.98697 0.93001 0.92518 1.61695 1.61889 1.02553 1.01682 1.21992 0.97929 0.87694 0.98310 1.21697 1.00960 0.99645 0.94258 1.21553 1.03922 0.89850 0.98357 1.21216 0.89745 0.99987 0.97519 1.22718 0.93822 1.03683 0.96819 1.21740 0.88536 0.77499 0.81658 1.90721 1.86969 1.38054 1.24664 1.47285 1.09882 1.48699 1.26640 1.21628 0.78869 0.99556 1.00210 1.19096 0.95576 0.92990 0.93066 1.21487 0.96267 1.08613 1.32159 0.91589 1.26038 1.04081 0.94516 0.94980 1.70116 1.38574 1.13663 1.34727 0.85270 0.78028 0.78757 0.78218 1.18301 1.19905 1.20076 1.21174 0.92724 0.75682 0.78733 1.90707 1.61460 1.45488 1.37732 1.21971 0.98962 0.97118 0.86820 0.89287 0.94699 0.92282 0.91610 0.93668 0.91104 0.92497 0.90695 0.90381 0.91963 0.91002 0.89398 0.93906 0.85951 0.92822 0.82526 0.83433 0.90803 0.90400 0.99299 0.99520 0.92503 0.90742 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 10.28 71.98 0.74 -2.75 16 2 C 0.06 1.17 6.66 71.98 0.48 1.65 16 3 O -0.40 -10.19 10.25 -148.98 -1.53 -11.72 16 4 C 0.05 0.86 5.57 71.98 0.40 1.27 16 5 C 0.06 0.98 5.51 86.30 0.48 1.46 16 6 N -0.55 -11.43 4.04 -897.26 -3.62 -15.06 16 7 C 0.07 1.18 5.44 86.33 0.47 1.65 16 8 C -0.13 -2.81 5.81 30.68 0.18 -2.63 16 9 C -0.10 -1.96 4.60 30.52 0.14 -1.82 16 10 C -0.08 -1.84 0.69 -52.98 -0.04 -1.88 16 11 C -0.13 -2.58 6.30 30.34 0.19 -2.39 16 12 C 0.51 17.89 8.09 88.03 0.71 18.61 16 13 O -0.53 -22.32 17.48 -2.87 -0.05 -22.37 16 14 N -0.58 -23.32 2.56 -756.72 -1.94 -25.26 16 15 C 0.12 5.70 5.50 86.38 0.47 6.18 16 16 C 0.03 1.79 5.30 29.85 0.16 1.95 16 17 C -0.55 -33.33 9.11 25.60 0.23 -33.10 16 18 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 19 C 0.00 0.13 5.46 84.65 0.46 0.59 16 20 N -0.93 -59.40 13.29 21.44 0.28 -59.11 16 21 Si 0.97 46.29 29.54 68.60 2.03 48.31 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 25 C 0.53 19.26 6.52 87.81 0.57 19.84 16 26 O -0.48 -21.46 15.01 -2.87 -0.04 -21.50 16 27 C 0.08 1.38 3.56 86.11 0.31 1.69 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.82 6.06 -2.39 -0.01 0.80 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.38 6.26 -2.38 -0.01 1.37 16 41 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.16 1.83 7.72 -2.39 -0.02 1.81 16 44 H 0.15 2.18 7.72 -2.39 -0.02 2.16 16 45 H 0.07 3.58 7.84 -2.38 -0.02 3.56 16 46 H 0.08 3.68 7.83 -2.39 -0.02 3.66 16 47 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 48 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 50 H 0.07 1.43 5.85 -2.38 -0.01 1.41 16 51 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -85.80 403.45 1.99 -83.82 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.90 Total: 12.59 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.96 Total: 10.31 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -5.28 Total: -99.43 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.62 Total: -55.60 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -85.80 1.99 -83.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273954024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.657 kcal (2) G-P(sol) polarization free energy of solvation -85.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds