Wall clock time and date at job start Tue Mar 31 2020 21:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47233 * 2 1 4 4 C 1.42897 * 114.00453 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47362 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47011 * 65.00326 * 5 4 3 7 7 C 1.33960 * 122.78303 * 270.02039 * 6 5 4 8 8 O 1.21228 * 125.41498 * 359.97438 * 7 6 5 9 9 C 1.51450 * 109.17143 * 179.97438 * 7 6 5 10 10 C 1.53737 * 103.36720 * 0.02562 * 9 7 6 11 11 C 1.52535 * 110.30258 * 241.32025 * 10 9 7 12 12 C 1.53217 * 109.20496 * 181.32772 * 11 10 9 13 13 C 1.53053 * 109.19523 * 56.76616 * 12 11 10 14 14 N 1.46843 * 109.62894 * 300.35324 * 13 12 11 15 15 C 1.46906 * 110.99752 * 186.23573 * 14 13 12 16 16 C 1.52999 * 109.46897 * 66.04830 * 15 14 13 17 17 C 1.50706 * 109.46573 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.46954 * 111.13987 * 62.17899 * 14 13 12 26 26 C 1.34051 * 122.78509 * 90.00044 * 6 5 4 27 27 O 1.21222 * 125.50161 * 359.97438 * 26 6 5 28 28 H 1.09000 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47163 * 299.99823 * 1 2 3 30 30 H 1.09003 * 109.47303 * 60.00061 * 1 2 3 31 31 H 1.08995 * 109.47158 * 239.99881 * 2 1 3 32 32 H 1.09003 * 109.47303 * 119.99939 * 2 1 3 33 33 H 1.09006 * 109.46794 * 59.99755 * 4 3 2 34 34 H 1.09005 * 109.46944 * 300.00393 * 4 3 2 35 35 H 1.08995 * 109.47237 * 304.99892 * 5 4 3 36 36 H 1.09003 * 109.47178 * 185.00067 * 5 4 3 37 37 H 1.08993 * 110.64244 * 241.53113 * 9 7 6 38 38 H 1.09009 * 110.63676 * 118.47002 * 9 7 6 39 39 H 1.09007 * 109.51294 * 61.41142 * 11 10 9 40 40 H 1.08999 * 109.55787 * 301.27750 * 11 10 9 41 41 H 1.08999 * 109.52065 * 296.85228 * 12 11 10 42 42 H 1.09000 * 109.51825 * 176.67804 * 12 11 10 43 43 H 1.09001 * 109.44258 * 180.30414 * 13 12 11 44 44 H 1.08998 * 109.44364 * 60.40340 * 13 12 11 45 45 H 1.09000 * 109.47033 * 306.04577 * 15 14 13 46 46 H 1.09001 * 109.46544 * 186.04633 * 15 14 13 47 47 H 1.09000 * 109.47486 * 60.00024 * 16 15 14 48 48 H 1.09001 * 109.47362 * 299.99301 * 16 15 14 49 49 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 50 50 H 1.08994 * 109.45123 * 59.26878 * 25 14 13 51 51 H 1.08998 * 109.44780 * 179.19256 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 3.3867 3.5615 1.2512 7 6 2.1834 4.1325 1.3943 8 8 1.3328 4.2038 0.5335 9 6 2.0545 4.6748 2.8025 10 6 3.4028 4.3139 3.4471 11 6 3.1885 3.3827 4.6361 12 6 4.5429 3.0662 5.2788 13 6 5.2278 4.3749 5.6798 14 7 5.4249 5.2131 4.4903 15 6 6.2112 6.4108 4.8147 16 6 7.6308 5.9977 5.2082 17 6 8.4376 7.2265 5.5404 18 1 7.9845 8.2045 5.4728 19 6 9.7557 7.1024 5.9256 20 7 10.4598 8.1748 6.2150 21 14 10.5416 5.4113 6.0350 22 1 11.1501 5.0626 4.7260 23 1 11.5936 5.4213 7.0830 24 1 9.5057 4.4057 6.3829 25 6 4.1389 5.5768 3.8792 26 6 4.1561 3.6071 2.3480 27 8 5.2761 3.1531 2.4416 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9764 -0.8892 34 1 3.8332 0.9767 0.8908 35 1 3.3499 3.4409 -0.8424 36 1 4.9082 3.0255 -0.0893 37 1 1.2340 4.1871 3.3285 38 1 1.9137 5.7556 2.7865 39 1 2.7223 2.4583 4.2952 40 1 2.5427 3.8680 5.3679 41 1 5.1690 2.5316 4.5645 42 1 4.3905 2.4489 6.1642 43 1 6.1944 4.1546 6.1327 44 1 4.6034 4.9058 6.3984 45 1 5.7429 6.9388 5.6454 46 1 6.2514 7.0657 3.9443 47 1 8.0991 5.4697 4.3775 48 1 7.5906 5.3428 6.0786 49 1 11.3873 8.0875 6.4856 50 1 3.5331 6.1199 4.6045 51 1 4.3164 6.2091 3.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:18 Heat of formation + Delta-G solvation = -109.607143 kcal Electronic energy + Delta-G solvation = -31205.409479 eV Core-core repulsion = 27105.005776 eV Total energy + Delta-G solvation = -4100.403703 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30047 -39.12426 -38.34829 -37.88880 -35.83186 -34.93831 -33.11544 -32.35315 -31.62431 -30.07835 -29.43066 -27.48964 -25.46244 -24.65880 -23.42459 -23.09909 -22.90084 -21.94898 -20.80019 -19.83588 -18.63847 -17.52250 -17.05860 -16.86811 -16.66751 -16.22724 -16.10083 -15.33817 -15.06045 -14.86776 -14.76612 -14.34251 -14.14848 -14.00862 -13.87905 -13.72557 -13.60615 -13.13506 -12.95933 -12.80566 -12.65951 -12.52076 -12.36512 -12.31051 -12.22100 -11.98413 -11.70334 -11.41904 -11.37137 -11.04558 -10.95822 -10.73068 -10.50183 -10.32941 -10.09891 -9.94354 -9.79570 -9.73614 -9.68850 -9.62752 -9.16609 -8.50198 -7.82344 -6.02424 -4.00284 1.58356 2.41724 2.69199 3.33108 3.35668 3.42220 3.47829 3.85192 4.04710 4.19659 4.37374 4.48869 4.52075 4.64493 4.67184 4.75630 4.87448 4.89476 4.97484 5.01288 5.04691 5.08791 5.14926 5.29139 5.32568 5.33514 5.38042 5.39671 5.47933 5.55208 5.60299 5.63535 5.67219 5.73116 5.79271 5.84854 5.86293 6.12250 6.27317 6.36866 6.46982 6.76556 6.77748 6.87474 7.16505 7.33270 7.36595 7.59471 7.63703 7.83872 7.86968 8.54724 9.01587 9.60470 11.10860 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002754 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.200873 B =10164.607440 C =10482.175837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.378 6.378 4 C 0.046 3.954 5 C 0.103 3.897 6 N -0.574 5.574 7 C 0.533 3.467 8 O -0.476 6.476 9 C -0.152 4.152 10 C -0.089 4.089 11 C -0.097 4.097 12 C -0.125 4.125 13 C 0.056 3.944 14 N -0.533 5.533 15 C 0.073 3.927 16 C -0.006 4.006 17 C -0.520 4.520 18 H 0.070 0.930 19 C 0.067 3.933 20 N -0.905 5.905 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.265 1.265 25 C 0.075 3.925 26 C 0.538 3.462 27 O -0.443 6.443 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.021 0.979 48 H 0.016 0.984 49 H 0.263 0.737 50 H 0.048 0.952 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.305 -15.552 -9.589 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.297 6.297 4 C -0.032 4.032 5 C -0.019 4.019 6 N -0.319 5.319 7 C 0.321 3.679 8 O -0.347 6.347 9 C -0.192 4.192 10 C -0.093 4.093 11 C -0.135 4.135 12 C -0.163 4.163 13 C -0.072 4.072 14 N -0.257 5.257 15 C -0.053 4.053 16 C -0.044 4.044 17 C -0.559 4.559 18 H 0.088 0.912 19 C -0.134 4.134 20 N -0.544 5.544 21 Si 0.709 3.291 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.189 1.189 25 C -0.054 4.054 26 C 0.326 3.674 27 O -0.310 6.310 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.047 0.953 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.040 0.960 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.790 -15.826 -10.310 28.089 hybrid contribution 0.330 -0.567 0.562 0.864 sum -20.460 -16.393 -9.748 27.971 Atomic orbital electron populations 1.21713 0.93629 1.02007 1.03301 1.22452 0.95756 0.83863 0.99884 1.88017 1.20183 1.26146 1.95396 1.22864 0.82397 0.96632 1.01267 1.21768 1.01794 0.92097 0.86197 1.46830 1.17752 1.53039 1.14245 1.20689 0.80523 0.76194 0.90462 1.90755 1.42147 1.54615 1.47211 1.22610 0.98645 1.04922 0.93036 1.21149 0.94098 0.98326 0.95753 1.21454 0.98978 0.97967 0.95089 1.21746 0.95449 0.98125 1.00979 1.22085 1.00853 0.93165 0.91101 1.62023 1.14730 1.20392 1.28546 1.22107 0.95183 0.89061 0.98934 1.19563 0.91257 0.97304 0.96272 1.21084 0.95940 0.93318 1.45549 0.91175 1.24993 0.97140 0.96576 0.94683 1.69919 1.09145 1.28508 1.46787 0.86748 0.79166 0.85243 0.77957 1.20260 1.21583 1.18910 1.21853 0.91111 0.92638 0.99783 1.20412 0.85411 0.78490 0.83119 1.90771 1.15918 1.43184 1.81139 0.91229 0.91913 0.91763 0.93472 0.93629 0.91664 0.92677 0.88206 0.87268 0.86296 0.86201 0.91640 0.90380 0.89676 0.91454 0.89661 0.95317 0.95456 0.91592 0.96042 0.96569 0.92776 0.93386 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.47 6.66 37.16 0.25 0.71 16 3 O -0.38 -4.11 9.67 -35.23 -0.34 -4.45 16 4 C 0.05 0.43 6.28 37.16 0.23 0.66 16 5 C 0.10 1.04 5.97 -4.04 -0.02 1.02 16 6 N -0.57 -6.66 2.53 -115.41 -0.29 -6.95 16 7 C 0.53 6.14 7.71 -10.98 -0.08 6.05 16 8 O -0.48 -6.74 17.22 5.60 0.10 -6.65 16 9 C -0.15 -1.31 6.30 -27.13 -0.17 -1.48 16 10 C -0.09 -0.97 0.69 -155.74 -0.11 -1.08 16 11 C -0.10 -0.96 4.60 -26.86 -0.12 -1.08 16 12 C -0.13 -1.55 5.81 -26.59 -0.15 -1.70 16 13 C 0.06 0.84 5.28 -3.83 -0.02 0.82 16 14 N -0.53 -8.87 4.03 -234.96 -0.95 -9.81 16 15 C 0.07 1.46 4.90 -3.82 -0.02 1.44 16 16 C -0.01 -0.15 3.98 -27.88 -0.11 -0.26 16 17 C -0.52 -14.87 9.66 -34.44 -0.33 -15.21 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 21 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.26 -6.41 6.54 56.52 0.37 -6.05 16 25 C 0.08 0.96 3.99 -4.08 -0.02 0.95 16 26 C 0.54 7.00 6.52 -11.24 -0.07 6.92 16 27 O -0.44 -7.18 15.02 5.61 0.08 -7.09 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.99 7.83 -51.93 -0.41 0.58 16 36 H 0.11 1.03 7.84 -51.93 -0.41 0.63 16 37 H 0.12 0.79 7.72 -51.93 -0.40 0.39 16 38 H 0.12 0.86 7.72 -51.92 -0.40 0.46 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.24 6.25 -51.93 -0.32 0.92 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.47 6.21 -51.93 -0.32 1.15 16 44 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 46 H 0.07 1.31 8.00 -51.93 -0.42 0.90 16 47 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 48 H 0.02 0.39 5.49 -51.93 -0.28 0.11 16 49 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 51 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -34.70 399.53 -8.60 -43.30 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -8.85 Total: -3.54 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -0.47 Total: -1.06 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.47 Total: -44.06 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.16 Total: -18.19 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.70 -8.60 -43.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.309 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds