Wall clock time and date at job start Tue Mar 31 2020 21:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42899 * 109.47233 * 2 1 4 4 C 1.42897 * 114.00453 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47362 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47011 * 65.00326 * 5 4 3 7 7 C 1.33960 * 122.78303 * 270.02039 * 6 5 4 8 8 O 1.21228 * 125.41498 * 359.97438 * 7 6 5 9 9 C 1.51450 * 109.17143 * 179.97438 * 7 6 5 10 10 C 1.53737 * 103.36720 * 0.02562 * 9 7 6 11 11 C 1.52535 * 110.30258 * 241.32025 * 10 9 7 12 12 C 1.53217 * 109.20496 * 181.32772 * 11 10 9 13 13 C 1.53053 * 109.19523 * 56.76616 * 12 11 10 14 14 N 1.46843 * 109.62894 * 300.35324 * 13 12 11 15 15 C 1.46906 * 110.99752 * 186.23573 * 14 13 12 16 16 C 1.52999 * 109.46897 * 66.04830 * 15 14 13 17 17 C 1.50706 * 109.46573 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.72054 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99350 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47353 * 89.99430 * 21 19 17 23 23 H 1.48494 * 109.47031 * 209.99977 * 21 19 17 24 24 H 1.48504 * 109.46680 * 329.99678 * 21 19 17 25 25 C 1.46954 * 111.13987 * 62.17899 * 14 13 12 26 26 C 1.34051 * 122.78509 * 90.00044 * 6 5 4 27 27 O 1.21222 * 125.50161 * 359.97438 * 26 6 5 28 28 H 1.09000 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47163 * 299.99823 * 1 2 3 30 30 H 1.09003 * 109.47303 * 60.00061 * 1 2 3 31 31 H 1.08995 * 109.47158 * 239.99881 * 2 1 3 32 32 H 1.09003 * 109.47303 * 119.99939 * 2 1 3 33 33 H 1.09006 * 109.46794 * 59.99755 * 4 3 2 34 34 H 1.09005 * 109.46944 * 300.00393 * 4 3 2 35 35 H 1.08995 * 109.47237 * 304.99892 * 5 4 3 36 36 H 1.09003 * 109.47178 * 185.00067 * 5 4 3 37 37 H 1.08993 * 110.64244 * 241.53113 * 9 7 6 38 38 H 1.09009 * 110.63676 * 118.47002 * 9 7 6 39 39 H 1.09007 * 109.51294 * 61.41142 * 11 10 9 40 40 H 1.08999 * 109.55787 * 301.27750 * 11 10 9 41 41 H 1.08999 * 109.52065 * 296.85228 * 12 11 10 42 42 H 1.09000 * 109.51825 * 176.67804 * 12 11 10 43 43 H 1.09001 * 109.44258 * 180.30414 * 13 12 11 44 44 H 1.08998 * 109.44364 * 60.40340 * 13 12 11 45 45 H 1.09000 * 109.47033 * 306.04577 * 15 14 13 46 46 H 1.09001 * 109.46544 * 186.04633 * 15 14 13 47 47 H 1.09000 * 109.47486 * 60.00024 * 16 15 14 48 48 H 1.09001 * 109.47362 * 299.99301 * 16 15 14 49 49 H 0.97005 * 119.99656 * 180.02562 * 20 19 17 50 50 H 1.08994 * 109.45123 * 59.26878 * 25 14 13 51 51 H 1.08998 * 109.44780 * 179.19256 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 -0.0001 6 7 3.3867 3.5615 1.2512 7 6 2.1834 4.1325 1.3943 8 8 1.3328 4.2038 0.5335 9 6 2.0545 4.6748 2.8025 10 6 3.4028 4.3139 3.4471 11 6 3.1885 3.3827 4.6361 12 6 4.5429 3.0662 5.2788 13 6 5.2278 4.3749 5.6798 14 7 5.4249 5.2131 4.4903 15 6 6.2112 6.4108 4.8147 16 6 7.6308 5.9977 5.2082 17 6 8.4376 7.2265 5.5404 18 1 7.9845 8.2045 5.4728 19 6 9.7557 7.1024 5.9256 20 7 10.4598 8.1748 6.2150 21 14 10.5416 5.4113 6.0350 22 1 11.1501 5.0626 4.7260 23 1 11.5936 5.4213 7.0830 24 1 9.5057 4.4057 6.3829 25 6 4.1389 5.5768 3.8792 26 6 4.1561 3.6071 2.3480 27 8 5.2761 3.1531 2.4416 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9764 -0.8892 34 1 3.8332 0.9767 0.8908 35 1 3.3499 3.4409 -0.8424 36 1 4.9082 3.0255 -0.0893 37 1 1.2340 4.1871 3.3285 38 1 1.9137 5.7556 2.7865 39 1 2.7223 2.4583 4.2952 40 1 2.5427 3.8680 5.3679 41 1 5.1690 2.5316 4.5645 42 1 4.3905 2.4489 6.1642 43 1 6.1944 4.1546 6.1327 44 1 4.6034 4.9058 6.3984 45 1 5.7429 6.9388 5.6454 46 1 6.2514 7.0657 3.9443 47 1 8.0991 5.4697 4.3775 48 1 7.5906 5.3428 6.0786 49 1 11.3873 8.0875 6.4856 50 1 3.5331 6.1199 4.6045 51 1 4.3164 6.2091 3.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:17 Heat of formation + Delta-G solvation = -133.332819 kcal Electronic energy + Delta-G solvation = -31206.438301 eV Core-core repulsion = 27105.005776 eV Total energy + Delta-G solvation = -4101.432525 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21640 -40.14029 -39.20451 -38.88385 -36.87297 -36.16830 -34.82141 -33.60437 -32.35801 -31.73184 -30.34713 -28.37879 -27.04463 -25.61846 -24.39993 -24.15964 -23.71781 -23.09669 -21.76981 -21.41373 -19.59863 -19.01607 -18.37807 -17.81599 -17.55255 -17.11140 -16.90099 -16.64468 -16.24425 -16.10438 -15.87677 -15.51861 -15.29895 -15.21094 -14.92814 -14.69638 -14.60387 -14.40486 -14.26993 -13.99719 -13.75818 -13.51542 -13.32568 -13.21177 -13.09598 -12.97183 -12.92708 -12.71295 -12.35315 -12.10012 -12.08389 -11.95608 -11.88665 -11.80001 -11.60913 -11.35029 -11.24859 -11.06060 -10.74946 -10.74693 -10.71142 -10.60287 -9.08502 -8.30417 -6.33393 0.63973 1.35213 1.35890 1.48876 1.56466 1.79305 2.35385 2.65626 2.86233 3.05394 3.17833 3.29426 3.47733 3.62118 3.90503 3.95625 4.00437 4.11990 4.15327 4.19490 4.23031 4.30777 4.36390 4.39835 4.45662 4.47331 4.54737 4.55985 4.59632 4.66447 4.73802 4.74573 4.82358 4.85265 4.88618 4.94660 4.99503 4.99872 5.05731 5.20600 5.23451 5.30961 5.45381 5.52660 5.64031 5.88931 6.17599 6.19019 6.27755 6.35507 6.45578 6.74301 6.90426 7.31280 8.86041 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002754 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.200873 B =10164.607440 C =10482.175837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.401 6.401 4 C 0.050 3.950 5 C 0.096 3.904 6 N -0.575 5.575 7 C 0.531 3.469 8 O -0.505 6.505 9 C -0.137 4.137 10 C -0.084 4.084 11 C -0.093 4.093 12 C -0.120 4.120 13 C 0.054 3.946 14 N -0.548 5.548 15 C 0.087 3.913 16 C 0.001 3.999 17 C -0.529 4.529 18 H 0.036 0.964 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.948 3.052 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.250 1.250 25 C 0.073 3.927 26 C 0.536 3.464 27 O -0.482 6.482 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.027 0.973 46 H 0.058 0.942 47 H 0.009 0.991 48 H 0.019 0.981 49 H 0.266 0.734 50 H 0.073 0.927 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.601 -17.506 -9.217 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 O -0.321 6.321 4 C -0.027 4.027 5 C -0.025 4.025 6 N -0.319 5.319 7 C 0.321 3.679 8 O -0.378 6.378 9 C -0.177 4.177 10 C -0.088 4.088 11 C -0.130 4.130 12 C -0.158 4.158 13 C -0.074 4.074 14 N -0.273 5.273 15 C -0.040 4.040 16 C -0.036 4.036 17 C -0.567 4.567 18 H 0.054 0.946 19 C -0.189 4.189 20 N -0.589 5.589 21 Si 0.772 3.228 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.174 1.174 25 C -0.056 4.056 26 C 0.325 3.675 27 O -0.352 6.352 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.117 0.883 36 H 0.128 0.872 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.027 0.973 48 H 0.038 0.962 49 H 0.075 0.925 50 H 0.091 0.909 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.122 -17.788 -9.945 30.821 hybrid contribution 1.025 0.090 0.391 1.100 sum -22.097 -17.698 -9.555 29.880 Atomic orbital electron populations 1.21725 0.93053 1.03175 1.02422 1.22638 0.96270 0.82922 1.00741 1.87988 1.20719 1.27803 1.95559 1.22838 0.82086 0.95925 1.01874 1.21889 1.01924 0.92853 0.85863 1.46944 1.17848 1.52759 1.14348 1.21190 0.79823 0.75497 0.91361 1.90747 1.42893 1.55766 1.48421 1.22678 0.97954 1.06423 0.90621 1.21148 0.94592 0.97362 0.95652 1.21509 0.97864 0.98725 0.94920 1.21679 0.96227 0.96427 1.01417 1.22114 1.00015 0.94452 0.90801 1.61892 1.17027 1.18904 1.29439 1.21744 0.93473 0.90308 0.98495 1.19418 0.93355 0.95090 0.95779 1.21419 0.96595 0.93653 1.45048 0.94553 1.25911 0.97859 1.00711 0.94403 1.70055 1.09735 1.30975 1.48173 0.85689 0.78515 0.80373 0.78229 1.19808 1.20663 1.17397 1.21958 0.89745 0.93921 0.99940 1.20830 0.84985 0.77841 0.83851 1.90757 1.17638 1.44970 1.81860 0.89061 0.92778 0.92581 0.92237 0.93100 0.89681 0.93361 0.88258 0.87188 0.83236 0.84066 0.90085 0.87404 0.92293 0.89321 0.92586 0.93787 0.95435 0.92357 0.97259 0.96244 0.92481 0.90893 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.05 0.75 6.66 71.98 0.48 1.22 16 3 O -0.40 -8.27 9.67 -148.98 -1.44 -9.71 16 4 C 0.05 0.89 6.28 71.98 0.45 1.35 16 5 C 0.10 1.91 5.97 86.38 0.52 2.42 16 6 N -0.58 -12.70 2.53 -756.74 -1.92 -14.62 16 7 C 0.53 11.16 7.71 88.02 0.68 11.84 16 8 O -0.51 -13.59 17.22 -2.87 -0.05 -13.64 16 9 C -0.14 -1.84 6.30 30.34 0.19 -1.65 16 10 C -0.08 -1.57 0.69 -52.98 -0.04 -1.61 16 11 C -0.09 -1.45 4.60 30.51 0.14 -1.31 16 12 C -0.12 -2.67 5.81 30.68 0.18 -2.49 16 13 C 0.05 1.54 5.28 86.33 0.46 1.99 16 14 N -0.55 -17.63 4.03 -897.27 -3.61 -21.25 16 15 C 0.09 3.45 4.90 86.30 0.42 3.87 16 16 C 0.00 0.06 3.98 29.85 0.12 0.18 16 17 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 18 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 19 C 0.01 0.49 5.47 84.66 0.46 0.95 16 20 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 21 Si 0.95 46.12 27.47 68.60 1.88 48.01 16 22 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.25 -11.49 6.54 99.48 0.65 -10.84 16 25 C 0.07 1.68 3.99 86.11 0.34 2.02 16 26 C 0.54 13.27 6.52 87.81 0.57 13.84 16 27 O -0.48 -15.57 15.02 -2.85 -0.04 -15.61 16 28 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.10 1.96 7.83 -2.39 -0.02 1.94 16 36 H 0.11 2.12 7.84 -2.39 -0.02 2.10 16 37 H 0.15 1.19 7.72 -2.39 -0.02 1.17 16 38 H 0.14 1.39 7.72 -2.38 -0.02 1.37 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.66 6.25 -2.39 -0.01 1.64 16 42 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.06 1.90 6.21 -2.39 -0.01 1.89 16 44 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 45 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 46 H 0.06 2.35 8.00 -2.39 -0.02 2.34 16 47 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 48 H 0.02 0.93 5.49 -2.39 -0.01 0.92 16 49 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 50 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 Total: -1.00 -77.86 399.53 1.93 -75.93 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.84 Total: 10.09 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.96 Total: 0.71 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -5.23 Total: -95.78 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.53 Total: -38.96 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Total: -77.86 1.93 -75.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.402 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds