Wall clock time and date at job start Tue Mar 31 2020 21:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20762 * 120.00271 * 2 1 4 4 C 1.50704 * 120.00264 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46792 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46890 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00332 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00386 * 179.97438 * 7 6 5 10 10 C 1.47161 * 120.98330 * 0.02562 * 9 7 6 11 11 C 1.53300 * 108.37118 * 129.38539 * 10 9 7 12 12 O 1.42968 * 109.22612 * 52.35397 * 11 10 9 13 13 C 1.42893 * 114.20887 * 297.50525 * 12 11 10 14 14 C 1.52990 * 109.55769 * 302.52586 * 13 12 11 15 15 C 1.53195 * 109.34738 * 300.95636 * 14 13 12 16 16 N 1.46932 * 108.77517 * 305.43150 * 15 14 13 17 17 C 1.36939 * 120.63776 * 233.64856 * 16 15 14 18 18 H 1.07994 * 120.00388 * 29.31573 * 17 16 15 19 19 C 1.38812 * 119.99894 * 209.31432 * 17 16 15 20 20 N 1.31629 * 119.99846 * 24.33934 * 19 17 16 21 21 Si 1.86794 * 120.00220 * 204.34404 * 19 17 16 22 22 H 1.48499 * 109.47166 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47008 * 299.99540 * 21 19 17 24 24 H 1.48500 * 109.47268 * 59.99635 * 21 19 17 25 25 C 1.46925 * 118.71825 * 53.92877 * 16 15 14 26 26 C 1.52999 * 109.54877 * 182.22567 * 13 12 11 27 27 C 1.47149 * 120.99342 * 179.97438 * 9 7 6 28 28 H 1.09007 * 109.46760 * 269.99798 * 1 2 3 29 29 H 1.08997 * 109.47172 * 29.99227 * 1 2 3 30 30 H 1.08996 * 109.47377 * 149.99908 * 1 2 3 31 31 H 1.08999 * 109.46924 * 59.99813 * 4 2 1 32 32 H 1.08999 * 109.46618 * 299.99976 * 4 2 1 33 33 H 1.08995 * 109.47759 * 59.99756 * 5 4 2 34 34 H 1.08999 * 109.47323 * 299.99531 * 5 4 2 35 35 H 1.08999 * 109.47147 * 59.99891 * 6 5 4 36 36 H 1.08994 * 109.47253 * 299.99329 * 6 5 4 37 37 H 1.08994 * 109.68916 * 249.10678 * 10 9 7 38 38 H 1.09007 * 109.67928 * 9.67074 * 10 9 7 39 39 H 1.08998 * 109.51173 * 172.27788 * 11 10 9 40 40 H 1.09005 * 109.51524 * 292.38219 * 11 10 9 41 41 H 1.09006 * 109.48402 * 180.99735 * 14 13 12 42 42 H 1.08991 * 109.51177 * 60.93914 * 14 13 12 43 43 H 1.09000 * 109.58085 * 185.64434 * 15 14 13 44 44 H 1.08999 * 109.70030 * 65.29021 * 15 14 13 45 45 H 0.96998 * 119.99676 * 5.78285 * 20 19 17 46 46 H 1.09008 * 109.58706 * 65.84446 * 25 16 15 47 47 H 1.08998 * 109.59128 * 186.27686 * 25 16 15 48 48 H 1.08997 * 109.49447 * 178.99766 * 26 13 12 49 49 H 1.09001 * 109.49212 * 299.05162 * 26 13 12 50 50 H 1.09005 * 109.67843 * 110.76276 * 27 9 7 51 51 H 1.09000 * 109.67648 * 350.22798 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 0.0002 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0752 -0.0009 8 8 6.4156 -0.9317 -0.0004 9 7 6.8872 -3.0995 -0.0014 10 6 6.4207 -4.4952 -0.0026 11 6 7.1434 -5.2452 -1.1273 12 8 8.5532 -5.0480 -0.9947 13 6 8.9691 -3.6870 -1.1234 14 6 8.5159 -3.1389 -2.4780 15 6 9.1246 -3.9881 -3.5984 16 7 10.5825 -4.0306 -3.4208 17 6 11.4208 -3.6773 -4.4444 18 1 11.1015 -2.9519 -5.1780 19 6 12.6810 -4.2516 -4.5391 20 7 12.9113 -5.4269 -3.9929 21 14 14.0498 -3.3567 -5.4416 22 1 15.2877 -4.1760 -5.4010 23 1 13.6494 -3.1355 -6.8544 24 1 14.3005 -2.0473 -4.7874 25 6 11.1236 -4.4654 -2.1259 26 6 10.4934 -3.6055 -1.0197 27 6 8.3383 -2.8556 -0.0018 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 1.9972 -1.8763 -0.8908 32 1 1.9972 -1.8770 0.8892 33 1 4.0277 -0.4545 0.8906 34 1 4.0284 -0.4534 -0.8893 35 1 4.2666 -2.9212 -0.8917 36 1 4.2662 -2.9231 0.8882 37 1 6.6510 -4.9602 0.9559 38 1 5.3447 -4.5224 -0.1754 39 1 6.9167 -6.3092 -1.0596 40 1 6.8109 -4.8628 -2.0924 41 1 8.8491 -2.1063 -2.5823 42 1 7.4286 -3.1784 -2.5413 43 1 8.8869 -3.5428 -4.5645 44 1 8.7213 -4.9997 -3.5531 45 1 12.1818 -5.9294 -3.5978 46 1 10.8785 -5.5147 -1.9612 47 1 12.2058 -4.3354 -2.1198 48 1 10.8110 -2.5693 -1.1358 49 1 10.8121 -3.9767 -0.0457 50 1 8.7610 -3.1537 0.9577 51 1 8.5326 -1.7973 -0.1759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274856259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:25 Heat of formation + Delta-G solvation = -100.855974 kcal Electronic energy + Delta-G solvation = -30771.064073 eV Core-core repulsion = 26671.039849 eV Total energy + Delta-G solvation = -4100.024223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.77056 -39.84587 -38.89772 -36.41099 -34.67338 -34.65815 -33.17162 -31.34779 -31.06113 -29.87521 -28.90277 -28.54854 -26.47073 -24.25434 -23.50670 -22.64947 -22.31376 -20.81310 -19.98905 -19.11294 -18.92011 -17.52480 -17.29642 -16.55739 -16.41481 -15.83399 -15.69624 -15.45412 -15.25813 -14.94410 -14.81981 -14.35484 -14.06718 -13.72088 -13.70974 -13.46840 -13.40658 -13.26979 -12.99673 -12.64232 -12.52174 -12.23699 -12.16332 -12.06005 -11.93690 -11.76162 -11.62890 -11.49150 -11.11768 -10.94734 -10.67869 -10.52437 -10.43616 -10.30632 -10.15298 -10.02876 -9.95116 -9.71794 -9.49187 -9.23347 -8.48281 -8.32300 -6.81372 -6.01430 -3.19395 1.59877 2.51807 2.76648 3.52466 3.55935 3.63225 3.73864 3.89131 4.21177 4.53415 4.57994 4.63234 4.65511 4.68710 4.76555 4.84287 4.88037 5.01009 5.03236 5.05394 5.11910 5.16859 5.22353 5.23492 5.28375 5.35711 5.52453 5.57435 5.60962 5.61993 5.73008 5.77946 5.83755 5.95164 6.03739 6.17635 6.22785 6.25451 6.38649 6.45081 6.51665 6.67706 6.87702 7.08406 7.15143 7.25164 7.29362 7.46575 8.05998 8.06293 8.63289 9.17622 9.89844 10.36253 11.26411 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.002360 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.970926 B =11862.119143 C =12451.019114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.453 6.453 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.139 4.139 7 C 0.513 3.487 8 O -0.536 6.536 9 N -0.613 5.613 10 C 0.073 3.927 11 C 0.043 3.957 12 O -0.358 6.358 13 C 0.118 3.882 14 C -0.151 4.151 15 C 0.154 3.846 16 N -0.598 5.598 17 C -0.349 4.349 18 H 0.053 0.947 19 C -0.024 4.024 20 N -0.916 5.916 21 Si 1.064 2.936 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.159 3.841 26 C -0.122 4.122 27 C 0.089 3.911 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.019 0.981 45 H 0.269 0.731 46 H 0.027 0.973 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.060 0.940 50 H 0.071 0.929 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.390 1.473 11.384 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.326 6.326 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.179 4.179 7 C 0.301 3.699 8 O -0.413 6.413 9 N -0.347 5.347 10 C -0.050 4.050 11 C -0.035 4.035 12 O -0.276 6.276 13 C 0.078 3.922 14 C -0.190 4.190 15 C 0.028 3.972 16 N -0.321 5.321 17 C -0.478 4.478 18 H 0.071 0.929 19 C -0.226 4.226 20 N -0.556 5.556 21 Si 0.894 3.106 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.221 1.221 25 C 0.033 3.967 26 C -0.161 4.161 27 C -0.034 4.034 28 H 0.113 0.887 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.045 0.955 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.078 0.922 50 H 0.089 0.911 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.081 2.453 10.990 24.787 hybrid contribution -2.125 0.009 0.375 2.158 sum -24.207 2.462 11.365 26.855 Atomic orbital electron populations 1.22305 0.94536 1.04793 1.04605 1.24645 0.91918 0.90412 0.70537 1.90465 1.71922 1.35192 1.35017 1.22183 0.96536 0.97636 1.04696 1.21167 0.91603 0.95870 1.04963 1.21703 0.91878 1.00093 1.04187 1.20665 0.88589 0.84683 0.75961 1.90726 1.80078 1.20993 1.49481 1.48169 1.06861 1.06080 1.73602 1.22487 0.99753 0.81896 1.00861 1.22908 0.83116 1.00466 0.97048 1.88060 1.20675 1.26186 1.92703 1.21733 0.95884 0.81363 0.93200 1.22496 0.98973 1.01305 0.96266 1.20763 0.85861 0.95719 0.94849 1.44099 0.99776 1.78939 1.09323 1.19954 0.99187 1.20973 1.07682 0.92877 1.25857 0.99886 0.95969 1.00934 1.70774 1.36420 1.09424 1.38954 0.83538 0.76379 0.75224 0.75454 1.21114 1.22057 1.22058 1.20927 0.98244 0.94344 0.83168 1.22153 0.90906 1.02338 1.00736 1.22431 0.78912 1.02529 0.99489 0.88739 0.89766 0.89668 0.88236 0.88307 0.90597 0.90487 0.88812 0.88894 0.90567 0.89165 0.88086 0.92288 0.91331 0.93036 0.93018 0.96360 0.91955 0.95523 0.90419 0.90778 0.92168 0.91106 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.81 10.25 36.00 0.37 -0.44 16 2 C 0.35 2.60 7.27 -29.04 -0.21 2.38 16 3 O -0.45 -5.61 16.72 6.00 0.10 -5.51 16 4 C -0.17 -0.93 5.62 -27.88 -0.16 -1.09 16 5 C -0.10 -0.91 3.79 -26.73 -0.10 -1.01 16 6 C -0.14 -1.12 4.07 -27.88 -0.11 -1.23 16 7 C 0.51 6.67 7.71 -10.99 -0.08 6.58 16 8 O -0.54 -9.32 15.45 5.55 0.09 -9.23 16 9 N -0.61 -7.70 2.52 -172.33 -0.44 -8.13 16 10 C 0.07 0.68 6.54 -3.53 -0.02 0.66 16 11 C 0.04 0.50 6.60 37.31 0.25 0.75 16 12 O -0.36 -5.89 9.00 -35.23 -0.32 -6.20 16 13 C 0.12 2.00 0.68 -90.52 -0.06 1.94 16 14 C -0.15 -2.75 4.33 -26.64 -0.12 -2.87 16 15 C 0.15 3.35 6.28 -3.71 -0.02 3.32 16 16 N -0.60 -15.21 2.83 -172.05 -0.49 -15.69 16 17 C -0.35 -9.88 9.48 -15.06 -0.14 -10.02 16 18 H 0.05 1.52 7.94 -52.49 -0.42 1.10 16 19 C -0.02 -0.70 4.69 -17.43 -0.08 -0.78 16 20 N -0.92 -27.66 12.45 55.49 0.69 -26.97 16 21 Si 1.06 25.59 29.98 -169.99 -5.10 20.49 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.16 3.78 4.49 -3.48 -0.02 3.76 16 26 C -0.12 -2.33 5.12 -26.41 -0.14 -2.46 16 27 C 0.09 1.33 5.29 -3.58 -0.02 1.31 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.15 8.12 -51.93 -0.42 -0.27 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 35 H 0.09 0.58 7.66 -51.93 -0.40 0.18 16 36 H 0.09 0.52 8.01 -51.93 -0.42 0.10 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.54 6.05 -51.93 -0.31 0.22 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.73 6.29 -51.93 -0.33 0.40 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.05 0.85 6.16 -51.93 -0.32 0.53 16 43 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 44 H 0.02 0.40 7.83 -51.93 -0.41 0.00 16 45 H 0.27 8.24 6.72 -40.82 -0.27 7.96 16 46 H 0.03 0.66 7.54 -51.92 -0.39 0.27 16 47 H 0.08 2.06 6.38 -51.93 -0.33 1.73 16 48 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 51 H 0.10 1.63 7.07 -51.93 -0.37 1.26 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -36.37 393.73 -8.85 -45.22 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -8.66 Total: -0.71 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.67 Total: 0.81 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.23 Total: -50.80 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.13 Total: -20.95 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.10 Total: 20.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.37 -8.85 -45.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274856259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.633 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds