Wall clock time and date at job start Tue Mar 31 2020 21:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.20762 * 120.00271 * 2 1 4 4 C 1.50704 * 120.00264 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53007 * 109.46792 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46890 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00332 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00386 * 179.97438 * 7 6 5 10 10 C 1.47161 * 120.98330 * 0.02562 * 9 7 6 11 11 C 1.53300 * 108.37118 * 129.38539 * 10 9 7 12 12 O 1.42968 * 109.22612 * 52.35397 * 11 10 9 13 13 C 1.42893 * 114.20887 * 297.50525 * 12 11 10 14 14 C 1.52990 * 109.55769 * 302.52586 * 13 12 11 15 15 C 1.53195 * 109.34738 * 300.95636 * 14 13 12 16 16 N 1.46932 * 108.77517 * 305.43150 * 15 14 13 17 17 C 1.36939 * 120.63776 * 233.64856 * 16 15 14 18 18 H 1.07994 * 120.00388 * 29.31573 * 17 16 15 19 19 C 1.38812 * 119.99894 * 209.31432 * 17 16 15 20 20 N 1.31629 * 119.99846 * 24.33934 * 19 17 16 21 21 Si 1.86794 * 120.00220 * 204.34404 * 19 17 16 22 22 H 1.48499 * 109.47166 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.47008 * 299.99540 * 21 19 17 24 24 H 1.48500 * 109.47268 * 59.99635 * 21 19 17 25 25 C 1.46925 * 118.71825 * 53.92877 * 16 15 14 26 26 C 1.52999 * 109.54877 * 182.22567 * 13 12 11 27 27 C 1.47149 * 120.99342 * 179.97438 * 9 7 6 28 28 H 1.09007 * 109.46760 * 269.99798 * 1 2 3 29 29 H 1.08997 * 109.47172 * 29.99227 * 1 2 3 30 30 H 1.08996 * 109.47377 * 149.99908 * 1 2 3 31 31 H 1.08999 * 109.46924 * 59.99813 * 4 2 1 32 32 H 1.08999 * 109.46618 * 299.99976 * 4 2 1 33 33 H 1.08995 * 109.47759 * 59.99756 * 5 4 2 34 34 H 1.08999 * 109.47323 * 299.99531 * 5 4 2 35 35 H 1.08999 * 109.47147 * 59.99891 * 6 5 4 36 36 H 1.08994 * 109.47253 * 299.99329 * 6 5 4 37 37 H 1.08994 * 109.68916 * 249.10678 * 10 9 7 38 38 H 1.09007 * 109.67928 * 9.67074 * 10 9 7 39 39 H 1.08998 * 109.51173 * 172.27788 * 11 10 9 40 40 H 1.09005 * 109.51524 * 292.38219 * 11 10 9 41 41 H 1.09006 * 109.48402 * 180.99735 * 14 13 12 42 42 H 1.08991 * 109.51177 * 60.93914 * 14 13 12 43 43 H 1.09000 * 109.58085 * 185.64434 * 15 14 13 44 44 H 1.08999 * 109.70030 * 65.29021 * 15 14 13 45 45 H 0.96998 * 119.99676 * 5.78285 * 20 19 17 46 46 H 1.09008 * 109.58706 * 65.84446 * 25 16 15 47 47 H 1.08998 * 109.59128 * 186.27686 * 25 16 15 48 48 H 1.08997 * 109.49447 * 178.99766 * 26 13 12 49 49 H 1.09001 * 109.49212 * 299.05162 * 26 13 12 50 50 H 1.09005 * 109.67843 * 110.76276 * 27 9 7 51 51 H 1.09000 * 109.67648 * 350.22798 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 0.0002 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0752 -0.0009 8 8 6.4156 -0.9317 -0.0004 9 7 6.8872 -3.0995 -0.0014 10 6 6.4207 -4.4952 -0.0026 11 6 7.1434 -5.2452 -1.1273 12 8 8.5532 -5.0480 -0.9947 13 6 8.9691 -3.6870 -1.1234 14 6 8.5159 -3.1389 -2.4780 15 6 9.1246 -3.9881 -3.5984 16 7 10.5825 -4.0306 -3.4208 17 6 11.4208 -3.6773 -4.4444 18 1 11.1015 -2.9519 -5.1780 19 6 12.6810 -4.2516 -4.5391 20 7 12.9113 -5.4269 -3.9929 21 14 14.0498 -3.3567 -5.4416 22 1 15.2877 -4.1760 -5.4010 23 1 13.6494 -3.1355 -6.8544 24 1 14.3005 -2.0473 -4.7874 25 6 11.1236 -4.4654 -2.1259 26 6 10.4934 -3.6055 -1.0197 27 6 8.3383 -2.8556 -0.0018 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 1.9972 -1.8763 -0.8908 32 1 1.9972 -1.8770 0.8892 33 1 4.0277 -0.4545 0.8906 34 1 4.0284 -0.4534 -0.8893 35 1 4.2666 -2.9212 -0.8917 36 1 4.2662 -2.9231 0.8882 37 1 6.6510 -4.9602 0.9559 38 1 5.3447 -4.5224 -0.1754 39 1 6.9167 -6.3092 -1.0596 40 1 6.8109 -4.8628 -2.0924 41 1 8.8491 -2.1063 -2.5823 42 1 7.4286 -3.1784 -2.5413 43 1 8.8869 -3.5428 -4.5645 44 1 8.7213 -4.9997 -3.5531 45 1 12.1818 -5.9294 -3.5978 46 1 10.8785 -5.5147 -1.9612 47 1 12.2058 -4.3354 -2.1198 48 1 10.8110 -2.5693 -1.1358 49 1 10.8121 -3.9767 -0.0457 50 1 8.7610 -3.1537 0.9577 51 1 8.5326 -1.7973 -0.1759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274856259.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:24 Heat of formation + Delta-G solvation = -125.349460 kcal Electronic energy + Delta-G solvation = -30772.126190 eV Core-core repulsion = 26671.039849 eV Total energy + Delta-G solvation = -4101.086341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89943 -40.55689 -40.04556 -38.03935 -35.82986 -35.38174 -34.80085 -32.95770 -31.78217 -31.47590 -30.04983 -29.43804 -27.73346 -25.89277 -24.70053 -23.98271 -23.56011 -22.25014 -20.66340 -20.48928 -19.89287 -19.46744 -18.29231 -17.38783 -17.26754 -16.91126 -16.71970 -16.43489 -16.19375 -16.11148 -15.86354 -15.76515 -15.42158 -15.26453 -15.17965 -15.10202 -14.65038 -14.29284 -13.78356 -13.68909 -13.41341 -13.32907 -13.16310 -13.06906 -12.95415 -12.76309 -12.71442 -12.60530 -12.51188 -12.33898 -12.13945 -11.98683 -11.92688 -11.87386 -11.74134 -11.48364 -11.26618 -10.90920 -10.85945 -10.52063 -10.48186 -9.57001 -8.93336 -8.25533 -5.43014 1.07983 1.56468 1.56769 1.64038 1.83171 1.83508 2.63354 2.73928 3.16797 3.20700 3.41694 3.49992 3.66211 3.70438 3.80941 3.96613 4.02642 4.04313 4.10519 4.19097 4.26278 4.28655 4.35990 4.46020 4.49963 4.56941 4.57993 4.60175 4.62974 4.71610 4.72946 4.77676 4.78262 4.80933 4.86469 4.90098 4.95156 5.01994 5.12124 5.14793 5.15399 5.26721 5.28179 5.37487 5.43971 5.81565 6.27145 6.33863 6.38306 6.66053 7.05049 7.10529 7.76239 8.22061 8.98198 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020554 B = 0.002360 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.970926 B =11862.119143 C =12451.019114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.346 3.654 3 O -0.519 6.519 4 C -0.165 4.165 5 C -0.098 4.098 6 C -0.127 4.127 7 C 0.503 3.497 8 O -0.593 6.593 9 N -0.613 5.613 10 C 0.076 3.924 11 C 0.031 3.969 12 O -0.381 6.381 13 C 0.129 3.871 14 C -0.136 4.136 15 C 0.155 3.845 16 N -0.616 5.616 17 C -0.358 4.358 18 H 0.045 0.955 19 C -0.074 4.074 20 N -0.938 5.938 21 Si 1.114 2.886 22 H -0.289 1.289 23 H -0.276 1.276 24 H -0.282 1.282 25 C 0.170 3.830 26 C -0.115 4.115 27 C 0.097 3.903 28 H 0.111 0.889 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.093 0.907 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.020 0.980 45 H 0.254 0.746 46 H 0.011 0.989 47 H 0.042 0.958 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.693 -0.174 12.434 30.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.226 3.774 3 O -0.397 6.397 4 C -0.202 4.202 5 C -0.136 4.136 6 C -0.166 4.166 7 C 0.294 3.706 8 O -0.473 6.473 9 N -0.347 5.347 10 C -0.045 4.045 11 C -0.046 4.046 12 O -0.300 6.300 13 C 0.089 3.911 14 C -0.175 4.175 15 C 0.030 3.970 16 N -0.341 5.341 17 C -0.488 4.488 18 H 0.063 0.937 19 C -0.270 4.270 20 N -0.580 5.580 21 Si 0.939 3.061 22 H -0.215 1.215 23 H -0.202 1.202 24 H -0.208 1.208 25 C 0.044 3.956 26 C -0.155 4.155 27 C -0.027 4.027 28 H 0.129 0.871 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.111 0.889 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.064 0.936 46 H 0.029 0.971 47 H 0.061 0.939 48 H 0.084 0.916 49 H 0.099 0.901 50 H 0.100 0.900 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.457 0.762 12.050 28.175 hybrid contribution -1.178 0.454 0.036 1.263 sum -26.635 1.215 12.086 29.274 Atomic orbital electron populations 1.22327 0.91709 1.05796 1.05891 1.25460 0.93733 0.90312 0.67942 1.90463 1.73390 1.37466 1.38421 1.22240 0.92974 0.97073 1.07879 1.21079 0.94891 0.95966 1.01651 1.21785 0.87375 0.99929 1.07522 1.21680 0.90664 0.83786 0.74469 1.90713 1.81235 1.23421 1.51919 1.48303 1.05553 1.07729 1.73069 1.22742 1.01949 0.79242 1.00586 1.23279 0.80754 1.02681 0.97876 1.88025 1.23984 1.25142 1.92836 1.21408 0.94208 0.82493 0.93015 1.22298 0.99975 0.99264 0.95978 1.20828 0.84028 0.96311 0.95875 1.44334 1.01156 1.79148 1.09458 1.20176 1.00055 1.20397 1.08185 0.93715 1.27225 1.02309 0.95971 1.01527 1.70893 1.35735 1.10536 1.40803 0.82866 0.73504 0.74393 0.75360 1.21467 1.20191 1.20789 1.20699 0.96422 0.94331 0.84141 1.21999 0.92913 1.00782 0.99784 1.22087 0.81107 1.00573 0.98904 0.87108 0.90896 0.86523 0.84996 0.84593 0.93788 0.94337 0.85540 0.84832 0.88910 0.84552 0.85355 0.92961 0.93340 0.90725 0.93967 0.96183 0.93570 0.97055 0.93942 0.91612 0.90089 0.89951 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.03 10.25 71.23 0.73 -0.30 16 2 C 0.35 4.62 7.27 29.10 0.21 4.83 16 3 O -0.52 -13.47 16.72 -1.46 -0.02 -13.49 16 4 C -0.16 -1.15 5.62 29.85 0.17 -0.98 16 5 C -0.10 -1.66 3.79 30.59 0.12 -1.55 16 6 C -0.13 -1.51 4.07 29.85 0.12 -1.39 16 7 C 0.50 12.11 7.71 87.66 0.68 12.79 16 8 O -0.59 -21.02 15.45 -3.04 -0.05 -21.07 16 9 N -0.61 -13.72 2.52 -817.50 -2.06 -15.78 16 10 C 0.08 1.04 6.54 86.35 0.56 1.61 16 11 C 0.03 0.62 6.60 72.08 0.48 1.09 16 12 O -0.38 -11.85 9.00 -148.98 -1.34 -13.19 16 13 C 0.13 4.29 0.68 -10.73 -0.01 4.29 16 14 C -0.14 -4.95 4.33 30.66 0.13 -4.81 16 15 C 0.15 6.82 6.28 86.36 0.54 7.36 16 16 N -0.62 -32.38 2.83 -698.23 -1.97 -34.36 16 17 C -0.36 -20.90 9.48 84.03 0.80 -20.10 16 18 H 0.05 2.63 7.94 -2.91 -0.02 2.61 16 19 C -0.07 -4.31 4.69 84.86 0.40 -3.91 16 20 N -0.94 -58.43 12.45 21.65 0.27 -58.16 16 21 Si 1.11 52.45 29.98 68.60 2.06 54.51 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 C 0.17 8.36 4.49 86.51 0.39 8.75 16 26 C -0.12 -4.48 5.12 30.80 0.16 -4.32 16 27 C 0.10 2.80 5.29 86.32 0.46 3.25 16 28 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.12 -0.12 8.12 -2.39 -0.02 -0.14 16 31 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.14 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.04 1.01 8.06 -2.39 -0.02 0.99 16 34 H 0.04 0.93 8.06 -2.39 -0.02 0.91 16 35 H 0.13 0.77 7.66 -2.39 -0.02 0.75 16 36 H 0.13 0.60 8.01 -2.39 -0.02 0.58 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.14 0.64 6.05 -2.38 -0.01 0.63 16 39 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.12 6.29 -2.38 -0.02 1.10 16 41 H 0.05 1.95 8.14 -2.38 -0.02 1.94 16 42 H 0.07 2.35 6.16 -2.39 -0.01 2.34 16 43 H 0.04 1.89 7.93 -2.39 -0.02 1.87 16 44 H 0.02 0.88 7.83 -2.39 -0.02 0.86 16 45 H 0.25 16.21 6.72 -92.71 -0.62 15.59 16 46 H 0.01 0.59 7.54 -2.38 -0.02 0.57 16 47 H 0.04 2.36 6.38 -2.39 -0.02 2.34 16 48 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 50 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 51 H 0.08 2.55 7.07 -2.39 -0.02 2.53 16 Total: -1.00 -88.24 393.73 3.86 -84.38 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.05 Total: 10.57 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 5.93 Total: 6.59 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -3.77 Total: -108.30 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -1.41 Total: -47.75 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 2.06 Total: 54.51 kcal Total: -88.24 3.86 -84.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274856259.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.970 kcal (2) G-P(sol) polarization free energy of solvation -88.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds