Wall clock time and date at job start Tue Mar 31 2020 20:37:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 N 1.46504 * 109.46730 * 2 1
4 4 C 1.36940 * 119.99581 * 269.66117 * 3 2 1
5 5 H 1.08002 * 120.00387 * 321.75620 * 4 3 2
6 6 C 1.38816 * 119.99710 * 141.76317 * 4 3 2
7 7 N 1.31616 * 119.99772 * 157.52937 * 6 4 3
8 8 Si 1.86793 * 119.99994 * 337.52504 * 6 4 3
9 9 H 1.48501 * 109.47095 * 95.68377 * 8 6 4
10 10 H 1.48502 * 109.47263 * 215.68775 * 8 6 4
11 11 H 1.48502 * 109.47430 * 335.68690 * 8 6 4
12 12 C 1.46496 * 120.00122 * 89.66505 * 3 2 1
13 13 C 1.53002 * 109.47187 * 89.99613 * 12 3 2
14 14 C 1.53043 * 109.46104 * 184.99772 * 13 12 3
15 15 C 1.53193 * 109.31263 * 178.61530 * 14 13 12
16 16 N 1.46930 * 108.89333 * 54.56325 * 15 14 13
17 17 C 1.34768 * 120.62637 * 126.46904 * 16 15 14
18 18 O 1.21282 * 120.00317 * 359.97438 * 17 16 15
19 19 C 1.50706 * 119.99772 * 179.97438 * 17 16 15
20 20 C 1.53001 * 109.47223 * 179.97438 * 19 17 16
21 21 H 1.08997 * 110.62147 * 51.90464 * 20 19 17
22 22 C 1.54372 * 110.69936 * 288.62643 * 20 19 17
23 23 O 1.45950 * 105.06922 * 223.78943 * 22 20 19
24 24 C 1.34564 * 108.39795 * 32.43945 * 23 22 20
25 25 O 1.20830 * 125.94337 * 146.64050 * 24 23 22
26 26 C 1.51501 * 108.11396 * 326.66585 * 24 23 22
27 27 C 1.46958 * 118.71512 * 306.64311 * 16 15 14
28 28 C 1.53038 * 109.46046 * 64.93102 * 13 12 3
29 29 H 1.09004 * 109.46899 * 300.00463 * 1 2 3
30 30 H 1.08997 * 109.47079 * 60.00006 * 1 2 3
31 31 H 1.08997 * 109.47282 * 180.02562 * 1 2 3
32 32 H 1.08994 * 109.47033 * 240.00043 * 2 1 3
33 33 H 1.09002 * 109.46939 * 119.99539 * 2 1 3
34 34 H 0.97003 * 119.99620 * 179.97438 * 7 6 4
35 35 H 1.08994 * 109.47268 * 329.99710 * 12 3 2
36 36 H 1.09005 * 109.47063 * 209.99329 * 12 3 2
37 37 H 1.09001 * 109.44840 * 304.96648 * 13 12 3
38 38 H 1.09002 * 109.49238 * 58.66578 * 14 13 12
39 39 H 1.08993 * 109.52363 * 298.58214 * 14 13 12
40 40 H 1.08998 * 109.58455 * 174.42551 * 15 14 13
41 41 H 1.09007 * 109.58150 * 294.70738 * 15 14 13
42 42 H 1.08994 * 109.47066 * 299.99583 * 19 17 16
43 43 H 1.08999 * 109.46795 * 59.99837 * 19 17 16
44 44 H 1.08993 * 110.32482 * 342.68811 * 22 20 19
45 45 H 1.09006 * 110.32584 * 104.89305 * 22 20 19
46 46 H 1.09004 * 110.40540 * 261.59392 * 26 24 23
47 47 H 1.08999 * 110.40884 * 139.17164 * 26 24 23
48 48 H 1.09000 * 109.47023 * 293.57061 * 27 16 15
49 49 H 1.08997 * 109.70897 * 173.28579 * 27 16 15
50 50 H 1.09001 * 109.49709 * 301.33844 * 28 13 12
51 51 H 1.09004 * 109.49819 * 61.43419 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2531 2.0244 -1.1860
5 1 2.6816 1.4846 -2.0175
6 6 1.9405 3.3703 -1.3193
7 7 2.5374 4.0964 -2.2406
8 14 0.6725 4.1509 -0.1914
9 1 1.3613 4.8032 0.9511
10 1 -0.1036 5.1667 -0.9470
11 1 -0.2482 3.1032 0.3185
12 6 2.2554 2.0744 1.2687
13 6 3.6980 1.8349 1.7188
14 6 3.9097 2.4535 3.1026
15 6 5.3447 2.1818 3.5648
16 7 6.2757 2.6685 2.5375
17 6 7.2674 3.5226 2.8589
18 8 7.3976 3.8971 4.0051
19 6 8.2146 4.0124 1.7940
20 6 9.2370 4.9636 2.4191
21 1 9.7098 4.5029 3.2864
22 6 8.5728 6.3033 2.8025
23 8 9.5104 7.3315 2.3621
24 6 10.1400 6.8876 1.2588
25 8 10.5141 7.5684 0.3333
26 6 10.2978 5.3856 1.3786
27 6 6.1020 2.2090 1.1525
28 6 4.6585 2.4803 0.7173
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.8934 -0.5138 -0.8899
33 1 1.8934 -0.5138 0.8900
34 1 2.3187 5.0368 -2.3340
35 1 1.5705 1.6918 2.0253
36 1 2.0892 3.1434 1.1353
37 1 3.8899 0.7630 1.7670
38 1 3.2093 2.0099 3.8103
39 1 3.7419 3.5291 3.0502
40 1 5.5311 2.7034 4.5036
41 1 5.4859 1.1104 3.7078
42 1 8.7327 3.1626 1.3498
43 1 7.6529 4.5392 1.0226
44 1 7.6193 6.4145 2.2863
45 1 8.4288 6.3595 3.8815
46 1 11.2979 5.1355 1.7327
47 1 10.1020 4.9051 0.4200
48 1 6.3056 1.1396 1.0963
49 1 6.7881 2.7465 0.4981
50 1 4.4911 2.0559 -0.2726
51 1 4.4837 3.5558 0.6869
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001274945331.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:37:43
Heat of formation + Delta-G solvation = -102.584816 kcal
Electronic energy + Delta-G solvation = -30909.691608 eV
Core-core repulsion = 26809.592417 eV
Total energy + Delta-G solvation = -4100.099192 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.26997 -40.09417 -38.03292 -37.54346 -35.99120 -34.49562 -33.02228 -31.98362
-31.02025 -29.50728 -29.10313 -27.65193 -26.52678 -24.05227 -23.17545 -23.01874
-21.69075 -21.48040 -20.40577 -19.81876 -18.86787 -17.58915 -16.99079 -16.88545
-16.68278 -16.60760 -15.81340 -15.49689 -15.21427 -14.60247 -14.56152 -14.08196
-13.94946 -13.78263 -13.57783 -13.43933 -13.30962 -13.23533 -12.90812 -12.72195
-12.55551 -12.29717 -12.13511 -11.91153 -11.71057 -11.57178 -11.51512 -11.36241
-11.02883 -10.95873 -10.80954 -10.77671 -10.62721 -10.42015 -10.20824 -10.14025
-9.94774 -9.81377 -9.68658 -9.52257 -8.57573 -8.54471 -6.86796 -6.07702
-3.47212 1.71094 2.54545 2.95901 3.19649 3.24484 3.42531 3.46908
3.74150 3.92994 4.22065 4.35560 4.46051 4.65068 4.84581 4.88420
4.99970 5.06317 5.14323 5.19777 5.23906 5.27119 5.27692 5.32089
5.41161 5.46229 5.53152 5.66469 5.71943 5.74579 5.87250 5.89382
6.04617 6.07335 6.17024 6.23843 6.29563 6.40088 6.45041 6.47474
6.47977 6.62009 6.63293 6.75594 6.96045 7.01980 7.17434 7.21302
7.42588 7.99656 8.10029 8.30795 8.93713 9.65203 10.07934 11.07577
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.013845 B = 0.003097 C = 0.002786
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2021.843417 B = 9039.995146 C =10046.647280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.145 3.855
3 N -0.606 5.606
4 C -0.264 4.264
5 H 0.078 0.922
6 C 0.042 3.958
7 N -0.897 5.897
8 Si 0.869 3.131
9 H -0.288 1.288
10 H -0.303 1.303
11 H -0.268 1.268
12 C 0.143 3.857
13 C -0.099 4.099
14 C -0.132 4.132
15 C 0.115 3.885
16 N -0.604 5.604
17 C 0.514 3.486
18 O -0.553 6.553
19 C -0.138 4.138
20 C -0.104 4.104
21 H 0.110 0.890
22 C 0.063 3.937
23 O -0.355 6.355
24 C 0.485 3.515
25 O -0.451 6.451
26 C -0.184 4.184
27 C 0.102 3.898
28 C -0.117 4.117
29 H 0.039 0.961
30 H 0.055 0.945
31 H 0.037 0.963
32 H 0.050 0.950
33 H 0.036 0.964
34 H 0.262 0.738
35 H 0.036 0.964
36 H 0.052 0.948
37 H 0.063 0.937
38 H 0.069 0.931
39 H 0.062 0.938
40 H 0.086 0.914
41 H 0.064 0.936
42 H 0.105 0.895
43 H 0.103 0.897
44 H 0.084 0.916
45 H 0.119 0.881
46 H 0.117 0.883
47 H 0.114 0.886
48 H 0.066 0.934
49 H 0.080 0.920
50 H 0.109 0.891
51 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.761 -4.909 10.427 15.767
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.229 4.229
2 C 0.020 3.980
3 N -0.328 5.328
4 C -0.392 4.392
5 H 0.096 0.904
6 C -0.158 4.158
7 N -0.538 5.538
8 Si 0.700 3.300
9 H -0.216 1.216
10 H -0.232 1.232
11 H -0.193 1.193
12 C 0.017 3.983
13 C -0.120 4.120
14 C -0.171 4.171
15 C -0.007 4.007
16 N -0.337 5.337
17 C 0.302 3.698
18 O -0.432 6.432
19 C -0.178 4.178
20 C -0.123 4.123
21 H 0.128 0.872
22 C -0.011 4.011
23 O -0.273 6.273
24 C 0.324 3.676
25 O -0.333 6.333
26 C -0.223 4.223
27 C -0.020 4.020
28 C -0.155 4.155
29 H 0.058 0.942
30 H 0.074 0.926
31 H 0.056 0.944
32 H 0.069 0.931
33 H 0.054 0.946
34 H 0.072 0.928
35 H 0.054 0.946
36 H 0.070 0.930
37 H 0.081 0.919
38 H 0.087 0.913
39 H 0.081 0.919
40 H 0.105 0.895
41 H 0.082 0.918
42 H 0.123 0.877
43 H 0.121 0.879
44 H 0.102 0.898
45 H 0.137 0.863
46 H 0.136 0.864
47 H 0.132 0.868
48 H 0.085 0.915
49 H 0.098 0.902
50 H 0.127 0.873
51 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 11.024 -4.048 10.568 15.799
hybrid contribution -1.024 0.428 0.492 1.214
sum 10.000 -3.620 11.059 15.343
Atomic orbital electron populations
1.22347 0.99926 0.99084 1.01555 1.20854 0.91587 0.86795 0.98798
1.44175 1.75570 1.11178 1.01921 1.18689 1.36252 0.93172 0.91124
0.90408 1.25425 0.97406 0.96929 0.96088 1.69851 1.41139 1.07061
1.35750 0.87067 0.84066 0.78809 0.80104 1.21623 1.23153 1.19264
1.21161 0.92385 0.97008 0.87724 1.21675 0.98608 0.99059 0.92653
1.21995 0.95192 1.01736 0.98205 1.21569 0.88712 0.98935 0.91481
1.48224 1.29598 1.45488 1.10352 1.20475 0.81387 0.78417 0.89517
1.90663 1.73154 1.58118 1.21276 1.21852 0.96778 1.00835 0.98345
1.22163 0.95265 0.95795 0.99065 0.87220 1.24218 0.90579 0.83240
1.03018 1.87298 1.53245 1.45620 1.41158 1.23293 0.74634 0.90107
0.79523 1.90718 1.47358 1.65869 1.29403 1.23034 1.02382 0.94343
1.02516 1.22029 0.99882 0.99544 0.80524 1.21893 0.90500 1.01595
1.01514 0.94178 0.92617 0.94414 0.93150 0.94604 0.92765 0.94558
0.92994 0.91890 0.91271 0.91876 0.89530 0.91802 0.87661 0.87928
0.89779 0.86288 0.86448 0.86811 0.91531 0.90169 0.87259 0.92189
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.94 10.24 37.16 0.38 -2.56 16
2 C 0.15 2.61 6.39 -4.04 -0.03 2.59 16
3 N -0.61 -12.70 1.94 -173.23 -0.34 -13.03 16
4 C -0.26 -6.54 7.81 -15.06 -0.12 -6.65 16
5 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16
6 C 0.04 1.12 5.30 -17.43 -0.09 1.03 16
7 N -0.90 -25.24 13.97 55.49 0.78 -24.46 16
8 Si 0.87 21.15 25.08 -169.99 -4.26 16.89 16
9 H -0.29 -6.89 6.68 56.52 0.38 -6.51 16
10 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16
11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
12 C 0.14 2.75 4.01 -4.04 -0.02 2.73 16
13 C -0.10 -1.56 2.36 -90.58 -0.21 -1.77 16
14 C -0.13 -1.81 5.36 -26.61 -0.14 -1.95 16
15 C 0.12 1.42 6.43 -3.71 -0.02 1.40 16
16 N -0.60 -7.46 2.98 -172.74 -0.51 -7.97 16
17 C 0.51 6.15 7.53 -10.99 -0.08 6.06 16
18 O -0.55 -7.91 14.68 5.56 0.08 -7.83 16
19 C -0.14 -1.19 3.25 -27.88 -0.09 -1.28 16
20 C -0.10 -0.84 2.75 -89.13 -0.25 -1.09 16
21 H 0.11 0.86 7.88 -51.93 -0.41 0.45 16
22 C 0.06 0.63 6.61 37.88 0.25 0.88 16
23 O -0.36 -4.32 11.17 -39.74 -0.44 -4.76 16
24 C 0.48 5.77 8.50 36.40 0.31 6.07 16
25 O -0.45 -6.98 18.00 -18.32 -0.33 -7.31 16
26 C -0.18 -1.39 6.61 -26.72 -0.18 -1.57 16
27 C 0.10 1.25 6.33 -3.69 -0.02 1.22 16
28 C -0.12 -1.92 4.96 -26.61 -0.13 -2.05 16
29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16
33 H 0.04 0.57 8.07 -51.93 -0.42 0.15 16
34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
35 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16
36 H 0.05 1.14 3.38 -51.93 -0.18 0.96 16
37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16
40 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16
41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.11 0.68 7.95 -51.93 -0.41 0.26 16
43 H 0.10 0.89 7.51 -51.93 -0.39 0.50 16
44 H 0.08 0.85 7.69 -51.93 -0.40 0.45 16
45 H 0.12 1.14 8.07 -51.93 -0.42 0.72 16
46 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16
47 H 0.11 0.73 7.74 -51.93 -0.40 0.33 16
48 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
49 H 0.08 0.84 5.95 -51.93 -0.31 0.53 16
50 H 0.11 2.13 6.26 -51.93 -0.32 1.81 16
51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 394.55 15.07 5.95 5.95
Total: -1.00 -30.86 394.55 -8.20 -39.06
By element:
Atomic # 1 Polarization: 9.08 SS G_CDS: -8.67 Total: 0.41 kcal
Atomic # 6 Polarization: 3.50 SS G_CDS: -0.44 Total: 3.06 kcal
Atomic # 7 Polarization: -45.39 SS G_CDS: -0.08 Total: -45.46 kcal
Atomic # 8 Polarization: -19.20 SS G_CDS: -0.69 Total: -19.90 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -4.26 Total: 16.89 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -30.86 -8.20 -39.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274945331.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.525 kcal
(2) G-P(sol) polarization free energy of solvation -30.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.387 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal
(6) G-S(sol) free energy of system = (1) + (5) -102.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds