Wall clock time and date at job start Tue Mar 31 2020 20:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47513 * 2 1 4 4 C 1.36935 * 119.99848 * 275.24305 * 3 2 1 5 5 H 1.07993 * 120.00524 * 37.70503 * 4 3 2 6 6 C 1.38813 * 119.99732 * 217.69976 * 4 3 2 7 7 N 1.31622 * 119.99956 * 21.64228 * 6 4 3 8 8 Si 1.86800 * 120.00195 * 201.63774 * 6 4 3 9 9 H 1.48496 * 109.46994 * 60.00320 * 8 6 4 10 10 H 1.48499 * 109.47395 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47057 * 300.00416 * 8 6 4 12 12 C 1.46505 * 119.99777 * 95.23638 * 3 2 1 13 13 C 1.52994 * 109.47264 * 270.00357 * 12 3 2 14 14 C 1.53038 * 109.46002 * 175.00227 * 13 12 3 15 15 C 1.53198 * 109.31147 * 181.37137 * 14 13 12 16 16 N 1.46926 * 108.77657 * 305.36493 * 15 14 13 17 17 C 1.34780 * 120.62773 * 233.58618 * 16 15 14 18 18 O 1.21277 * 119.99923 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99485 * 180.27663 * 17 16 15 20 20 C 1.53005 * 109.47025 * 179.72506 * 19 17 16 21 21 H 1.09003 * 110.76706 * 305.69746 * 20 19 17 22 22 C 1.54575 * 110.86728 * 69.22083 * 20 19 17 23 23 O 1.46153 * 104.28512 * 144.85860 * 22 20 19 24 24 C 1.34061 * 110.03159 * 329.67540 * 23 22 20 25 25 O 1.20831 * 125.09727 * 200.64216 * 24 23 22 26 26 C 1.51327 * 109.81019 * 20.68119 * 24 23 22 27 27 C 1.46925 * 118.73829 * 53.86259 * 16 15 14 28 28 C 1.53038 * 109.45131 * 295.06373 * 13 12 3 29 29 H 1.09000 * 109.46965 * 299.99824 * 1 2 3 30 30 H 1.08997 * 109.47348 * 59.99799 * 1 2 3 31 31 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46965 * 240.00176 * 2 1 3 33 33 H 1.09003 * 109.47498 * 120.00615 * 2 1 3 34 34 H 0.96999 * 120.00125 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.46426 * 150.00352 * 12 3 2 36 36 H 1.08998 * 109.46839 * 30.00534 * 12 3 2 37 37 H 1.09001 * 109.46142 * 55.02926 * 13 12 3 38 38 H 1.09001 * 109.49942 * 61.42093 * 14 13 12 39 39 H 1.09002 * 109.49956 * 301.32338 * 14 13 12 40 40 H 1.09003 * 109.58278 * 185.57769 * 15 14 13 41 41 H 1.09003 * 109.58636 * 65.15565 * 15 14 13 42 42 H 1.09004 * 109.47613 * 299.71985 * 19 17 16 43 43 H 1.09002 * 109.47286 * 59.72575 * 19 17 16 44 44 H 1.09000 * 110.43804 * 263.75581 * 22 20 19 45 45 H 1.08995 * 110.43530 * 26.27756 * 22 20 19 46 46 H 1.09004 * 110.37130 * 238.84514 * 26 24 23 47 47 H 1.09004 * 110.46224 * 116.57134 * 26 24 23 48 48 H 1.08998 * 109.58870 * 65.92320 * 27 16 15 49 49 H 1.08995 * 109.58338 * 186.35674 * 27 16 15 50 50 H 1.09004 * 109.50216 * 298.57409 * 28 13 12 51 51 H 1.09003 * 109.50076 * 58.63518 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1444 2.0628 -1.1809 5 1 1.4117 1.9286 -1.9628 6 6 3.2142 2.9263 -1.3731 7 7 4.3070 2.7908 -0.6521 8 14 3.1028 4.2806 -2.6548 9 1 1.9692 5.1815 -2.3258 10 1 4.3676 5.0587 -2.6640 11 1 2.8834 3.6777 -3.9941 12 6 2.3717 2.0331 1.2635 13 6 1.1405 2.7389 1.8350 14 6 1.4761 3.3136 3.2132 15 6 0.2315 3.9896 3.7970 16 7 -0.2634 4.9823 2.8334 17 6 -0.4675 6.2607 3.2083 18 8 -0.2428 6.6010 4.3505 19 6 -0.9814 7.2657 2.2099 20 6 -1.1301 8.6288 2.8887 21 1 -1.7510 8.5505 3.7812 22 6 0.2534 9.2272 3.2312 23 8 0.0829 10.6654 3.0347 24 6 -0.8298 10.8934 2.0796 25 8 -0.9365 11.9201 1.4514 26 6 -1.7072 9.6726 1.9068 27 6 -0.5373 4.5535 1.4551 28 6 0.7212 3.8724 0.8962 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.0547 3.3940 -0.7866 35 1 3.1604 2.7645 1.0867 36 1 2.7232 1.2840 1.9730 37 1 0.3230 2.0240 1.9290 38 1 2.2768 4.0469 3.1164 39 1 1.7971 2.5089 3.8746 40 1 0.4901 4.4857 4.7325 41 1 -0.5396 3.2410 3.9789 42 1 -0.2777 7.3474 1.3814 43 1 -1.9507 6.9401 1.8325 44 1 0.5167 9.0092 4.2662 45 1 1.0141 8.8391 2.5540 46 1 -1.6471 9.3040 0.8827 47 1 -2.7401 9.9060 2.1651 48 1 -1.3698 3.8499 1.4499 49 1 -0.7861 5.4217 0.8450 50 1 1.5289 4.6004 0.8212 51 1 0.5054 3.4655 -0.0918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274945332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:46 Heat of formation + Delta-G solvation = -110.084671 kcal Electronic energy + Delta-G solvation = -30993.548421 eV Core-core repulsion = 26893.124011 eV Total energy + Delta-G solvation = -4100.424410 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.28454 -40.08741 -37.95359 -37.49735 -35.78968 -34.55870 -32.85830 -31.92854 -30.93753 -29.31517 -28.88701 -27.61536 -26.44420 -24.29258 -23.05465 -22.58811 -21.61153 -21.52595 -20.37949 -19.83241 -18.81950 -17.64105 -16.96389 -16.91350 -16.66923 -16.47158 -15.77759 -15.43218 -14.96711 -14.48303 -14.20325 -14.17734 -13.95662 -13.84960 -13.59904 -13.53297 -13.20650 -13.10141 -12.87977 -12.58926 -12.37732 -12.34748 -12.15924 -11.76493 -11.56695 -11.54621 -11.40320 -11.18851 -10.96621 -10.84196 -10.80840 -10.64969 -10.49844 -10.47018 -10.34572 -10.14075 -9.99219 -9.77324 -9.59970 -9.47637 -8.53813 -8.50455 -6.59730 -5.84579 -3.42573 1.82019 2.54056 2.95396 3.05072 3.26995 3.34669 3.36691 3.65466 3.87908 4.18779 4.35328 4.39746 4.62485 4.83830 4.97838 5.04434 5.09155 5.12248 5.20302 5.26756 5.27808 5.36098 5.43367 5.45933 5.46425 5.65331 5.67240 5.68715 5.84654 5.95652 5.98869 6.20849 6.22849 6.32759 6.34148 6.41602 6.51262 6.56607 6.59654 6.78471 6.85096 6.89111 6.92993 7.08889 7.18091 7.21304 7.43313 7.65986 7.75436 8.10060 8.46316 9.14565 9.77073 10.36930 11.14412 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003290 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.852547 B = 8508.554918 C = 9870.196936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.257 4.257 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.884 5.884 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.153 3.847 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.114 3.886 16 N -0.602 5.602 17 C 0.512 3.488 18 O -0.552 6.552 19 C -0.136 4.136 20 C -0.105 4.105 21 H 0.108 0.892 22 C 0.062 3.938 23 O -0.349 6.349 24 C 0.484 3.516 25 O -0.462 6.462 26 C -0.185 4.185 27 C 0.100 3.900 28 C -0.115 4.115 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.255 0.745 35 H 0.092 0.908 36 H 0.021 0.979 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.123 0.877 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.879 4.652 7.325 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.387 4.387 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.207 1.207 12 C 0.026 3.974 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.008 4.008 16 N -0.335 5.335 17 C 0.300 3.700 18 O -0.431 6.431 19 C -0.175 4.175 20 C -0.124 4.124 21 H 0.126 0.874 22 C -0.012 4.012 23 O -0.266 6.266 24 C 0.324 3.676 25 O -0.346 6.346 26 C -0.224 4.224 27 C -0.022 4.022 28 C -0.153 4.153 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.123 0.877 44 H 0.141 0.859 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.076 0.924 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.481 5.517 7.724 14.897 hybrid contribution -0.106 0.441 -0.834 0.950 sum -11.587 5.957 6.890 14.738 Atomic orbital electron populations 1.22362 1.00197 0.98829 1.01034 1.20828 0.91635 0.87565 0.98580 1.43746 1.76079 1.08070 1.02528 1.18854 1.04470 1.21189 0.94174 0.92457 1.25120 0.94206 1.01266 0.97679 1.69995 1.03026 1.37280 1.42329 0.86644 0.77028 0.82741 0.82060 1.20737 1.21682 1.20732 1.20938 0.94551 0.96306 0.85602 1.21807 1.01282 0.96708 0.92450 1.21954 0.96785 0.99925 0.98066 1.21627 0.96305 0.90475 0.92400 1.48201 1.64281 1.08699 1.12289 1.20453 0.77870 0.82828 0.88800 1.90664 1.53028 1.78998 1.20454 1.21770 1.04151 0.92887 0.98727 1.22263 0.97428 0.93336 0.99369 0.87382 1.24399 0.97133 0.74285 1.05342 1.87081 1.58138 1.28597 1.52750 1.23088 0.79846 0.88525 0.76107 1.90720 1.70436 1.30805 1.42651 1.23001 1.01969 0.94369 1.03036 1.22135 0.99656 0.99653 0.80783 1.21964 0.94957 0.97402 1.01003 0.93788 0.93307 0.94772 0.94045 0.95024 0.93519 0.88998 0.96067 0.92615 0.91808 0.91391 0.89604 0.91968 0.88005 0.87723 0.85922 0.89597 0.86639 0.86552 0.91539 0.90528 0.92358 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 10.21 37.15 0.38 -2.31 16 2 C 0.14 2.73 6.44 -4.05 -0.03 2.70 16 3 N -0.58 -12.88 2.31 -173.24 -0.40 -13.28 16 4 C -0.26 -6.25 7.35 -15.06 -0.11 -6.36 16 5 H 0.06 1.41 7.92 -52.49 -0.42 1.00 16 6 C 0.02 0.45 4.95 -17.43 -0.09 0.37 16 7 N -0.88 -23.73 11.50 55.49 0.64 -23.09 16 8 Si 0.89 19.85 29.61 -169.99 -5.03 14.82 16 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.15 3.14 4.84 -4.04 -0.02 3.12 16 13 C -0.10 -1.66 2.36 -90.58 -0.21 -1.87 16 14 C -0.13 -1.84 5.36 -26.61 -0.14 -1.98 16 15 C 0.11 1.45 6.43 -3.71 -0.02 1.43 16 16 N -0.60 -7.43 2.97 -172.50 -0.51 -7.94 16 17 C 0.51 6.06 7.51 -10.99 -0.08 5.98 16 18 O -0.55 -7.89 14.37 5.56 0.08 -7.81 16 19 C -0.14 -1.10 3.35 -27.88 -0.09 -1.20 16 20 C -0.10 -0.83 2.75 -89.01 -0.24 -1.08 16 21 H 0.11 0.86 7.97 -51.93 -0.41 0.45 16 22 C 0.06 0.60 6.67 37.99 0.25 0.85 16 23 O -0.35 -4.20 11.06 -38.47 -0.43 -4.62 16 24 C 0.48 5.65 8.58 36.31 0.31 5.97 16 25 O -0.46 -7.03 18.00 -18.41 -0.33 -7.36 16 26 C -0.19 -1.37 6.52 -26.79 -0.17 -1.54 16 27 C 0.10 1.20 6.37 -3.49 -0.02 1.18 16 28 C -0.12 -1.86 4.97 -26.39 -0.13 -1.99 16 29 H 0.04 0.69 6.47 -51.93 -0.34 0.36 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.84 8.08 -51.93 -0.42 0.43 16 33 H 0.03 0.58 7.83 -51.93 -0.41 0.18 16 34 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 35 H 0.09 2.21 5.54 -51.93 -0.29 1.92 16 36 H 0.02 0.43 7.86 -51.93 -0.41 0.02 16 37 H 0.06 0.91 6.47 -51.93 -0.34 0.57 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 0.79 7.57 -51.93 -0.39 0.39 16 43 H 0.10 0.64 7.93 -51.93 -0.41 0.22 16 44 H 0.12 1.21 7.68 -51.93 -0.40 0.81 16 45 H 0.09 0.80 7.82 -51.93 -0.41 0.39 16 46 H 0.12 0.70 7.80 -51.93 -0.40 0.29 16 47 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.08 0.75 5.94 -51.93 -0.31 0.45 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.10 1.84 6.26 -51.93 -0.32 1.52 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -29.79 395.35 -9.00 -38.80 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.55 Total: 1.26 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.43 Total: 3.27 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.27 Total: -44.31 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.68 Total: -19.79 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.79 -9.00 -38.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274945332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.289 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds