Wall clock time and date at job start Tue Mar 31 2020 20:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46500 * 109.47513 * 2 1 4 4 C 1.36935 * 119.99848 * 275.24305 * 3 2 1 5 5 H 1.07993 * 120.00524 * 37.70503 * 4 3 2 6 6 C 1.38813 * 119.99732 * 217.69976 * 4 3 2 7 7 N 1.31622 * 119.99956 * 21.64228 * 6 4 3 8 8 Si 1.86800 * 120.00195 * 201.63774 * 6 4 3 9 9 H 1.48496 * 109.46994 * 60.00320 * 8 6 4 10 10 H 1.48499 * 109.47395 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47057 * 300.00416 * 8 6 4 12 12 C 1.46505 * 119.99777 * 95.23638 * 3 2 1 13 13 C 1.52994 * 109.47264 * 270.00357 * 12 3 2 14 14 C 1.53038 * 109.46002 * 175.00227 * 13 12 3 15 15 C 1.53198 * 109.31147 * 181.37137 * 14 13 12 16 16 N 1.46926 * 108.77657 * 305.36493 * 15 14 13 17 17 C 1.34780 * 120.62773 * 233.58618 * 16 15 14 18 18 O 1.21277 * 119.99923 * 359.97438 * 17 16 15 19 19 C 1.50696 * 119.99485 * 180.27663 * 17 16 15 20 20 C 1.53005 * 109.47025 * 179.72506 * 19 17 16 21 21 H 1.09003 * 110.76706 * 305.69746 * 20 19 17 22 22 C 1.54575 * 110.86728 * 69.22083 * 20 19 17 23 23 O 1.46153 * 104.28512 * 144.85860 * 22 20 19 24 24 C 1.34061 * 110.03159 * 329.67540 * 23 22 20 25 25 O 1.20831 * 125.09727 * 200.64216 * 24 23 22 26 26 C 1.51327 * 109.81019 * 20.68119 * 24 23 22 27 27 C 1.46925 * 118.73829 * 53.86259 * 16 15 14 28 28 C 1.53038 * 109.45131 * 295.06373 * 13 12 3 29 29 H 1.09000 * 109.46965 * 299.99824 * 1 2 3 30 30 H 1.08997 * 109.47348 * 59.99799 * 1 2 3 31 31 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46965 * 240.00176 * 2 1 3 33 33 H 1.09003 * 109.47498 * 120.00615 * 2 1 3 34 34 H 0.96999 * 120.00125 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.46426 * 150.00352 * 12 3 2 36 36 H 1.08998 * 109.46839 * 30.00534 * 12 3 2 37 37 H 1.09001 * 109.46142 * 55.02926 * 13 12 3 38 38 H 1.09001 * 109.49942 * 61.42093 * 14 13 12 39 39 H 1.09002 * 109.49956 * 301.32338 * 14 13 12 40 40 H 1.09003 * 109.58278 * 185.57769 * 15 14 13 41 41 H 1.09003 * 109.58636 * 65.15565 * 15 14 13 42 42 H 1.09004 * 109.47613 * 299.71985 * 19 17 16 43 43 H 1.09002 * 109.47286 * 59.72575 * 19 17 16 44 44 H 1.09000 * 110.43804 * 263.75581 * 22 20 19 45 45 H 1.08995 * 110.43530 * 26.27756 * 22 20 19 46 46 H 1.09004 * 110.37130 * 238.84514 * 26 24 23 47 47 H 1.09004 * 110.46224 * 116.57134 * 26 24 23 48 48 H 1.08998 * 109.58870 * 65.92320 * 27 16 15 49 49 H 1.08995 * 109.58338 * 186.35674 * 27 16 15 50 50 H 1.09004 * 109.50216 * 298.57409 * 28 13 12 51 51 H 1.09003 * 109.50076 * 58.63518 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1444 2.0628 -1.1809 5 1 1.4117 1.9286 -1.9628 6 6 3.2142 2.9263 -1.3731 7 7 4.3070 2.7908 -0.6521 8 14 3.1028 4.2806 -2.6548 9 1 1.9692 5.1815 -2.3258 10 1 4.3676 5.0587 -2.6640 11 1 2.8834 3.6777 -3.9941 12 6 2.3717 2.0331 1.2635 13 6 1.1405 2.7389 1.8350 14 6 1.4761 3.3136 3.2132 15 6 0.2315 3.9896 3.7970 16 7 -0.2634 4.9823 2.8334 17 6 -0.4675 6.2607 3.2083 18 8 -0.2428 6.6010 4.3505 19 6 -0.9814 7.2657 2.2099 20 6 -1.1301 8.6288 2.8887 21 1 -1.7510 8.5505 3.7812 22 6 0.2534 9.2272 3.2312 23 8 0.0829 10.6654 3.0347 24 6 -0.8298 10.8934 2.0796 25 8 -0.9365 11.9201 1.4514 26 6 -1.7072 9.6726 1.9068 27 6 -0.5373 4.5535 1.4551 28 6 0.7212 3.8724 0.8962 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.0547 3.3940 -0.7866 35 1 3.1604 2.7645 1.0867 36 1 2.7232 1.2840 1.9730 37 1 0.3230 2.0240 1.9290 38 1 2.2768 4.0469 3.1164 39 1 1.7971 2.5089 3.8746 40 1 0.4901 4.4857 4.7325 41 1 -0.5396 3.2410 3.9789 42 1 -0.2777 7.3474 1.3814 43 1 -1.9507 6.9401 1.8325 44 1 0.5167 9.0092 4.2662 45 1 1.0141 8.8391 2.5540 46 1 -1.6471 9.3040 0.8827 47 1 -2.7401 9.9060 2.1651 48 1 -1.3698 3.8499 1.4499 49 1 -0.7861 5.4217 0.8450 50 1 1.5289 4.6004 0.8212 51 1 0.5054 3.4655 -0.0918 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274945332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:45 Heat of formation + Delta-G solvation = -125.617777 kcal Electronic energy + Delta-G solvation = -30994.221987 eV Core-core repulsion = 26893.124011 eV Total energy + Delta-G solvation = -4101.097976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.11978 -41.06770 -39.12690 -38.55514 -37.22467 -35.31742 -34.11111 -33.70207 -32.02961 -30.56211 -29.93559 -28.60231 -27.74193 -25.83304 -24.13732 -23.87395 -22.56087 -22.32800 -21.88542 -21.05826 -19.82594 -18.53464 -18.47681 -17.82532 -17.79061 -17.31289 -16.78843 -16.68599 -16.32981 -15.75865 -15.53010 -15.33761 -15.17051 -14.92404 -14.66092 -14.59489 -14.40303 -14.17622 -13.97929 -13.83973 -13.56108 -13.35476 -13.10516 -13.03863 -12.90374 -12.79569 -12.54167 -12.32373 -12.29756 -12.23676 -12.10273 -12.01407 -11.88257 -11.60759 -11.57872 -11.51137 -11.35557 -11.11871 -10.96329 -10.66834 -10.37445 -9.55280 -8.43870 -7.72595 -5.34437 0.95449 1.47948 1.51264 1.55856 1.66128 2.06700 2.24064 2.55777 2.93677 3.18676 3.31730 3.52590 3.65979 3.74420 3.89759 3.99531 4.15920 4.22064 4.26816 4.30112 4.40129 4.47883 4.51022 4.52430 4.59289 4.63543 4.69716 4.73625 4.82132 4.86704 4.89168 4.92120 4.95816 4.97167 5.08329 5.17304 5.18847 5.29398 5.38139 5.43144 5.49108 5.57250 5.68074 5.71037 5.76377 5.84978 5.99049 6.34154 6.50439 6.55496 7.19757 7.27892 7.98255 8.51748 9.21439 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011979 B = 0.003290 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.852547 B = 8508.554918 C = 9870.196936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.134 3.866 3 N -0.598 5.598 4 C -0.246 4.246 5 H 0.055 0.945 6 C -0.026 4.026 7 N -0.920 5.920 8 Si 0.934 3.066 9 H -0.263 1.263 10 H -0.305 1.305 11 H -0.281 1.281 12 C 0.155 3.845 13 C -0.088 4.088 14 C -0.121 4.121 15 C 0.120 3.880 16 N -0.607 5.607 17 C 0.508 3.492 18 O -0.580 6.580 19 C -0.131 4.131 20 C -0.094 4.094 21 H 0.111 0.889 22 C 0.058 3.942 23 O -0.372 6.372 24 C 0.478 3.522 25 O -0.508 6.508 26 C -0.167 4.167 27 C 0.110 3.890 28 C -0.110 4.110 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.038 0.962 34 H 0.246 0.754 35 H 0.056 0.944 36 H 0.014 0.986 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.085 0.915 49 H 0.105 0.895 50 H 0.029 0.971 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 4.297 7.251 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.377 4.377 5 H 0.073 0.927 6 C -0.223 4.223 7 N -0.564 5.564 8 Si 0.763 3.237 9 H -0.188 1.188 10 H -0.232 1.232 11 H -0.207 1.207 12 C 0.029 3.971 13 C -0.109 4.109 14 C -0.160 4.160 15 C -0.003 4.003 16 N -0.339 5.339 17 C 0.298 3.702 18 O -0.461 6.461 19 C -0.170 4.170 20 C -0.113 4.113 21 H 0.130 0.870 22 C -0.016 4.016 23 O -0.289 6.289 24 C 0.322 3.678 25 O -0.395 6.395 26 C -0.205 4.205 27 C -0.012 4.012 28 C -0.148 4.148 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.129 0.871 43 H 0.157 0.843 44 H 0.134 0.866 45 H 0.105 0.895 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.103 0.897 49 H 0.124 0.876 50 H 0.048 0.952 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.839 5.134 7.659 17.470 hybrid contribution 1.018 0.436 -0.749 1.337 sum -13.820 5.569 6.910 16.425 Atomic orbital electron populations 1.22141 0.97109 1.00516 1.00977 1.20960 0.93950 0.86069 0.98132 1.43967 1.76357 1.09219 1.02369 1.18995 1.03538 1.20532 0.94605 0.92735 1.25639 0.94014 1.03208 0.99435 1.70137 1.03710 1.38150 1.44436 0.85859 0.76747 0.80887 0.80190 1.18810 1.23224 1.20693 1.20848 0.95640 0.95450 0.85191 1.21563 0.99199 0.96780 0.93315 1.21852 0.97236 0.99702 0.97176 1.21524 0.95736 0.90892 0.92137 1.48274 1.64386 1.09023 1.12254 1.21097 0.77098 0.82898 0.89097 1.90662 1.54137 1.79311 1.22034 1.21842 1.05970 0.91479 0.97709 1.22198 0.96048 0.93348 0.99741 0.87029 1.24503 0.98663 0.73328 1.05069 1.87045 1.58744 1.30146 1.52974 1.23830 0.79868 0.89118 0.75028 1.90690 1.71591 1.32923 1.44316 1.22991 1.01958 0.91493 1.04057 1.22082 0.97529 1.00954 0.80627 1.21795 0.96250 0.96706 1.00058 0.92914 0.94170 0.92206 0.95700 0.94351 0.94448 0.92649 0.96723 0.91534 0.94088 0.90552 0.90186 0.90131 0.87053 0.84264 0.86637 0.89475 0.84369 0.83985 0.89652 0.87644 0.95245 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.46 10.21 71.98 0.73 -3.72 16 2 C 0.13 5.11 6.44 86.38 0.56 5.67 16 3 N -0.60 -26.43 2.31 -702.02 -1.62 -28.05 16 4 C -0.25 -12.02 7.35 84.03 0.62 -11.40 16 5 H 0.06 2.67 7.92 -2.91 -0.02 2.65 16 6 C -0.03 -1.31 4.95 84.86 0.42 -0.89 16 7 N -0.92 -51.12 11.50 21.65 0.25 -50.87 16 8 Si 0.93 41.06 29.61 68.60 2.03 43.09 16 9 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 10 H -0.31 -14.05 7.11 99.48 0.71 -13.35 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 12 C 0.15 6.48 4.84 86.38 0.42 6.89 16 13 C -0.09 -2.79 2.36 -10.77 -0.03 -2.81 16 14 C -0.12 -3.36 5.36 30.67 0.16 -3.19 16 15 C 0.12 2.78 6.43 86.36 0.56 3.33 16 16 N -0.61 -13.19 2.97 -818.06 -2.43 -15.62 16 17 C 0.51 10.52 7.51 87.66 0.66 11.18 16 18 O -0.58 -15.51 14.37 -3.02 -0.04 -15.56 16 19 C -0.13 -1.57 3.35 29.85 0.10 -1.47 16 20 C -0.09 -1.20 2.75 -9.75 -0.03 -1.23 16 21 H 0.11 1.41 7.97 -2.39 -0.02 1.40 16 22 C 0.06 1.05 6.67 72.52 0.48 1.53 16 23 O -0.37 -8.80 11.06 -50.13 -0.55 -9.36 16 24 C 0.48 10.62 8.58 71.44 0.61 11.24 16 25 O -0.51 -15.35 18.00 21.62 0.39 -14.96 16 26 C -0.17 -1.87 6.52 30.55 0.20 -1.67 16 27 C 0.11 2.23 6.37 86.51 0.55 2.78 16 28 C -0.11 -3.39 4.97 30.82 0.15 -3.23 16 29 H 0.05 1.49 6.47 -2.39 -0.02 1.48 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.02 1.00 8.08 -2.39 -0.02 0.99 16 33 H 0.04 1.39 7.83 -2.39 -0.02 1.37 16 34 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 35 H 0.06 2.78 5.54 -2.39 -0.01 2.77 16 36 H 0.01 0.60 7.86 -2.39 -0.02 0.58 16 37 H 0.07 1.99 6.47 -2.39 -0.02 1.98 16 38 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 1.99 7.01 -2.39 -0.02 1.98 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.11 1.23 7.57 -2.38 -0.02 1.21 16 43 H 0.14 0.81 7.93 -2.39 -0.02 0.80 16 44 H 0.12 2.25 7.68 -2.39 -0.02 2.23 16 45 H 0.09 1.53 7.82 -2.39 -0.02 1.51 16 46 H 0.14 1.01 7.80 -2.38 -0.02 0.99 16 47 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.11 1.56 5.94 -2.39 -0.01 1.54 16 50 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 2.74 6.26 -2.39 -0.01 2.73 16 Total: -1.00 -68.23 395.35 5.11 -63.12 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.91 Total: 15.20 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.17 Total: 13.01 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.80 Total: -94.53 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.21 Total: -39.88 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -68.23 5.11 -63.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274945332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.501 kcal (2) G-P(sol) polarization free energy of solvation -68.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds