Wall clock time and date at job start Tue Mar 31 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 O 1.42901 * 109.46647 * 2 1 4 4 C 1.42903 * 113.99492 * 185.53749 * 3 2 1 5 5 H 1.08997 * 109.47351 * 351.74656 * 4 3 2 6 6 C 1.50700 * 109.46892 * 231.74006 * 4 3 2 7 7 O 1.21277 * 120.00270 * 334.17738 * 6 4 3 8 8 N 1.34779 * 119.99889 * 154.17722 * 6 4 3 9 9 C 1.46652 * 125.33440 * 175.24124 * 8 6 4 10 10 C 1.53677 * 107.98330 * 179.26025 * 9 8 6 11 11 H 1.08997 * 112.77629 * 106.03156 * 10 9 8 12 12 C 1.55107 * 109.02749 * 233.79981 * 10 9 8 13 13 N 1.46753 * 107.02345 * 82.79490 * 12 10 9 14 14 C 1.36943 * 125.33286 * 198.02358 * 13 12 10 15 15 H 1.08001 * 119.99860 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99923 * 359.97438 * 14 13 12 17 17 N 1.31621 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46951 * 59.99950 * 18 16 14 20 20 H 1.48505 * 109.46909 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47144 * 300.00261 * 18 16 14 22 22 C 1.46655 * 109.33536 * 17.99901 * 13 12 10 23 23 C 1.53673 * 107.96832 * 359.29310 * 22 13 12 24 24 H 1.09006 * 112.77938 * 106.74055 * 23 22 13 25 25 C 1.46757 * 125.33110 * 355.22561 * 8 6 4 26 26 C 1.53005 * 109.46762 * 111.74313 * 4 3 2 27 27 H 1.08998 * 110.80305 * 70.61170 * 26 4 3 28 28 C 1.54809 * 110.90839 * 306.97821 * 26 4 3 29 29 C 1.54098 * 104.18570 * 220.92501 * 28 26 4 30 30 O 1.43746 * 107.29734 * 357.96771 * 29 28 26 31 31 C 1.44382 * 106.96990 * 26.51628 * 30 29 28 32 32 H 1.09002 * 109.46678 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46747 * 299.99642 * 1 2 3 34 34 H 1.08997 * 109.46821 * 60.00283 * 1 2 3 35 35 H 1.08998 * 109.46749 * 239.99821 * 2 1 3 36 36 H 1.08997 * 109.46821 * 119.99717 * 2 1 3 37 37 H 1.08997 * 109.76996 * 298.89745 * 9 8 6 38 38 H 1.08997 * 109.76722 * 59.62788 * 9 8 6 39 39 H 1.08996 * 110.21724 * 323.17120 * 12 10 9 40 40 H 1.09005 * 109.51015 * 202.02322 * 12 10 9 41 41 H 0.97002 * 120.00217 * 180.02562 * 17 16 14 42 42 H 1.08991 * 109.77487 * 239.65794 * 22 13 12 43 43 H 1.09000 * 109.76681 * 118.91481 * 22 13 12 44 44 H 1.09002 * 110.01859 * 317.76824 * 25 8 6 45 45 H 1.08992 * 110.02313 * 79.12207 * 25 8 6 46 46 H 1.08997 * 110.48636 * 339.60092 * 28 26 4 47 47 H 1.09003 * 110.48728 * 102.11338 * 28 26 4 48 48 H 1.09005 * 109.88062 * 117.39776 * 29 28 26 49 49 H 1.09003 * 109.87764 * 238.54358 * 29 28 26 50 50 H 1.09006 * 110.61649 * 201.43393 * 31 30 29 51 51 H 1.09007 * 110.61885 * 78.44315 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4252 1.4622 -0.1260 5 1 3.8778 0.4735 -0.0511 6 6 3.9575 2.3432 0.9747 7 8 3.2407 3.1795 1.4823 8 7 5.2302 2.2017 1.3951 9 6 5.8971 3.0562 2.3829 10 6 7.3276 2.5294 2.5772 11 1 8.0785 3.1641 2.1066 12 6 7.5719 2.2744 4.0875 13 7 7.0149 0.9521 4.3955 14 6 6.7080 0.4945 5.6492 15 1 6.3000 -0.4973 5.7772 16 6 6.9212 1.3053 6.7555 17 7 7.4180 2.5142 6.5995 18 14 6.5020 0.6813 8.4656 19 1 7.2973 -0.5386 8.7562 20 1 6.8201 1.7306 9.4672 21 1 5.0546 0.3561 8.5328 22 6 6.8378 0.1977 3.1504 23 6 7.2899 1.0925 1.9857 24 1 8.2443 0.7817 1.5606 25 6 6.1656 1.1683 0.9362 26 6 3.7683 2.0787 -1.4837 27 1 3.4892 3.1319 -1.5122 28 6 3.0890 1.2957 -2.6335 29 6 4.1672 1.2272 -3.7323 30 8 5.3132 1.9501 -3.2523 31 6 5.2723 1.8951 -1.8101 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 5.9286 4.0836 2.0203 38 1 5.3577 3.0158 3.3292 39 1 7.0725 3.0378 4.6840 40 1 8.6429 2.2845 4.2899 41 1 7.5674 3.0807 7.3726 42 1 5.7879 -0.0671 3.0258 43 1 7.4455 -0.7067 3.1778 44 1 5.6554 0.2076 0.8661 45 1 6.5783 1.4429 -0.0345 46 1 2.8164 0.2933 -2.3035 47 1 2.2095 1.8307 -2.9918 48 1 4.4372 0.1884 -3.9225 49 1 3.7943 1.6886 -4.6467 50 1 5.8605 2.7050 -1.3783 51 1 5.6276 0.9286 -1.4526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279380445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:30 Heat of formation + Delta-G solvation = -85.904586 kcal Electronic energy + Delta-G solvation = -31791.348538 eV Core-core repulsion = 27691.972655 eV Total energy + Delta-G solvation = -4099.375882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82950 -39.52568 -38.48063 -37.40247 -35.00452 -33.38197 -32.21821 -31.31793 -30.53730 -29.72680 -29.60197 -26.94038 -25.57351 -25.15495 -23.12151 -23.06783 -22.77738 -21.14742 -20.14315 -19.43749 -19.25607 -17.81349 -17.07249 -16.93360 -16.53314 -16.29305 -15.83309 -15.40453 -15.23979 -15.04652 -14.72499 -14.22663 -13.96706 -13.78315 -13.67246 -13.18377 -13.09037 -12.83463 -12.71858 -12.44012 -12.36116 -12.09448 -11.99768 -11.85667 -11.68114 -11.62427 -11.49998 -11.34288 -11.28152 -11.02256 -10.98211 -10.81506 -10.45546 -10.17744 -10.16309 -10.03152 -9.95261 -9.86103 -9.64082 -9.29604 -8.65910 -8.35403 -6.86871 -5.71416 -3.10134 2.64929 2.83059 3.39392 3.43888 3.44999 3.54455 3.63934 4.16826 4.42854 4.45326 4.50007 4.55881 4.64097 4.69710 4.77703 4.84325 4.90143 4.98572 5.04997 5.11740 5.16516 5.20959 5.38444 5.40850 5.42775 5.44561 5.48432 5.50999 5.55740 5.66215 5.68221 5.69945 5.74598 5.80176 5.88991 5.92534 6.08580 6.26414 6.36245 6.49474 6.51771 6.60351 6.70119 6.77516 6.89508 7.41538 7.58391 7.69754 7.79375 8.29370 8.32396 9.19287 9.79669 10.42243 11.35155 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.003356 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.153584 B = 8341.175716 C = 9398.746559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.352 6.352 4 C 0.091 3.909 5 H 0.084 0.916 6 C 0.518 3.482 7 O -0.519 6.519 8 N -0.604 5.604 9 C 0.121 3.879 10 C -0.124 4.124 11 H 0.090 0.910 12 C 0.172 3.828 13 N -0.599 5.599 14 C -0.227 4.227 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.145 3.855 23 C -0.109 4.109 24 H 0.098 0.902 25 C 0.097 3.903 26 C -0.127 4.127 27 H 0.099 0.901 28 C -0.144 4.144 29 C 0.045 3.955 30 O -0.374 6.374 31 C 0.048 3.952 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.019 0.981 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 -4.961 -20.661 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.270 6.270 4 C 0.029 3.971 5 H 0.102 0.898 6 C 0.304 3.696 7 O -0.394 6.394 8 N -0.340 5.340 9 C 0.000 4.000 10 C -0.144 4.144 11 H 0.109 0.891 12 C 0.047 3.953 13 N -0.325 5.325 14 C -0.356 4.356 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.212 1.212 22 C 0.019 3.981 23 C -0.128 4.128 24 H 0.116 0.884 25 C -0.026 4.026 26 C -0.146 4.146 27 H 0.118 0.882 28 C -0.182 4.182 29 C -0.032 4.032 30 O -0.292 6.292 31 C -0.028 4.028 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.103 0.897 50 H 0.118 0.882 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.580 -4.158 -20.290 21.732 hybrid contribution -0.170 -0.798 1.055 1.333 sum -6.749 -4.956 -19.236 20.979 Atomic orbital electron populations 1.21723 0.93278 1.02261 1.03425 1.22747 0.96161 0.83562 1.00173 1.88054 1.18436 1.26375 1.94122 1.21809 0.83867 0.98764 0.92614 0.89802 1.20176 0.80517 0.85113 0.83794 1.90718 1.55900 1.35905 1.56880 1.48263 1.11109 1.31972 1.42637 1.21912 0.92820 0.92837 0.92472 1.23431 0.94951 0.94671 1.01350 0.89127 1.21650 0.97154 0.89571 0.86936 1.44160 1.74877 1.12474 1.01005 1.18984 1.35944 0.98885 0.81749 0.90565 1.24781 1.01094 0.96436 0.98001 1.69834 1.50085 1.08308 1.28714 0.86162 0.78130 0.77525 0.83728 1.21189 1.21506 1.21153 1.21129 0.97163 0.93705 0.86116 1.22852 0.97252 0.97331 0.95372 0.88409 1.22368 0.91114 0.91208 0.97939 1.23031 0.96216 1.02347 0.93031 0.88232 1.22941 0.99322 1.01174 0.94744 1.23198 0.85683 0.96750 0.97525 1.88909 1.45403 1.75397 1.19541 1.23954 0.94979 1.02353 0.81560 0.90993 0.91482 0.91835 0.93148 0.92969 0.92295 0.90088 0.88461 0.96303 0.93570 0.96180 0.95990 0.91311 0.91143 0.90565 0.89768 0.92222 0.89718 0.88156 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.50 6.17 37.16 0.23 0.73 16 3 O -0.35 -4.78 9.19 -53.67 -0.49 -5.27 16 4 C 0.09 1.15 1.83 -27.88 -0.05 1.10 16 5 H 0.08 0.88 6.00 -51.93 -0.31 0.57 16 6 C 0.52 8.68 6.86 -10.98 -0.08 8.61 16 7 O -0.52 -11.08 17.00 -12.88 -0.22 -11.29 16 8 N -0.60 -9.55 3.29 -172.34 -0.57 -10.11 16 9 C 0.12 2.18 6.27 -3.61 -0.02 2.16 16 10 C -0.12 -2.14 4.18 -87.86 -0.37 -2.50 16 11 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 12 C 0.17 3.97 4.85 -2.79 -0.01 3.95 16 13 N -0.60 -14.79 3.38 -171.18 -0.58 -15.37 16 14 C -0.23 -6.25 10.25 -15.06 -0.15 -6.40 16 15 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 16 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 17 N -0.92 -26.48 10.16 55.49 0.56 -25.91 16 18 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 C 0.15 2.84 6.66 -3.61 -0.02 2.81 16 23 C -0.11 -1.65 4.04 -88.46 -0.36 -2.01 16 24 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 25 C 0.10 1.22 4.40 -3.39 -0.01 1.21 16 26 C -0.13 -1.35 2.85 -88.61 -0.25 -1.61 16 27 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 28 C -0.14 -1.18 6.13 -25.20 -0.15 -1.34 16 29 C 0.05 0.36 7.70 37.73 0.29 0.65 16 30 O -0.37 -4.06 11.52 -35.23 -0.41 -4.46 16 31 C 0.05 0.48 5.13 38.21 0.20 0.67 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.39 6.29 -51.93 -0.33 0.06 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.80 7.45 -51.93 -0.39 1.41 16 39 H 0.10 2.56 5.83 -51.93 -0.30 2.26 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.78 6.69 -51.93 -0.35 0.43 16 45 H 0.07 0.71 4.93 -51.93 -0.26 0.45 16 46 H 0.08 0.55 5.81 -51.93 -0.30 0.25 16 47 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.10 1.04 7.53 -51.93 -0.39 0.65 16 51 H 0.07 0.59 6.16 -51.93 -0.32 0.27 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -33.57 384.63 -9.79 -43.35 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.37 Total: -0.57 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.48 Total: 6.81 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.58 Total: -51.39 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.12 Total: -21.03 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.57 -9.79 -43.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279380445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.552 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds