Wall clock time and date at job start Tue Mar 31 2020 22:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 O 1.42901 * 109.46647 * 2 1 4 4 C 1.42903 * 113.99492 * 185.53749 * 3 2 1 5 5 H 1.08997 * 109.47351 * 351.74656 * 4 3 2 6 6 C 1.50700 * 109.46892 * 231.74006 * 4 3 2 7 7 O 1.21277 * 120.00270 * 334.17738 * 6 4 3 8 8 N 1.34779 * 119.99889 * 154.17722 * 6 4 3 9 9 C 1.46652 * 125.33440 * 175.24124 * 8 6 4 10 10 C 1.53677 * 107.98330 * 179.26025 * 9 8 6 11 11 H 1.08997 * 112.77629 * 106.03156 * 10 9 8 12 12 C 1.55107 * 109.02749 * 233.79981 * 10 9 8 13 13 N 1.46753 * 107.02345 * 82.79490 * 12 10 9 14 14 C 1.36943 * 125.33286 * 198.02358 * 13 12 10 15 15 H 1.08001 * 119.99860 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99923 * 359.97438 * 14 13 12 17 17 N 1.31621 * 119.99999 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00050 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46951 * 59.99950 * 18 16 14 20 20 H 1.48505 * 109.46909 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47144 * 300.00261 * 18 16 14 22 22 C 1.46655 * 109.33536 * 17.99901 * 13 12 10 23 23 C 1.53673 * 107.96832 * 359.29310 * 22 13 12 24 24 H 1.09006 * 112.77938 * 106.74055 * 23 22 13 25 25 C 1.46757 * 125.33110 * 355.22561 * 8 6 4 26 26 C 1.53005 * 109.46762 * 111.74313 * 4 3 2 27 27 H 1.08998 * 110.80305 * 70.61170 * 26 4 3 28 28 C 1.54809 * 110.90839 * 306.97821 * 26 4 3 29 29 C 1.54098 * 104.18570 * 220.92501 * 28 26 4 30 30 O 1.43746 * 107.29734 * 357.96771 * 29 28 26 31 31 C 1.44382 * 106.96990 * 26.51628 * 30 29 28 32 32 H 1.09002 * 109.46678 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46747 * 299.99642 * 1 2 3 34 34 H 1.08997 * 109.46821 * 60.00283 * 1 2 3 35 35 H 1.08998 * 109.46749 * 239.99821 * 2 1 3 36 36 H 1.08997 * 109.46821 * 119.99717 * 2 1 3 37 37 H 1.08997 * 109.76996 * 298.89745 * 9 8 6 38 38 H 1.08997 * 109.76722 * 59.62788 * 9 8 6 39 39 H 1.08996 * 110.21724 * 323.17120 * 12 10 9 40 40 H 1.09005 * 109.51015 * 202.02322 * 12 10 9 41 41 H 0.97002 * 120.00217 * 180.02562 * 17 16 14 42 42 H 1.08991 * 109.77487 * 239.65794 * 22 13 12 43 43 H 1.09000 * 109.76681 * 118.91481 * 22 13 12 44 44 H 1.09002 * 110.01859 * 317.76824 * 25 8 6 45 45 H 1.08992 * 110.02313 * 79.12207 * 25 8 6 46 46 H 1.08997 * 110.48636 * 339.60092 * 28 26 4 47 47 H 1.09003 * 110.48728 * 102.11338 * 28 26 4 48 48 H 1.09005 * 109.88062 * 117.39776 * 29 28 26 49 49 H 1.09003 * 109.87764 * 238.54358 * 29 28 26 50 50 H 1.09006 * 110.61649 * 201.43393 * 31 30 29 51 51 H 1.09007 * 110.61885 * 78.44315 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4252 1.4622 -0.1260 5 1 3.8778 0.4735 -0.0511 6 6 3.9575 2.3432 0.9747 7 8 3.2407 3.1795 1.4823 8 7 5.2302 2.2017 1.3951 9 6 5.8971 3.0562 2.3829 10 6 7.3276 2.5294 2.5772 11 1 8.0785 3.1641 2.1066 12 6 7.5719 2.2744 4.0875 13 7 7.0149 0.9521 4.3955 14 6 6.7080 0.4945 5.6492 15 1 6.3000 -0.4973 5.7772 16 6 6.9212 1.3053 6.7555 17 7 7.4180 2.5142 6.5995 18 14 6.5020 0.6813 8.4656 19 1 7.2973 -0.5386 8.7562 20 1 6.8201 1.7306 9.4672 21 1 5.0546 0.3561 8.5328 22 6 6.8378 0.1977 3.1504 23 6 7.2899 1.0925 1.9857 24 1 8.2443 0.7817 1.5606 25 6 6.1656 1.1683 0.9362 26 6 3.7683 2.0787 -1.4837 27 1 3.4892 3.1319 -1.5122 28 6 3.0890 1.2957 -2.6335 29 6 4.1672 1.2272 -3.7323 30 8 5.3132 1.9501 -3.2523 31 6 5.2723 1.8951 -1.8101 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 5.9286 4.0836 2.0203 38 1 5.3577 3.0158 3.3292 39 1 7.0725 3.0378 4.6840 40 1 8.6429 2.2845 4.2899 41 1 7.5674 3.0807 7.3726 42 1 5.7879 -0.0671 3.0258 43 1 7.4455 -0.7067 3.1778 44 1 5.6554 0.2076 0.8661 45 1 6.5783 1.4429 -0.0345 46 1 2.8164 0.2933 -2.3035 47 1 2.2095 1.8307 -2.9918 48 1 4.4372 0.1884 -3.9225 49 1 3.7943 1.6886 -4.6467 50 1 5.8605 2.7050 -1.3783 51 1 5.6276 0.9286 -1.4526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279380445.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:29 Heat of formation + Delta-G solvation = -108.689262 kcal Electronic energy + Delta-G solvation = -31792.336555 eV Core-core repulsion = 27691.972655 eV Total energy + Delta-G solvation = -4100.363900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96612 -40.59228 -39.59434 -38.53886 -36.64889 -34.41169 -33.85730 -32.08728 -31.87220 -31.32715 -30.47861 -28.17469 -27.11012 -26.69034 -24.40460 -23.80560 -23.71786 -21.94141 -21.85105 -20.87250 -20.42740 -19.06557 -18.59945 -17.98687 -17.54731 -17.27338 -17.01312 -16.76203 -16.40940 -16.09266 -15.87362 -15.60353 -15.46280 -14.87803 -14.60000 -14.48236 -14.37101 -14.12885 -13.74646 -13.55930 -13.52194 -13.36082 -13.16649 -13.13313 -12.99178 -12.83901 -12.71507 -12.61144 -12.38365 -12.23014 -12.08431 -12.05513 -11.88974 -11.78756 -11.66727 -11.51728 -11.36296 -11.15617 -10.73625 -10.63664 -10.40437 -9.68997 -8.87036 -7.82219 -5.22089 1.39998 1.42938 1.46079 1.52122 1.69406 2.47221 2.63558 2.92700 3.22697 3.30591 3.40219 3.59121 3.60527 3.70173 3.80114 3.85255 3.90016 3.94730 4.10007 4.14464 4.21159 4.26054 4.28470 4.32222 4.42438 4.44507 4.48009 4.55846 4.70414 4.76574 4.78403 4.83618 4.85185 4.88265 4.90105 4.99229 5.03784 5.04958 5.12408 5.13792 5.22142 5.25494 5.35019 5.45983 5.59028 5.81825 5.87640 6.02382 6.27959 6.45886 7.03775 7.11053 7.80333 8.40164 9.21867 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.003356 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.153584 B = 8341.175716 C = 9398.746559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.041 3.959 3 O -0.381 6.381 4 C 0.102 3.898 5 H 0.114 0.886 6 C 0.509 3.491 7 O -0.580 6.580 8 N -0.603 5.603 9 C 0.127 3.873 10 C -0.108 4.108 11 H 0.126 0.874 12 C 0.176 3.824 13 N -0.622 5.622 14 C -0.241 4.241 15 H 0.079 0.921 16 C -0.065 4.065 17 N -0.947 5.947 18 Si 0.975 3.025 19 H -0.274 1.274 20 H -0.294 1.294 21 H -0.283 1.283 22 C 0.137 3.863 23 C -0.094 4.094 24 H 0.138 0.862 25 C 0.097 3.903 26 C -0.126 4.126 27 H 0.073 0.927 28 C -0.137 4.137 29 C 0.043 3.957 30 O -0.394 6.394 31 C 0.049 3.951 32 H 0.096 0.904 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.054 0.946 40 H -0.006 1.006 41 H 0.246 0.754 42 H 0.014 0.986 43 H 0.032 0.968 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.094 0.906 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -7.651 -23.896 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 O -0.299 6.299 4 C 0.041 3.959 5 H 0.131 0.869 6 C 0.297 3.703 7 O -0.459 6.459 8 N -0.336 5.336 9 C 0.004 3.996 10 C -0.128 4.128 11 H 0.144 0.856 12 C 0.051 3.949 13 N -0.348 5.348 14 C -0.370 4.370 15 H 0.096 0.904 16 C -0.258 4.258 17 N -0.596 5.596 18 Si 0.804 3.196 19 H -0.199 1.199 20 H -0.220 1.220 21 H -0.209 1.209 22 C 0.012 3.988 23 C -0.113 4.113 24 H 0.155 0.845 25 C -0.024 4.024 26 C -0.145 4.145 27 H 0.092 0.908 28 C -0.175 4.175 29 C -0.034 4.034 30 O -0.313 6.313 31 C -0.027 4.027 32 H 0.115 0.885 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.012 0.988 41 H 0.056 0.944 42 H 0.032 0.968 43 H 0.050 0.950 44 H 0.112 0.888 45 H 0.130 0.870 46 H 0.112 0.888 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.111 0.889 50 H 0.112 0.888 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.106 -6.904 -23.573 25.311 hybrid contribution -0.366 0.023 2.081 2.113 sum -6.471 -6.881 -21.493 23.477 Atomic orbital electron populations 1.21761 0.92660 1.03611 1.02573 1.23013 0.96810 0.82199 1.01406 1.88046 1.18948 1.28732 1.94203 1.21810 0.83719 0.98959 0.91455 0.86878 1.21167 0.80121 0.84859 0.84107 1.90684 1.57474 1.38619 1.59112 1.48347 1.11475 1.32167 1.41653 1.21624 0.92935 0.94135 0.90885 1.23272 0.95024 0.97134 0.97361 0.85576 1.21363 0.94827 0.88149 0.90582 1.44456 1.74714 1.13756 1.01907 1.19359 1.35226 0.98984 0.83466 0.90364 1.25591 1.01816 0.96820 1.01535 1.70100 1.51347 1.09255 1.28901 0.85201 0.77870 0.77099 0.79476 1.19948 1.21991 1.20925 1.21388 0.97063 0.94594 0.85738 1.22916 0.99955 0.94150 0.94315 0.84461 1.22655 0.89789 0.91483 0.98492 1.22958 0.97628 1.01185 0.92753 0.90818 1.22928 0.99251 1.01582 0.93696 1.23373 0.84734 0.97762 0.97492 1.88893 1.46478 1.76158 1.19808 1.23988 0.93959 1.03311 0.81478 0.88509 0.93725 0.91319 0.89823 0.93626 0.91625 0.95633 0.92837 0.98759 0.94425 0.96800 0.94953 0.88828 0.87020 0.88839 0.89807 0.90152 0.88885 0.88815 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.99 0.74 -1.60 16 2 C 0.04 0.73 6.17 71.99 0.44 1.18 16 3 O -0.38 -9.90 9.19 -131.35 -1.21 -11.11 16 4 C 0.10 2.35 1.83 29.85 0.05 2.40 16 5 H 0.11 1.89 6.00 -2.39 -0.01 1.87 16 6 C 0.51 16.96 6.86 87.66 0.60 17.57 16 7 O -0.58 -25.91 17.00 14.61 0.25 -25.66 16 8 N -0.60 -18.32 3.29 -817.55 -2.69 -21.01 16 9 C 0.13 4.66 6.27 86.58 0.54 5.21 16 10 C -0.11 -3.61 4.18 -9.00 -0.04 -3.65 16 11 H 0.13 3.38 8.14 -2.39 -0.02 3.36 16 12 C 0.18 8.41 4.85 87.05 0.42 8.83 16 13 N -0.62 -31.31 3.38 -695.50 -2.35 -33.66 16 14 C -0.24 -13.59 10.25 84.03 0.86 -12.73 16 15 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 16 C -0.06 -3.72 5.48 84.86 0.47 -3.25 16 17 N -0.95 -57.10 10.16 21.65 0.22 -56.88 16 18 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 22 C 0.14 5.15 6.66 86.58 0.58 5.73 16 23 C -0.09 -2.54 4.04 -9.39 -0.04 -2.58 16 24 H 0.14 2.76 8.14 -2.38 -0.02 2.74 16 25 C 0.10 2.05 4.40 86.66 0.38 2.43 16 26 C -0.13 -2.39 2.85 -9.49 -0.03 -2.41 16 27 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 28 C -0.14 -1.78 6.13 31.58 0.19 -1.58 16 29 C 0.04 0.52 7.70 72.35 0.56 1.07 16 30 O -0.39 -7.17 11.52 -148.98 -1.72 -8.89 16 31 C 0.05 0.79 5.13 72.66 0.37 1.16 16 32 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 0.91 6.29 -2.39 -0.02 0.90 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.03 1.21 7.45 -2.39 -0.02 1.19 16 39 H 0.05 3.02 5.83 -2.39 -0.01 3.01 16 40 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 41 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.01 0.54 7.46 -2.39 -0.02 0.53 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 1.60 6.69 -2.39 -0.02 1.59 16 45 H 0.11 1.57 4.93 -2.39 -0.01 1.56 16 46 H 0.09 0.89 5.81 -2.39 -0.01 0.88 16 47 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.09 1.62 7.53 -2.38 -0.02 1.61 16 51 H 0.09 1.04 6.16 -2.38 -0.01 1.03 16 Total: -1.00 -80.66 384.63 1.56 -79.09 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.92 Total: 11.78 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 6.11 Total: 17.76 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.82 Total: -111.55 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -2.68 Total: -45.66 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -80.66 1.56 -79.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279380445.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.597 kcal (2) G-P(sol) polarization free energy of solvation -80.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds