Wall clock time and date at job start Tue Mar 31 2020 21:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47318 * 2 1 4 4 C 1.42904 * 114.00376 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.87290 * 18.68260 * 4 3 2 6 6 C 1.53925 * 113.64988 * 247.25935 * 4 3 2 7 7 C 1.53918 * 87.21839 * 270.36451 * 6 4 3 8 8 H 1.09005 * 113.73044 * 89.64317 * 7 6 4 9 9 N 1.46502 * 113.65304 * 220.64390 * 7 6 4 10 10 C 1.34774 * 120.00384 * 184.66221 * 9 7 6 11 11 O 1.21348 * 119.99755 * 0.02562 * 10 9 7 12 12 C 1.49444 * 119.99759 * 180.02562 * 10 9 7 13 13 O 1.21348 * 120.00486 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99759 * 180.02562 * 12 10 9 15 15 C 1.46507 * 120.00225 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47399 * 180.02562 * 15 14 12 17 17 C 1.50689 * 109.47474 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99765 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00564 * 179.72603 * 17 16 15 20 20 N 1.31519 * 119.99803 * 0.27113 * 19 17 16 21 21 Si 1.86796 * 120.00415 * 180.27579 * 19 17 16 22 22 H 1.48505 * 109.47307 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47443 * 119.99735 * 21 19 17 24 24 H 1.48497 * 109.47211 * 239.99690 * 21 19 17 25 25 C 1.53010 * 86.85906 * 335.14099 * 7 6 4 26 26 C 1.53564 * 115.12706 * 268.16791 * 25 7 6 27 27 C 1.55065 * 103.98650 * 206.86747 * 26 25 7 28 28 C 1.54956 * 102.85753 * 37.29493 * 27 26 25 29 29 C 1.53171 * 115.37929 * 142.15779 * 25 7 6 30 30 H 1.08998 * 109.46976 * 300.00436 * 1 2 3 31 31 H 1.09002 * 109.47071 * 60.00087 * 1 2 3 32 32 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46976 * 239.99564 * 2 1 3 34 34 H 1.09002 * 109.46587 * 119.99701 * 2 1 3 35 35 H 1.08999 * 113.58831 * 155.78258 * 6 4 3 36 36 H 1.08996 * 113.58796 * 24.94867 * 6 4 3 37 37 H 0.97001 * 119.99140 * 4.66768 * 9 7 6 38 38 H 0.97001 * 120.00476 * 0.02562 * 14 12 10 39 39 H 1.08994 * 109.46887 * 59.99863 * 15 14 12 40 40 H 1.09001 * 109.46791 * 299.99916 * 15 14 12 41 41 H 1.09002 * 109.46956 * 59.99476 * 16 15 14 42 42 H 1.09004 * 109.46826 * 300.00452 * 16 15 14 43 43 H 0.96999 * 119.99919 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.52842 * 325.48890 * 26 25 7 45 45 H 1.08994 * 110.52912 * 88.24204 * 26 25 7 46 46 H 1.08995 * 110.73403 * 278.95725 * 27 26 25 47 47 H 1.08997 * 110.73479 * 155.63681 * 27 26 25 48 48 H 1.08999 * 110.47993 * 203.76166 * 28 27 26 49 49 H 1.09003 * 110.58906 * 81.19525 * 28 27 26 50 50 H 1.08993 * 110.09235 * 248.86037 * 29 25 7 51 51 H 1.09000 * 110.08903 * 10.39009 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.9283 0.5452 -0.3226 6 6 4.0040 2.0520 1.2996 7 6 3.8549 3.4376 0.6461 8 1 2.8873 3.9060 0.8268 9 7 4.9810 4.3365 0.9108 10 6 4.9406 5.6126 0.4792 11 8 3.9711 6.0172 -0.1283 12 6 6.0896 6.5294 0.7488 13 8 7.0588 6.1250 1.3567 14 7 6.0489 7.8056 0.3176 15 6 7.1751 8.7046 0.5823 16 6 6.8764 10.0840 -0.0084 17 6 8.0344 11.0088 0.2644 18 1 8.8975 10.6486 0.8048 19 6 7.9950 12.3130 -0.1810 20 7 6.9444 12.7515 -0.8395 21 14 9.4339 13.4571 0.1505 22 1 10.4839 12.7264 0.9047 23 1 9.9929 13.9360 -1.1392 24 1 8.9686 14.6188 0.9500 25 6 3.9468 2.7188 -0.7015 26 6 5.3628 2.6056 -1.2849 27 6 5.1316 2.5207 -2.8159 28 6 3.9426 3.4889 -3.0393 29 6 3.0401 3.2732 -1.8045 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.0392 1.7681 1.4890 36 1 3.3592 1.9068 2.1663 37 1 5.7558 4.0131 1.3967 38 1 5.2737 8.1293 -0.1674 39 1 8.0779 8.3005 0.1244 40 1 7.3227 8.7948 1.6585 41 1 5.9736 10.4877 0.4499 42 1 6.7284 9.9940 -1.0846 43 1 6.9168 13.6689 -1.1532 44 1 5.9507 3.4890 -1.0356 45 1 5.8547 1.7032 -0.9221 46 1 4.8635 1.5060 -3.1099 47 1 6.0135 2.8608 -3.3587 48 1 3.4071 3.2308 -3.9529 49 1 4.2913 4.5208 -3.0813 50 1 2.2523 2.5568 -2.0369 51 1 2.6030 4.2206 -1.4889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323070990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:56 Heat of formation + Delta-G solvation = -114.477681 kcal Electronic energy + Delta-G solvation = -29990.065759 eV Core-core repulsion = 25889.450854 eV Total energy + Delta-G solvation = -4100.614905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.38406 -39.93530 -38.12049 -37.38783 -35.56272 -34.99749 -33.24341 -32.76346 -31.10276 -29.79805 -28.91752 -27.15669 -26.25115 -24.77782 -23.31707 -22.95359 -22.09298 -21.02876 -20.71100 -20.09407 -19.03994 -18.06630 -17.24132 -16.67475 -16.30578 -16.12619 -16.01988 -15.82401 -15.42847 -15.06054 -14.71452 -14.45535 -14.24329 -13.87350 -13.69740 -13.53571 -13.40202 -13.17741 -12.90506 -12.84275 -12.53486 -12.32476 -12.24871 -11.73533 -11.71160 -11.41167 -11.22061 -11.21523 -11.12773 -11.09580 -11.07127 -10.82514 -10.64625 -10.62384 -10.50656 -10.39727 -9.77903 -9.74975 -9.41027 -9.16185 -9.14325 -8.67826 -8.41342 -6.09744 -4.13302 1.66782 2.59828 3.10771 3.28213 3.35857 3.40397 3.46548 3.91901 4.09383 4.13578 4.30639 4.40608 4.45031 4.63387 4.69167 4.72784 4.80407 4.89047 4.95749 4.98367 5.03675 5.26457 5.27172 5.30299 5.37137 5.40889 5.47651 5.51426 5.57817 5.64833 5.72165 5.75710 5.79339 5.93333 6.01509 6.03822 6.19339 6.21987 6.24920 6.29405 6.33342 6.61454 6.71065 6.88088 7.12794 7.48599 7.58762 7.71522 7.87927 7.98684 8.22975 8.36627 8.92581 9.51612 11.01765 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002029 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.643054 B =13799.199783 C =14000.648106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.360 6.360 4 C 0.080 3.920 5 H 0.080 0.920 6 C -0.162 4.162 7 C 0.142 3.858 8 H 0.113 0.887 9 N -0.696 5.696 10 C 0.508 3.492 11 O -0.513 6.513 12 C 0.496 3.504 13 O -0.535 6.535 14 N -0.686 5.686 15 C 0.119 3.881 16 C 0.011 3.989 17 C -0.522 4.522 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.090 4.090 26 C -0.100 4.100 27 C -0.123 4.123 28 C -0.125 4.125 29 C -0.103 4.103 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.411 0.589 38 H 0.410 0.590 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.262 0.738 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.281 -29.087 0.133 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.021 3.979 5 H 0.098 0.902 6 C -0.200 4.200 7 C 0.037 3.963 8 H 0.131 0.869 9 N -0.349 5.349 10 C 0.289 3.711 11 O -0.388 6.388 12 C 0.275 3.725 13 O -0.414 6.414 14 N -0.337 5.337 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.561 4.561 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.092 4.092 26 C -0.137 4.137 27 C -0.160 4.160 28 C -0.163 4.163 29 C -0.141 4.141 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.248 0.752 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.088 0.912 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.487 -28.718 0.045 30.573 hybrid contribution 0.868 0.502 0.185 1.020 sum -9.619 -28.216 0.231 29.812 Atomic orbital electron populations 1.21747 0.93625 1.02235 1.03328 1.22539 0.95653 0.83751 1.00025 1.87913 1.19322 1.26265 1.94357 1.22818 0.81813 0.97531 0.95744 0.90206 1.23842 1.02370 0.95141 0.98646 1.22548 0.90708 0.87995 0.95052 0.86876 1.45739 1.21543 1.10286 1.57324 1.20427 0.87756 0.83082 0.79794 1.90749 1.33660 1.75612 1.38748 1.20056 0.87268 0.83871 0.81279 1.90722 1.33986 1.75910 1.40750 1.46235 1.22903 1.09845 1.54720 1.21923 0.86678 0.90874 1.00801 1.19359 0.98189 0.88420 0.96724 1.21050 1.02997 0.95561 1.36501 0.92122 1.25008 0.96175 0.98228 0.94922 1.69972 1.28754 1.16724 1.37592 0.86443 0.82371 0.80637 0.78022 1.19590 1.20929 1.20930 1.22704 0.96635 0.94546 0.95295 1.22075 0.94093 1.02203 0.95369 1.22508 0.98567 0.99449 0.95513 1.22397 0.96262 0.99761 0.97854 1.21882 0.97292 1.01527 0.93366 0.91766 0.91735 0.91142 0.93336 0.93369 0.88485 0.89750 0.75241 0.75400 0.91916 0.91916 0.95664 0.95665 0.92834 0.90459 0.91582 0.91809 0.91539 0.92009 0.91471 0.91208 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.06 0.35 6.50 37.16 0.24 0.59 16 3 O -0.36 -3.12 9.10 -35.23 -0.32 -3.45 16 4 C 0.08 0.62 3.76 -26.24 -0.10 0.52 16 5 H 0.08 0.51 7.76 -51.93 -0.40 0.10 16 6 C -0.16 -1.18 7.45 -25.78 -0.19 -1.37 16 7 C 0.14 1.43 3.32 -67.45 -0.22 1.21 16 8 H 0.11 1.34 7.96 -51.93 -0.41 0.93 16 9 N -0.70 -7.97 3.97 -53.77 -0.21 -8.19 16 10 C 0.51 7.57 7.74 -11.59 -0.09 7.48 16 11 O -0.51 -8.57 16.03 5.50 0.09 -8.48 16 12 C 0.50 8.54 7.89 -11.59 -0.09 8.45 16 13 O -0.54 -10.09 16.48 5.50 0.09 -10.00 16 14 N -0.69 -12.60 5.55 -60.73 -0.34 -12.93 16 15 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 16 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 17 C -0.52 -14.41 9.11 -34.45 -0.31 -14.72 16 18 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.09 -0.85 1.08 -154.12 -0.17 -1.01 16 26 C -0.10 -0.91 5.81 -25.35 -0.15 -1.06 16 27 C -0.12 -1.10 6.91 -24.61 -0.17 -1.27 16 28 C -0.13 -1.29 6.84 -24.93 -0.17 -1.46 16 29 C -0.10 -1.10 6.06 -25.88 -0.16 -1.26 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.41 4.21 8.09 -40.82 -0.33 3.88 16 38 H 0.41 7.22 7.94 -40.82 -0.32 6.90 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.08 0.84 6.85 -51.93 -0.36 0.49 16 45 H 0.07 0.49 7.88 -51.93 -0.41 0.08 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.72 7.19 -51.93 -0.37 0.35 16 51 H 0.08 0.98 7.55 -51.93 -0.39 0.59 16 LS Contribution 413.53 15.07 6.23 6.23 Total: -1.00 -31.24 413.53 -9.09 -40.33 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -8.88 Total: 5.84 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.46 Total: -0.22 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.19 Total: -46.56 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.14 Total: -21.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.24 -9.09 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.151 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds