Wall clock time and date at job start Tue Mar 31 2020 21:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47318 * 2 1 4 4 C 1.42904 * 114.00376 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.87290 * 18.68260 * 4 3 2 6 6 C 1.53925 * 113.64988 * 247.25935 * 4 3 2 7 7 C 1.53918 * 87.21839 * 270.36451 * 6 4 3 8 8 H 1.09005 * 113.73044 * 89.64317 * 7 6 4 9 9 N 1.46502 * 113.65304 * 220.64390 * 7 6 4 10 10 C 1.34774 * 120.00384 * 184.66221 * 9 7 6 11 11 O 1.21348 * 119.99755 * 0.02562 * 10 9 7 12 12 C 1.49444 * 119.99759 * 180.02562 * 10 9 7 13 13 O 1.21348 * 120.00486 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99759 * 180.02562 * 12 10 9 15 15 C 1.46507 * 120.00225 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47399 * 180.02562 * 15 14 12 17 17 C 1.50689 * 109.47474 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99765 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00564 * 179.72603 * 17 16 15 20 20 N 1.31519 * 119.99803 * 0.27113 * 19 17 16 21 21 Si 1.86796 * 120.00415 * 180.27579 * 19 17 16 22 22 H 1.48505 * 109.47307 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47443 * 119.99735 * 21 19 17 24 24 H 1.48497 * 109.47211 * 239.99690 * 21 19 17 25 25 C 1.53010 * 86.85906 * 335.14099 * 7 6 4 26 26 C 1.53564 * 115.12706 * 268.16791 * 25 7 6 27 27 C 1.55065 * 103.98650 * 206.86747 * 26 25 7 28 28 C 1.54956 * 102.85753 * 37.29493 * 27 26 25 29 29 C 1.53171 * 115.37929 * 142.15779 * 25 7 6 30 30 H 1.08998 * 109.46976 * 300.00436 * 1 2 3 31 31 H 1.09002 * 109.47071 * 60.00087 * 1 2 3 32 32 H 1.08999 * 109.47399 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46976 * 239.99564 * 2 1 3 34 34 H 1.09002 * 109.46587 * 119.99701 * 2 1 3 35 35 H 1.08999 * 113.58831 * 155.78258 * 6 4 3 36 36 H 1.08996 * 113.58796 * 24.94867 * 6 4 3 37 37 H 0.97001 * 119.99140 * 4.66768 * 9 7 6 38 38 H 0.97001 * 120.00476 * 0.02562 * 14 12 10 39 39 H 1.08994 * 109.46887 * 59.99863 * 15 14 12 40 40 H 1.09001 * 109.46791 * 299.99916 * 15 14 12 41 41 H 1.09002 * 109.46956 * 59.99476 * 16 15 14 42 42 H 1.09004 * 109.46826 * 300.00452 * 16 15 14 43 43 H 0.96999 * 119.99919 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.52842 * 325.48890 * 26 25 7 45 45 H 1.08994 * 110.52912 * 88.24204 * 26 25 7 46 46 H 1.08995 * 110.73403 * 278.95725 * 27 26 25 47 47 H 1.08997 * 110.73479 * 155.63681 * 27 26 25 48 48 H 1.08999 * 110.47993 * 203.76166 * 28 27 26 49 49 H 1.09003 * 110.58906 * 81.19525 * 28 27 26 50 50 H 1.08993 * 110.09235 * 248.86037 * 29 25 7 51 51 H 1.09000 * 110.08903 * 10.39009 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.9283 0.5452 -0.3226 6 6 4.0040 2.0520 1.2996 7 6 3.8549 3.4376 0.6461 8 1 2.8873 3.9060 0.8268 9 7 4.9810 4.3365 0.9108 10 6 4.9406 5.6126 0.4792 11 8 3.9711 6.0172 -0.1283 12 6 6.0896 6.5294 0.7488 13 8 7.0588 6.1250 1.3567 14 7 6.0489 7.8056 0.3176 15 6 7.1751 8.7046 0.5823 16 6 6.8764 10.0840 -0.0084 17 6 8.0344 11.0088 0.2644 18 1 8.8975 10.6486 0.8048 19 6 7.9950 12.3130 -0.1810 20 7 6.9444 12.7515 -0.8395 21 14 9.4339 13.4571 0.1505 22 1 10.4839 12.7264 0.9047 23 1 9.9929 13.9360 -1.1392 24 1 8.9686 14.6188 0.9500 25 6 3.9468 2.7188 -0.7015 26 6 5.3628 2.6056 -1.2849 27 6 5.1316 2.5207 -2.8159 28 6 3.9426 3.4889 -3.0393 29 6 3.0401 3.2732 -1.8045 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.0392 1.7681 1.4890 36 1 3.3592 1.9068 2.1663 37 1 5.7558 4.0131 1.3967 38 1 5.2737 8.1293 -0.1674 39 1 8.0779 8.3005 0.1244 40 1 7.3227 8.7948 1.6585 41 1 5.9736 10.4877 0.4499 42 1 6.7284 9.9940 -1.0846 43 1 6.9168 13.6689 -1.1532 44 1 5.9507 3.4890 -1.0356 45 1 5.8547 1.7032 -0.9221 46 1 4.8635 1.5060 -3.1099 47 1 6.0135 2.8608 -3.3587 48 1 3.4071 3.2308 -3.9529 49 1 4.2913 4.5208 -3.0813 50 1 2.2523 2.5568 -2.0369 51 1 2.6030 4.2206 -1.4889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323070990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:55 Heat of formation + Delta-G solvation = -134.703103 kcal Electronic energy + Delta-G solvation = -29990.942799 eV Core-core repulsion = 25889.450854 eV Total energy + Delta-G solvation = -4101.491945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26759 -41.15376 -39.38356 -38.06891 -36.91114 -36.19922 -34.89815 -34.02850 -31.70667 -31.61168 -29.70246 -27.91467 -27.68656 -26.24434 -24.24078 -23.77962 -22.81101 -22.76952 -21.58062 -21.34530 -20.01137 -19.15763 -18.59313 -18.08016 -17.49891 -17.17199 -16.92775 -16.65663 -16.50013 -16.33519 -16.25250 -15.91181 -15.43470 -14.96874 -14.72597 -14.44697 -14.32734 -14.28526 -14.21996 -13.83360 -13.53486 -13.26376 -13.10028 -12.97050 -12.84508 -12.77856 -12.51659 -12.35050 -12.30701 -12.21682 -11.95371 -11.93590 -11.73749 -11.69414 -11.62645 -11.44686 -11.42471 -11.20077 -10.63867 -10.63217 -10.35095 -10.22892 -10.10002 -8.24407 -6.35788 0.34261 1.33977 1.41913 1.43298 1.56182 2.13578 2.39329 2.56127 2.70927 3.10502 3.38496 3.41077 3.46864 3.62404 3.71031 3.92703 4.18304 4.24867 4.27361 4.32726 4.37494 4.38924 4.43699 4.55786 4.56599 4.62328 4.68160 4.77282 4.79480 4.81215 4.91643 4.91742 5.00743 5.04722 5.07282 5.08318 5.15538 5.21219 5.23936 5.30922 5.37400 5.41094 5.43068 5.48284 5.53194 5.74724 5.96223 6.11785 6.36746 6.37938 6.72839 6.79791 6.95208 7.33882 8.87878 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002029 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.643054 B =13799.199783 C =14000.648106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.383 6.383 4 C 0.087 3.913 5 H 0.105 0.895 6 C -0.146 4.146 7 C 0.128 3.872 8 H 0.091 0.909 9 N -0.674 5.674 10 C 0.513 3.487 11 O -0.537 6.537 12 C 0.499 3.501 13 O -0.548 6.548 14 N -0.690 5.690 15 C 0.138 3.862 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.092 4.092 26 C -0.098 4.098 27 C -0.118 4.118 28 C -0.128 4.128 29 C -0.100 4.100 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.120 0.880 36 H 0.090 0.910 37 H 0.420 0.580 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.006 0.994 42 H 0.007 0.993 43 H 0.265 0.735 44 H 0.055 0.945 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.040 0.960 50 H 0.073 0.927 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -31.689 0.840 33.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.302 6.302 4 C 0.029 3.971 5 H 0.123 0.877 6 C -0.184 4.184 7 C 0.024 3.976 8 H 0.109 0.891 9 N -0.326 5.326 10 C 0.294 3.706 11 O -0.413 6.413 12 C 0.280 3.720 13 O -0.427 6.427 14 N -0.341 5.341 15 C 0.016 3.984 16 C -0.019 4.019 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.794 3.206 22 H -0.185 1.185 23 H -0.204 1.204 24 H -0.204 1.204 25 C -0.093 4.093 26 C -0.136 4.136 27 C -0.156 4.156 28 C -0.166 4.166 29 C -0.138 4.138 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.258 0.742 38 H 0.249 0.751 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.084 0.916 48 H 0.089 0.911 49 H 0.059 0.941 50 H 0.092 0.908 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.392 -31.374 0.770 32.758 hybrid contribution 0.439 1.266 -0.053 1.341 sum -8.953 -30.108 0.717 31.419 Atomic orbital electron populations 1.21771 0.93571 1.03188 1.02407 1.22713 0.95785 0.82773 1.01160 1.87903 1.19887 1.27995 1.94423 1.22794 0.81739 0.97440 0.95158 0.87681 1.23846 1.03869 0.92045 0.98622 1.22744 0.89105 0.88812 0.96946 0.89094 1.45690 1.22152 1.09007 1.55786 1.19980 0.86615 0.83877 0.80162 1.90757 1.34184 1.76191 1.40207 1.20416 0.87726 0.83522 0.80354 1.90706 1.34711 1.76093 1.41187 1.46088 1.22387 1.10276 1.55340 1.21472 0.87393 0.89368 1.00199 1.19179 0.96855 0.90360 0.95538 1.21476 1.03786 0.96408 1.36522 0.91636 1.25943 0.98998 1.00016 0.94572 1.70091 1.30811 1.17334 1.38577 0.85332 0.78936 0.78304 0.78071 1.18532 1.20359 1.20392 1.22744 0.96758 0.95592 0.94245 1.22070 0.93545 1.02501 0.95447 1.22509 0.97623 0.99914 0.95538 1.22397 0.97165 0.98818 0.98201 1.21809 0.97718 1.00089 0.94170 0.92590 0.92753 0.89263 0.92275 0.92019 0.86165 0.89170 0.74187 0.75076 0.91991 0.92033 0.97516 0.97499 0.92578 0.92589 0.88835 0.89793 0.91640 0.91138 0.94113 0.90836 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 71.98 0.74 -0.71 16 2 C 0.05 0.52 6.50 71.98 0.47 0.98 16 3 O -0.38 -5.97 9.10 -148.98 -1.36 -7.32 16 4 C 0.09 1.11 3.76 30.91 0.12 1.22 16 5 H 0.11 0.86 7.76 -2.39 -0.02 0.84 16 6 C -0.15 -1.72 7.45 31.21 0.23 -1.48 16 7 C 0.13 2.48 3.32 45.30 0.15 2.63 16 8 H 0.09 2.22 7.96 -2.38 -0.02 2.20 16 9 N -0.67 -14.96 3.97 -442.38 -1.76 -16.72 16 10 C 0.51 15.48 7.74 87.27 0.68 16.16 16 11 O -0.54 -18.65 16.03 -3.24 -0.05 -18.71 16 12 C 0.50 17.29 7.89 87.27 0.69 17.98 16 13 O -0.55 -20.35 16.48 -3.24 -0.05 -20.40 16 14 N -0.69 -25.92 5.55 -464.41 -2.58 -28.49 16 15 C 0.14 5.91 5.61 86.38 0.48 6.39 16 16 C 0.02 0.93 5.09 29.84 0.15 1.09 16 17 C -0.54 -30.30 9.11 25.60 0.23 -30.06 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 19 C 0.00 0.19 5.46 84.65 0.46 0.65 16 20 N -0.93 -55.39 13.29 21.45 0.28 -55.10 16 21 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 22 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 25 C -0.09 -1.60 1.08 -51.93 -0.06 -1.66 16 26 C -0.10 -1.58 5.81 31.49 0.18 -1.40 16 27 C -0.12 -1.93 6.91 31.97 0.22 -1.71 16 28 C -0.13 -2.67 6.84 31.76 0.22 -2.45 16 29 C -0.10 -2.17 6.06 31.15 0.19 -1.98 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 35 H 0.12 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.42 7.90 8.09 -92.71 -0.75 7.15 16 38 H 0.41 15.17 7.94 -92.71 -0.74 14.43 16 39 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.06 1.16 6.85 -2.38 -0.02 1.14 16 45 H 0.09 1.01 7.88 -2.39 -0.02 0.99 16 46 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 1.50 7.19 -2.39 -0.02 1.49 16 51 H 0.04 1.23 7.55 -2.39 -0.02 1.21 16 Total: -1.00 -68.33 413.53 1.11 -67.22 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.56 Total: 28.16 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.16 Total: 5.64 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -4.05 Total: -100.31 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.46 Total: -46.43 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.33 1.11 -67.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.483 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds