Wall clock time and date at job start Tue Mar 31 2020 21:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47278 * 2 1 4 4 C 1.42898 * 114.00378 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.93666 * 338.13451 * 4 3 2 6 6 C 1.53921 * 113.64967 * 109.50201 * 4 3 2 7 7 C 1.53923 * 87.22194 * 89.63251 * 6 4 3 8 8 H 1.08999 * 113.65142 * 139.44628 * 7 6 4 9 9 N 1.46499 * 113.64738 * 270.37551 * 7 6 4 10 10 C 1.34784 * 119.99893 * 255.49318 * 9 7 6 11 11 O 1.21341 * 119.99658 * 0.02562 * 10 9 7 12 12 C 1.49448 * 119.99762 * 179.72897 * 10 9 7 13 13 O 1.21348 * 120.00622 * 359.97438 * 12 10 9 14 14 N 1.34774 * 119.99767 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00210 * 179.97438 * 14 12 10 16 16 C 1.53001 * 109.47427 * 179.97438 * 15 14 12 17 17 C 1.50693 * 109.47512 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99607 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00209 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00107 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99860 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47088 * 90.00446 * 21 19 17 23 23 H 1.48505 * 109.47152 * 209.99923 * 21 19 17 24 24 H 1.48494 * 109.47142 * 329.99923 * 21 19 17 25 25 C 1.53015 * 86.85232 * 24.86044 * 7 6 4 26 26 C 1.53561 * 115.13653 * 218.15622 * 25 7 6 27 27 C 1.55075 * 103.98240 * 206.85698 * 26 25 7 28 28 C 1.54949 * 102.85803 * 37.30742 * 27 26 25 29 29 C 1.53172 * 115.37029 * 92.14697 * 25 7 6 30 30 H 1.08997 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47134 * 300.00012 * 1 2 3 32 32 H 1.08999 * 109.47070 * 60.00240 * 1 2 3 33 33 H 1.08997 * 109.47212 * 239.99451 * 2 1 3 34 34 H 1.09008 * 109.46932 * 119.99903 * 2 1 3 35 35 H 1.08995 * 113.59293 * 335.04530 * 6 4 3 36 36 H 1.08997 * 113.59267 * 204.21728 * 6 4 3 37 37 H 0.97005 * 120.00261 * 75.49530 * 9 7 6 38 38 H 0.97004 * 120.00037 * 0.02562 * 14 12 10 39 39 H 1.08998 * 109.47521 * 300.00219 * 15 14 12 40 40 H 1.09001 * 109.46777 * 60.00164 * 15 14 12 41 41 H 1.08998 * 109.47065 * 300.00641 * 16 15 14 42 42 H 1.09006 * 109.46890 * 59.99899 * 16 15 14 43 43 H 0.97001 * 119.99847 * 180.02562 * 20 19 17 44 44 H 1.08997 * 110.52704 * 325.47969 * 26 25 7 45 45 H 1.08992 * 110.52749 * 88.23428 * 26 25 7 46 46 H 1.08998 * 110.73330 * 278.96397 * 27 26 25 47 47 H 1.09004 * 110.88548 * 155.71856 * 27 26 25 48 48 H 1.08992 * 110.48060 * 203.76613 * 28 27 26 49 49 H 1.08998 * 110.59484 * 81.18990 * 28 27 26 50 50 H 1.08996 * 110.09360 * 248.87612 * 29 25 7 51 51 H 1.09002 * 110.09609 * 10.46945 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9277 0.5650 0.3748 6 6 4.0097 1.9779 -1.3283 7 6 3.8579 3.3981 -0.7546 8 1 4.6959 4.0553 -0.9866 9 7 2.5579 4.0109 -1.0390 10 6 2.4553 4.9653 -1.9852 11 8 3.4396 5.3166 -2.6017 12 6 1.1281 5.5860 -2.2795 13 8 0.1427 5.2305 -1.6670 14 7 1.0255 6.5407 -3.2252 15 6 -0.2755 7.1489 -3.5142 16 6 -0.1154 8.1953 -4.6189 17 6 -1.4537 8.8213 -4.9157 18 1 -2.3307 8.5048 -4.3706 19 6 -1.5585 9.7981 -5.8831 20 7 -0.4907 10.1831 -6.5473 21 14 -3.2173 10.5745 -6.2505 22 1 -3.4106 11.7635 -5.3820 23 1 -3.2649 10.9897 -7.6755 24 1 -4.2951 9.5879 -5.9861 25 6 3.9437 2.7563 0.6317 26 6 3.0221 3.3728 1.6941 27 6 3.7495 3.0857 3.0333 28 6 5.2427 3.2647 2.6599 29 6 5.3501 2.6805 1.2339 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.3689 1.7840 -2.1883 36 1 5.0457 1.6840 -1.4968 37 1 1.7710 3.7297 -0.5464 38 1 1.8132 6.8247 -3.7151 39 1 -0.9724 6.3776 -3.8421 40 1 -0.6608 7.6276 -2.6139 41 1 0.5813 8.9665 -4.2906 42 1 0.2701 7.7169 -5.5193 43 1 -0.5644 10.8706 -7.2276 44 1 2.9216 4.4465 1.5363 45 1 2.0450 2.8901 1.6790 46 1 3.5547 2.0667 3.3675 47 1 3.4541 3.8044 3.7978 48 1 5.8775 2.7078 3.3489 49 1 5.5143 4.3203 2.6609 50 1 5.6831 1.6436 1.2782 51 1 6.0450 3.2724 0.6381 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323070991.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:58 Heat of formation + Delta-G solvation = -135.830111 kcal Electronic energy + Delta-G solvation = -30030.879852 eV Core-core repulsion = 25929.339036 eV Total energy + Delta-G solvation = -4101.540816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.29949 -41.21297 -39.43531 -38.08044 -36.92207 -36.16587 -34.89329 -33.91334 -31.75945 -31.69232 -29.60999 -27.84798 -27.70069 -26.27042 -24.52733 -23.75061 -22.93025 -22.48749 -21.77381 -21.12158 -20.16869 -19.04738 -18.59530 -17.87565 -17.46277 -17.17112 -16.91419 -16.85214 -16.61982 -16.48907 -16.15319 -15.78098 -15.52025 -14.98726 -14.66862 -14.62408 -14.34384 -14.30605 -14.21090 -13.89934 -13.42606 -13.27410 -13.07717 -12.95541 -12.91029 -12.82643 -12.53638 -12.32587 -12.29829 -12.17180 -11.97281 -11.92989 -11.81419 -11.69797 -11.46461 -11.44930 -11.42006 -11.12136 -10.69302 -10.62559 -10.32809 -10.25533 -10.15484 -8.24315 -6.35744 0.29393 1.28260 1.42825 1.43244 1.54896 2.08813 2.37772 2.47491 2.74874 3.10522 3.29555 3.39900 3.51648 3.72100 3.74615 3.94765 4.16379 4.22014 4.29630 4.35622 4.37056 4.42912 4.48980 4.52742 4.53570 4.63114 4.66811 4.70837 4.78955 4.82389 4.91097 4.94310 4.98004 5.05696 5.05893 5.11376 5.16156 5.23862 5.26631 5.30360 5.33233 5.40667 5.45769 5.50548 5.53131 5.74557 5.94753 6.11746 6.32686 6.39273 6.70195 6.78683 6.91611 7.33810 8.87852 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.002187 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.195724 B =12800.774837 C =13489.745121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.081 3.919 5 H 0.102 0.898 6 C -0.169 4.169 7 C 0.118 3.882 8 H 0.097 0.903 9 N -0.663 5.663 10 C 0.514 3.486 11 O -0.542 6.542 12 C 0.499 3.501 13 O -0.548 6.548 14 N -0.688 5.688 15 C 0.138 3.862 16 C 0.019 3.981 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.264 1.264 25 C -0.078 4.078 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.123 4.123 29 C -0.093 4.093 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.124 0.876 37 H 0.419 0.581 38 H 0.414 0.586 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.008 0.992 42 H 0.007 0.993 43 H 0.266 0.734 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.060 0.940 50 H 0.092 0.908 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.780 -23.777 19.780 33.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 O -0.304 6.304 4 C 0.023 3.977 5 H 0.120 0.880 6 C -0.207 4.207 7 C 0.013 3.987 8 H 0.115 0.885 9 N -0.315 5.315 10 C 0.295 3.705 11 O -0.420 6.420 12 C 0.279 3.721 13 O -0.427 6.427 14 N -0.339 5.339 15 C 0.015 3.985 16 C -0.018 4.018 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.188 1.188 25 C -0.079 4.079 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.160 4.160 29 C -0.131 4.131 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.257 0.743 38 H 0.251 0.749 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.079 0.921 50 H 0.111 0.889 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.691 -23.507 19.638 33.155 hybrid contribution -0.778 0.696 -0.789 1.308 sum 11.913 -22.811 18.849 31.899 Atomic orbital electron populations 1.21775 0.93871 1.03114 1.02300 1.22636 0.95464 0.82789 1.00988 1.87828 1.20185 1.27960 1.94426 1.23110 0.81602 0.97896 0.95096 0.88035 1.24055 1.03338 0.95074 0.98278 1.22177 0.84698 0.94612 0.97166 0.88535 1.45392 1.12772 1.36573 1.36737 1.19982 0.88366 0.80941 0.81255 1.90733 1.38502 1.62757 1.50010 1.20349 0.89468 0.81091 0.81144 1.90718 1.39034 1.62400 1.50513 1.46060 1.13276 1.37417 1.37150 1.21485 0.82584 0.95491 0.98907 1.19170 0.97101 0.92874 0.92658 1.21443 0.94892 1.21337 1.20677 0.91726 1.25931 1.00829 0.97121 0.95535 1.70080 1.30795 1.31052 1.24865 0.85390 0.79148 0.78775 0.77399 1.19715 1.20670 1.18776 1.22581 0.98025 0.94623 0.92653 1.22136 0.99010 0.99655 0.94496 1.22489 0.95145 1.01895 0.96117 1.22417 0.96449 1.01103 0.96075 1.21884 0.92304 1.03027 0.95880 0.89266 0.92262 0.93481 0.92912 0.91555 0.91981 0.85742 0.74310 0.74946 0.92114 0.92043 0.97403 0.97426 0.92534 0.92978 0.91056 0.90731 0.91664 0.89929 0.92108 0.88948 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.28 71.98 0.74 -1.39 16 2 C 0.06 0.75 6.51 71.98 0.47 1.21 16 3 O -0.38 -6.74 7.74 -148.98 -1.15 -7.89 16 4 C 0.08 1.10 3.83 30.91 0.12 1.22 16 5 H 0.10 0.89 7.62 -2.39 -0.02 0.87 16 6 C -0.17 -2.70 7.55 31.21 0.24 -2.46 16 7 C 0.12 2.38 3.75 45.31 0.17 2.55 16 8 H 0.10 2.12 7.27 -2.39 -0.02 2.10 16 9 N -0.66 -17.30 4.64 -442.37 -2.05 -19.35 16 10 C 0.51 16.67 7.89 87.27 0.69 17.36 16 11 O -0.54 -19.31 16.12 -3.22 -0.05 -19.36 16 12 C 0.50 18.39 7.89 87.27 0.69 19.08 16 13 O -0.55 -22.01 16.48 -3.24 -0.05 -22.06 16 14 N -0.69 -26.60 5.55 -464.42 -2.58 -29.17 16 15 C 0.14 6.02 5.61 86.38 0.48 6.51 16 16 C 0.02 1.01 5.09 29.85 0.15 1.16 16 17 C -0.55 -30.62 9.11 25.60 0.23 -30.39 16 18 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -55.52 13.29 21.45 0.28 -55.23 16 21 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 C -0.08 -1.12 1.04 -51.93 -0.05 -1.18 16 26 C -0.12 -1.91 5.00 31.49 0.16 -1.76 16 27 C -0.12 -1.45 6.91 31.97 0.22 -1.23 16 28 C -0.12 -1.24 6.85 31.76 0.22 -1.03 16 29 C -0.09 -0.92 6.15 31.15 0.19 -0.73 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.12 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.42 11.09 6.49 -92.70 -0.60 10.49 16 38 H 0.41 15.41 7.95 -92.71 -0.74 14.68 16 39 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.05 1.05 7.97 -2.39 -0.02 1.03 16 45 H 0.07 1.33 6.81 -2.39 -0.02 1.32 16 46 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.09 0.55 7.73 -2.39 -0.02 0.53 16 51 H 0.08 0.76 7.74 -2.39 -0.02 0.74 16 Total: -1.00 -67.81 411.33 1.19 -66.62 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.41 Total: 30.89 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 5.18 Total: 9.65 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.34 Total: -103.76 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -1.26 Total: -49.31 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.81 1.19 -66.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070991.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.212 kcal (2) G-P(sol) polarization free energy of solvation -67.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds