Wall clock time and date at job start Tue Mar 31 2020 21:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47191 * 2 1 4 4 C 1.42905 * 114.00204 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.87516 * 21.80218 * 4 3 2 6 6 C 1.53916 * 113.65093 * 250.49557 * 4 3 2 7 7 C 1.53924 * 87.22283 * 270.37473 * 6 4 3 8 8 H 1.08999 * 113.64727 * 220.55975 * 7 6 4 9 9 N 1.46489 * 113.65460 * 89.62561 * 7 6 4 10 10 C 1.34778 * 120.00345 * 104.50553 * 9 7 6 11 11 O 1.21349 * 119.99370 * 0.02562 * 10 9 7 12 12 C 1.49450 * 120.00554 * 179.97438 * 10 9 7 13 13 O 1.21355 * 119.99731 * 0.02562 * 12 10 9 14 14 N 1.34769 * 120.00185 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00115 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47157 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.47012 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99859 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99858 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46954 * 90.00035 * 21 19 17 23 23 H 1.48495 * 109.47123 * 209.99837 * 21 19 17 24 24 H 1.48496 * 109.47269 * 330.00381 * 21 19 17 25 25 C 1.53010 * 113.65361 * 153.23129 * 4 3 2 26 26 C 1.53570 * 115.13743 * 332.64821 * 25 4 3 27 27 C 1.55062 * 103.98385 * 206.85217 * 26 25 4 28 28 C 1.54953 * 102.85868 * 37.30177 * 27 26 25 29 29 C 1.53166 * 115.37730 * 206.63439 * 25 4 3 30 30 H 1.09002 * 109.46784 * 300.00208 * 1 2 3 31 31 H 1.09000 * 109.47168 * 60.00523 * 1 2 3 32 32 H 1.09006 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47287 * 239.99825 * 2 1 3 34 34 H 1.09002 * 109.47201 * 120.00260 * 2 1 3 35 35 H 1.09003 * 113.59472 * 24.95544 * 6 4 3 36 36 H 1.08996 * 113.59584 * 155.70361 * 6 4 3 37 37 H 0.97002 * 120.00242 * 284.50889 * 9 7 6 38 38 H 0.97008 * 120.00214 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.46573 * 299.99703 * 15 14 12 40 40 H 1.08998 * 109.47265 * 59.99291 * 15 14 12 41 41 H 1.08999 * 109.47122 * 299.99348 * 16 15 14 42 42 H 1.08998 * 109.47627 * 59.99494 * 16 15 14 43 43 H 0.96996 * 120.00160 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.52185 * 325.47606 * 26 25 4 45 45 H 1.09002 * 110.52231 * 88.22315 * 26 25 4 46 46 H 1.08999 * 110.73732 * 278.96025 * 27 26 25 47 47 H 1.09001 * 110.73432 * 155.64588 * 27 26 25 48 48 H 1.09001 * 110.48043 * 203.75858 * 28 27 26 49 49 H 1.09008 * 110.58888 * 81.19415 * 28 27 26 50 50 H 1.08998 * 110.09409 * 248.87826 * 29 25 4 51 51 H 1.09002 * 110.09230 * 10.40839 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9268 0.5641 -0.3739 6 6 4.0098 1.9780 1.3282 7 6 3.8578 3.3982 0.7546 8 1 4.6959 4.0554 0.9864 9 7 2.5580 4.0109 1.0390 10 6 2.4553 4.9653 1.9851 11 8 3.4398 5.3174 2.6010 12 6 1.1293 5.5909 2.2748 13 8 0.1449 5.2391 1.6586 14 7 1.0268 6.5456 3.2205 15 6 -0.2731 7.1584 3.5050 16 6 -0.1132 8.2037 4.6106 17 6 -1.4503 8.8345 4.9028 18 1 -2.3264 8.5214 4.3543 19 6 -1.5551 9.8113 5.8702 20 7 -0.4883 10.1922 6.5384 21 14 -3.2124 10.5937 6.2318 22 1 -3.9049 9.8184 7.2923 23 1 -3.0102 11.9910 6.6921 24 1 -4.0395 10.5936 4.9985 25 6 3.9438 2.7561 -0.6319 26 6 3.0223 3.3736 -1.6939 27 6 3.9877 4.1672 -2.6119 28 6 5.2411 3.2575 -2.6627 29 6 5.3503 2.6814 -1.2336 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3689 1.7840 2.1884 36 1 5.0453 1.6829 1.4974 37 1 1.7710 3.7297 0.5464 38 1 1.8137 6.8265 3.7134 39 1 -0.6532 7.6388 2.6034 40 1 -0.9740 6.3894 3.8299 41 1 0.2672 7.7236 5.5123 42 1 0.5876 8.9726 4.2852 43 1 -0.5621 10.8791 7.2192 44 1 2.5132 2.5927 -2.2588 45 1 2.2991 4.0439 -1.2293 46 1 4.2306 5.1345 -2.1723 47 1 3.5600 4.2907 -3.6069 48 1 6.1276 3.8429 -2.9068 49 1 5.1034 2.4552 -3.3878 50 1 6.0433 3.2787 -0.6412 51 1 5.6870 1.6454 -1.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323070992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:02 Heat of formation + Delta-G solvation = -112.699966 kcal Electronic energy + Delta-G solvation = -30061.755922 eV Core-core repulsion = 25961.218105 eV Total energy + Delta-G solvation = -4100.537817 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.44837 -39.92342 -38.05362 -37.48467 -35.52940 -34.96450 -33.13347 -32.71005 -31.11146 -29.77501 -29.02404 -27.23593 -26.19136 -24.82749 -23.43443 -22.98037 -21.86503 -21.11905 -20.85327 -19.97298 -19.13033 -18.05777 -16.93813 -16.73723 -16.26787 -16.13750 -16.02580 -15.80687 -15.50637 -15.18434 -14.64005 -14.43475 -14.24062 -13.96362 -13.73630 -13.59043 -13.49391 -13.19807 -12.85978 -12.74665 -12.40807 -12.30820 -12.26335 -11.75811 -11.57004 -11.46583 -11.38774 -11.25989 -11.24484 -11.18198 -11.04297 -10.90088 -10.75803 -10.64850 -10.42080 -10.36650 -9.75820 -9.69588 -9.40476 -9.16735 -9.12737 -8.64439 -8.39267 -6.08281 -4.11804 1.69012 2.55807 3.15917 3.30323 3.36502 3.40424 3.48986 3.88032 4.07194 4.14135 4.32029 4.42321 4.43615 4.57718 4.72445 4.77127 4.82006 4.87654 4.95194 5.05607 5.09095 5.17077 5.21424 5.28557 5.29521 5.36004 5.44270 5.49676 5.54176 5.62284 5.63450 5.68697 5.80102 5.84017 5.86903 5.91085 6.00280 6.07467 6.22435 6.27775 6.35086 6.64733 6.74121 6.93251 7.22141 7.51274 7.60813 7.76689 7.89513 8.02337 8.25157 8.40163 8.93883 9.52951 11.03267 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.002220 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.066647 B =12608.011795 C =13356.743921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.076 3.924 5 H 0.075 0.925 6 C -0.175 4.175 7 C 0.139 3.861 8 H 0.105 0.895 9 N -0.679 5.679 10 C 0.509 3.491 11 O -0.523 6.523 12 C 0.497 3.503 13 O -0.531 6.531 14 N -0.687 5.687 15 C 0.119 3.881 16 C 0.011 3.989 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.272 1.272 25 C -0.089 4.089 26 C -0.106 4.106 27 C -0.127 4.127 28 C -0.123 4.123 29 C -0.096 4.096 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.419 0.581 38 H 0.410 0.590 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.434 -21.817 -18.300 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.281 6.281 4 C 0.017 3.983 5 H 0.093 0.907 6 C -0.214 4.214 7 C 0.033 3.967 8 H 0.123 0.877 9 N -0.333 5.333 10 C 0.290 3.710 11 O -0.399 6.399 12 C 0.277 3.723 13 O -0.409 6.409 14 N -0.338 5.338 15 C -0.002 4.002 16 C -0.026 4.026 17 C -0.561 4.561 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.090 4.090 26 C -0.144 4.144 27 C -0.164 4.164 28 C -0.160 4.160 29 C -0.134 4.134 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.258 0.742 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.329 -21.502 -18.134 30.711 hybrid contribution -0.680 0.167 0.427 0.820 sum 11.649 -21.334 -17.708 30.074 Atomic orbital electron populations 1.21759 0.93456 1.02240 1.03624 1.22512 0.95748 0.83476 0.99846 1.87867 1.19190 1.26575 1.94443 1.23100 0.82058 0.97048 0.96048 0.90668 1.24022 1.02134 0.96671 0.98526 1.21779 0.86549 0.93874 0.94524 0.87707 1.45454 1.11550 1.38034 1.38298 1.20470 0.89773 0.80268 0.80443 1.90740 1.38438 1.61800 1.48875 1.19974 0.88579 0.81758 0.82038 1.90734 1.38136 1.62159 1.49867 1.46218 1.14151 1.36965 1.36463 1.21918 0.81488 0.96422 1.00419 1.19354 0.98382 0.92644 0.92266 1.21021 0.93934 1.20845 1.20330 0.92171 1.25004 0.96854 0.96609 0.95831 1.69959 1.28497 1.30600 1.24060 0.86498 0.83800 0.78488 0.78676 1.20557 1.21162 1.19725 1.22583 0.96872 0.94993 0.94509 1.22117 0.97231 0.99306 0.95701 1.22551 0.95491 0.98669 0.99699 1.22396 0.98415 0.99027 0.96194 1.21837 0.93714 1.01598 0.96203 0.91484 0.91691 0.91177 0.93469 0.93433 0.90087 0.88216 0.74231 0.75436 0.91905 0.91925 0.95685 0.95663 0.92786 0.90833 0.90902 0.91363 0.91515 0.91478 0.91632 0.90700 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.06 0.45 6.51 37.16 0.24 0.69 16 3 O -0.36 -3.43 8.41 -35.23 -0.30 -3.73 16 4 C 0.08 0.60 3.81 -26.25 -0.10 0.50 16 5 H 0.08 0.47 7.62 -51.93 -0.40 0.08 16 6 C -0.17 -1.54 7.55 -25.78 -0.19 -1.74 16 7 C 0.14 1.45 3.77 -67.44 -0.25 1.19 16 8 H 0.11 1.18 7.26 -51.93 -0.38 0.80 16 9 N -0.68 -8.81 4.39 -53.76 -0.24 -9.05 16 10 C 0.51 8.13 7.89 -11.58 -0.09 8.03 16 11 O -0.52 -9.18 16.12 5.50 0.09 -9.09 16 12 C 0.50 9.00 7.89 -11.59 -0.09 8.91 16 13 O -0.53 -10.53 16.48 5.49 0.09 -10.44 16 14 N -0.69 -12.98 5.55 -60.73 -0.34 -13.32 16 15 C 0.12 2.55 5.61 -4.04 -0.02 2.53 16 16 C 0.01 0.28 5.09 -27.88 -0.14 0.13 16 17 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 21 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.09 -0.72 1.04 -154.11 -0.16 -0.88 16 26 C -0.11 -0.92 5.39 -25.35 -0.14 -1.06 16 27 C -0.13 -0.97 6.91 -24.61 -0.17 -1.14 16 28 C -0.12 -0.76 6.84 -24.93 -0.17 -0.93 16 29 C -0.10 -0.60 6.15 -25.88 -0.16 -0.76 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 5.48 5.82 -40.82 -0.24 5.25 16 38 H 0.41 7.40 7.95 -40.82 -0.32 7.07 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 45 H 0.07 0.77 6.06 -51.93 -0.31 0.45 16 46 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 50 H 0.07 0.47 7.74 -51.93 -0.40 0.06 16 51 H 0.07 0.35 7.74 -51.93 -0.40 -0.05 16 LS Contribution 410.79 15.07 6.19 6.19 Total: -1.00 -31.46 410.79 -9.02 -40.48 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -8.75 Total: 6.68 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.48 Total: 1.47 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.16 Total: -47.97 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.12 Total: -23.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.46 -9.02 -40.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.224 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds