Wall clock time and date at job start Tue Mar 31 2020 21:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47191 * 2 1 4 4 C 1.42905 * 114.00204 * 180.02562 * 3 2 1 5 5 H 1.08999 * 112.87516 * 21.80218 * 4 3 2 6 6 C 1.53916 * 113.65093 * 250.49557 * 4 3 2 7 7 C 1.53924 * 87.22283 * 270.37473 * 6 4 3 8 8 H 1.08999 * 113.64727 * 220.55975 * 7 6 4 9 9 N 1.46489 * 113.65460 * 89.62561 * 7 6 4 10 10 C 1.34778 * 120.00345 * 104.50553 * 9 7 6 11 11 O 1.21349 * 119.99370 * 0.02562 * 10 9 7 12 12 C 1.49450 * 120.00554 * 179.97438 * 10 9 7 13 13 O 1.21355 * 119.99731 * 0.02562 * 12 10 9 14 14 N 1.34769 * 120.00185 * 180.02562 * 12 10 9 15 15 C 1.46501 * 120.00115 * 180.02562 * 14 12 10 16 16 C 1.52997 * 109.47157 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.47012 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99859 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99873 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00158 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99858 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46954 * 90.00035 * 21 19 17 23 23 H 1.48495 * 109.47123 * 209.99837 * 21 19 17 24 24 H 1.48496 * 109.47269 * 330.00381 * 21 19 17 25 25 C 1.53010 * 113.65361 * 153.23129 * 4 3 2 26 26 C 1.53570 * 115.13743 * 332.64821 * 25 4 3 27 27 C 1.55062 * 103.98385 * 206.85217 * 26 25 4 28 28 C 1.54953 * 102.85868 * 37.30177 * 27 26 25 29 29 C 1.53166 * 115.37730 * 206.63439 * 25 4 3 30 30 H 1.09002 * 109.46784 * 300.00208 * 1 2 3 31 31 H 1.09000 * 109.47168 * 60.00523 * 1 2 3 32 32 H 1.09006 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47287 * 239.99825 * 2 1 3 34 34 H 1.09002 * 109.47201 * 120.00260 * 2 1 3 35 35 H 1.09003 * 113.59472 * 24.95544 * 6 4 3 36 36 H 1.08996 * 113.59584 * 155.70361 * 6 4 3 37 37 H 0.97002 * 120.00242 * 284.50889 * 9 7 6 38 38 H 0.97008 * 120.00214 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.46573 * 299.99703 * 15 14 12 40 40 H 1.08998 * 109.47265 * 59.99291 * 15 14 12 41 41 H 1.08999 * 109.47122 * 299.99348 * 16 15 14 42 42 H 1.08998 * 109.47627 * 59.99494 * 16 15 14 43 43 H 0.96996 * 120.00160 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.52185 * 325.47606 * 26 25 4 45 45 H 1.09002 * 110.52231 * 88.22315 * 26 25 4 46 46 H 1.08999 * 110.73732 * 278.96025 * 27 26 25 47 47 H 1.09001 * 110.73432 * 155.64588 * 27 26 25 48 48 H 1.09001 * 110.48043 * 203.75858 * 28 27 26 49 49 H 1.09008 * 110.58888 * 81.19415 * 28 27 26 50 50 H 1.08998 * 110.09409 * 248.87826 * 29 25 4 51 51 H 1.09002 * 110.09230 * 10.40839 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9268 0.5641 -0.3739 6 6 4.0098 1.9780 1.3282 7 6 3.8578 3.3982 0.7546 8 1 4.6959 4.0554 0.9864 9 7 2.5580 4.0109 1.0390 10 6 2.4553 4.9653 1.9851 11 8 3.4398 5.3174 2.6010 12 6 1.1293 5.5909 2.2748 13 8 0.1449 5.2391 1.6586 14 7 1.0268 6.5456 3.2205 15 6 -0.2731 7.1584 3.5050 16 6 -0.1132 8.2037 4.6106 17 6 -1.4503 8.8345 4.9028 18 1 -2.3264 8.5214 4.3543 19 6 -1.5551 9.8113 5.8702 20 7 -0.4883 10.1922 6.5384 21 14 -3.2124 10.5937 6.2318 22 1 -3.9049 9.8184 7.2923 23 1 -3.0102 11.9910 6.6921 24 1 -4.0395 10.5936 4.9985 25 6 3.9438 2.7561 -0.6319 26 6 3.0223 3.3736 -1.6939 27 6 3.9877 4.1672 -2.6119 28 6 5.2411 3.2575 -2.6627 29 6 5.3503 2.6814 -1.2336 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3689 1.7840 2.1884 36 1 5.0453 1.6829 1.4974 37 1 1.7710 3.7297 0.5464 38 1 1.8137 6.8265 3.7134 39 1 -0.6532 7.6388 2.6034 40 1 -0.9740 6.3894 3.8299 41 1 0.2672 7.7236 5.5123 42 1 0.5876 8.9726 4.2852 43 1 -0.5621 10.8791 7.2192 44 1 2.5132 2.5927 -2.2588 45 1 2.2991 4.0439 -1.2293 46 1 4.2306 5.1345 -2.1723 47 1 3.5600 4.2907 -3.6069 48 1 6.1276 3.8429 -2.9068 49 1 5.1034 2.4552 -3.3878 50 1 6.0433 3.2787 -0.6412 51 1 5.6870 1.6454 -1.2712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323070992.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:01 Heat of formation + Delta-G solvation = -132.906280 kcal Electronic energy + Delta-G solvation = -30062.632134 eV Core-core repulsion = 25961.218105 eV Total energy + Delta-G solvation = -4101.414029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31905 -41.20521 -39.42956 -38.11975 -36.91774 -36.11910 -34.89672 -33.97008 -31.74824 -31.68935 -29.62480 -27.90754 -27.65024 -26.26189 -24.54684 -23.75097 -22.92499 -22.49911 -21.78118 -21.10969 -20.19259 -19.09619 -18.59725 -17.84037 -17.56099 -17.18758 -16.85113 -16.64263 -16.61069 -16.48022 -16.30405 -15.74594 -15.66511 -14.99925 -14.69158 -14.53228 -14.35215 -14.31690 -14.16416 -13.89274 -13.43865 -13.27534 -13.08230 -12.95611 -12.90960 -12.83320 -12.53668 -12.36959 -12.29958 -12.18929 -11.95811 -11.89428 -11.86129 -11.69904 -11.46530 -11.44822 -11.42317 -11.11366 -10.69919 -10.62635 -10.33001 -10.25760 -10.15545 -8.24372 -6.35810 0.28936 1.27834 1.42774 1.43193 1.54889 2.08330 2.37816 2.48152 2.74223 3.10464 3.30841 3.39434 3.49685 3.71422 3.74737 3.93972 4.15592 4.21885 4.28928 4.35738 4.36911 4.42735 4.45874 4.52856 4.57514 4.61402 4.67005 4.70231 4.78787 4.81476 4.90359 4.93929 4.96663 5.05517 5.05562 5.08527 5.17208 5.23727 5.26402 5.29731 5.34144 5.39354 5.42123 5.50126 5.53042 5.74453 5.94213 6.11607 6.32536 6.39290 6.69665 6.78530 6.91145 7.33738 8.87816 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016134 B = 0.002220 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.066647 B =12608.011795 C =13356.743921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.080 3.920 5 H 0.103 0.897 6 C -0.169 4.169 7 C 0.119 3.881 8 H 0.097 0.903 9 N -0.663 5.663 10 C 0.514 3.486 11 O -0.542 6.542 12 C 0.499 3.501 13 O -0.548 6.548 14 N -0.688 5.688 15 C 0.138 3.862 16 C 0.019 3.981 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.264 1.264 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.129 4.129 28 C -0.118 4.118 29 C -0.093 4.093 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.125 0.875 37 H 0.419 0.581 38 H 0.414 0.586 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.902 -23.567 -19.667 33.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 O -0.305 6.305 4 C 0.021 3.979 5 H 0.121 0.879 6 C -0.208 4.208 7 C 0.014 3.986 8 H 0.115 0.885 9 N -0.316 5.316 10 C 0.294 3.706 11 O -0.420 6.420 12 C 0.279 3.721 13 O -0.427 6.427 14 N -0.339 5.339 15 C 0.015 3.985 16 C -0.018 4.018 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.188 1.188 25 C -0.079 4.079 26 C -0.144 4.144 27 C -0.166 4.166 28 C -0.156 4.156 29 C -0.131 4.131 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.143 0.857 37 H 0.258 0.742 38 H 0.251 0.749 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 12.811 -23.291 -19.533 32.987 hybrid contribution -0.811 0.673 0.809 1.329 sum 12.000 -22.617 -18.724 31.720 Atomic orbital electron populations 1.21776 0.93895 1.03106 1.02287 1.22640 0.95463 0.82810 1.00990 1.87849 1.20172 1.27950 1.94508 1.23160 0.81623 0.97922 0.95151 0.87942 1.24056 1.03360 0.95059 0.98288 1.22143 0.84651 0.94609 0.97164 0.88542 1.45477 1.12823 1.36652 1.36644 1.19985 0.88370 0.80969 0.81232 1.90735 1.38451 1.62799 1.49973 1.20350 0.89441 0.81109 0.81161 1.90720 1.39061 1.62589 1.50328 1.46059 1.13389 1.37368 1.37061 1.21487 0.82613 0.95431 0.98937 1.19170 0.97106 0.92878 0.92647 1.21446 0.94983 1.21298 1.20625 0.91728 1.25931 1.00808 0.97126 0.95546 1.70078 1.30797 1.31255 1.24671 0.85389 0.79009 0.77501 0.78812 1.19725 1.20661 1.18773 1.22586 0.98072 0.94465 0.92806 1.22090 0.97144 0.99119 0.96079 1.22557 0.96249 0.98284 0.99539 1.22391 0.97650 0.99028 0.96492 1.21881 0.92208 1.03079 0.95911 0.93508 0.92270 0.89256 0.91533 0.92919 0.92011 0.85708 0.74210 0.74938 0.92064 0.92091 0.97428 0.97390 0.92529 0.90438 0.93306 0.92759 0.91037 0.90791 0.90434 0.90585 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.06 0.75 6.51 71.98 0.47 1.21 16 3 O -0.39 -6.80 8.41 -148.98 -1.25 -8.06 16 4 C 0.08 1.08 3.81 30.91 0.12 1.20 16 5 H 0.10 0.87 7.62 -2.39 -0.02 0.86 16 6 C -0.17 -2.70 7.55 31.21 0.24 -2.47 16 7 C 0.12 2.40 3.77 45.32 0.17 2.57 16 8 H 0.10 2.13 7.26 -2.39 -0.02 2.11 16 9 N -0.66 -17.37 4.39 -442.35 -1.94 -19.32 16 10 C 0.51 16.70 7.89 87.27 0.69 17.39 16 11 O -0.54 -19.31 16.12 -3.24 -0.05 -19.36 16 12 C 0.50 18.42 7.89 87.27 0.69 19.10 16 13 O -0.55 -22.06 16.48 -3.26 -0.05 -22.12 16 14 N -0.69 -26.61 5.55 -464.42 -2.58 -29.19 16 15 C 0.14 6.03 5.61 86.38 0.48 6.51 16 16 C 0.02 1.01 5.09 29.85 0.15 1.16 16 17 C -0.55 -30.63 9.11 25.60 0.23 -30.39 16 18 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 21 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 24 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 25 C -0.08 -1.13 1.04 -51.92 -0.05 -1.18 16 26 C -0.11 -1.77 5.39 31.49 0.17 -1.60 16 27 C -0.13 -1.84 6.91 31.97 0.22 -1.62 16 28 C -0.12 -1.16 6.84 31.76 0.22 -0.95 16 29 C -0.09 -0.90 6.15 31.15 0.19 -0.71 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.42 11.16 5.82 -92.71 -0.54 10.62 16 38 H 0.41 15.43 7.95 -92.70 -0.74 14.69 16 39 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 43 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.08 1.22 8.01 -2.39 -0.02 1.21 16 45 H 0.05 1.04 6.06 -2.39 -0.01 1.02 16 46 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 49 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 50 H 0.08 0.75 7.74 -2.39 -0.02 0.73 16 51 H 0.09 0.53 7.74 -2.39 -0.02 0.51 16 Total: -1.00 -67.96 410.79 1.27 -66.69 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: -0.35 Total: 31.12 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.19 Total: 9.55 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.23 Total: -103.75 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.36 Total: -49.53 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -67.96 1.27 -66.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323070992.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.217 kcal (2) G-P(sol) polarization free energy of solvation -67.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds