Wall clock time and date at job start Tue Mar 31 2020 21:39:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42895 * 109.47135 * 2 1
4 4 C 1.42902 * 114.00139 * 179.97438 * 3 2 1
5 5 C 1.52996 * 109.47300 * 179.97438 * 4 3 2
6 6 H 1.09002 * 109.69775 * 51.37869 * 5 4 3
7 7 C 1.53623 * 109.66452 * 171.96594 * 5 4 3
8 8 C 1.53043 * 109.24348 * 174.55467 * 7 5 4
9 9 C 1.53044 * 109.53622 * 298.51304 * 8 7 5
10 10 C 1.53190 * 109.31397 * 61.36545 * 9 8 7
11 11 N 1.46927 * 109.59042 * 291.02311 * 5 4 3
12 12 C 1.34767 * 120.63083 * 6.62612 * 11 5 4
13 13 O 1.21350 * 120.00138 * 351.76836 * 12 11 5
14 14 C 1.49447 * 120.00141 * 171.76744 * 12 11 5
15 15 O 1.21353 * 120.00317 * 353.28555 * 14 12 11
16 16 N 1.34786 * 120.00351 * 173.27843 * 14 12 11
17 17 C 1.46491 * 120.00254 * 175.26582 * 16 14 12
18 18 C 1.53002 * 109.47098 * 184.99096 * 17 16 14
19 19 C 1.50701 * 115.54953 * 39.57065 * 18 17 16
20 20 H 1.07993 * 120.00020 * 271.45953 * 19 18 17
21 21 C 1.37874 * 119.99840 * 91.46336 * 19 18 17
22 22 N 1.31514 * 120.00200 * 182.19366 * 21 19 18
23 23 Si 1.86805 * 120.00058 * 2.19156 * 21 19 18
24 24 H 1.48497 * 109.46998 * 93.34650 * 23 21 19
25 25 H 1.48504 * 109.47071 * 213.34471 * 23 21 19
26 26 H 1.48501 * 109.47248 * 333.34169 * 23 21 19
27 27 C 1.52997 * 117.49717 * 253.86223 * 18 17 16
28 28 C 1.52998 * 117.49621 * 185.24067 * 18 17 16
29 29 H 1.09002 * 109.46670 * 60.00361 * 1 2 3
30 30 H 1.08998 * 109.47430 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47672 * 300.00669 * 1 2 3
32 32 H 1.08998 * 109.47672 * 239.99331 * 2 1 3
33 33 H 1.09002 * 109.46670 * 119.99639 * 2 1 3
34 34 H 1.09004 * 109.46696 * 59.99670 * 4 3 2
35 35 H 1.08998 * 109.47253 * 299.99696 * 4 3 2
36 36 H 1.09004 * 109.63498 * 54.56366 * 7 5 4
37 37 H 1.08999 * 109.45945 * 294.43514 * 7 5 4
38 38 H 1.08995 * 109.46205 * 178.49176 * 8 7 5
39 39 H 1.09002 * 109.45053 * 58.52237 * 8 7 5
40 40 H 1.08999 * 109.49716 * 301.41174 * 9 8 7
41 41 H 1.09001 * 109.52057 * 181.32976 * 9 8 7
42 42 H 1.08993 * 109.58907 * 185.58028 * 10 9 8
43 43 H 1.09000 * 109.70634 * 65.21644 * 10 9 8
44 44 H 0.97005 * 119.99329 * 355.00076 * 16 14 12
45 45 H 1.09001 * 109.47386 * 304.99306 * 17 16 14
46 46 H 1.09002 * 109.47231 * 64.98876 * 17 16 14
47 47 H 0.96998 * 120.00323 * 180.02562 * 22 21 19
48 48 H 1.08997 * 117.49967 * 0.02562 * 27 18 17
49 49 H 1.09006 * 117.49935 * 145.02388 * 27 18 17
50 50 H 1.09001 * 117.49670 * 214.97878 * 28 18 17
51 51 H 1.09000 * 117.50247 * 359.97438 * 28 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4309 1.4601 0.0006
5 6 3.8254 2.9383 -0.0001
6 1 3.3009 3.4589 0.8011
7 6 5.3426 3.0685 0.2027
8 6 5.7455 4.5385 0.0650
9 6 5.4038 5.0332 -1.3424
10 6 3.8921 4.9233 -1.5650
11 7 3.4732 3.5416 -1.2927
12 6 2.7744 2.8427 -2.2090
13 8 2.5587 1.6612 -2.0358
14 6 2.2650 3.5229 -3.4383
15 8 2.3733 4.7259 -3.5553
16 7 1.6854 2.8002 -4.4174
17 6 1.0935 3.4761 -5.5744
18 6 0.3992 2.4455 -6.4670
19 6 -0.3507 1.3578 -5.7419
20 1 0.1591 0.4506 -5.4533
21 6 -1.6877 1.5210 -5.4472
22 7 -2.3315 0.5907 -4.7767
23 14 -2.5846 3.0634 -6.0003
24 1 -3.2325 2.8153 -7.3132
25 1 -3.6197 3.4207 -4.9971
26 1 -1.6147 4.1804 -6.1300
27 6 1.0854 2.0745 -7.7832
28 6 -0.1784 2.9368 -7.7958
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5139 0.8899
32 1 1.8934 -0.5139 -0.8899
33 1 1.8932 -0.5138 0.8901
34 1 3.8340 0.9763 -0.8892
35 1 3.8333 0.9768 0.8908
36 1 5.8647 2.4762 -0.5488
37 1 5.6081 2.7103 1.1973
38 1 6.8175 4.6387 0.2347
39 1 5.2042 5.1337 0.8004
40 1 5.9253 4.4224 -2.0793
41 1 5.7124 6.0733 -1.4479
42 1 3.6551 5.1802 -2.5973
43 1 3.3710 5.6027 -0.8904
44 1 1.6638 1.8322 -4.3576
45 1 0.3642 4.2105 -5.2323
46 1 1.8769 3.9790 -6.1415
47 1 -3.2722 0.7053 -4.5696
48 1 2.0316 2.5643 -8.0130
49 1 0.9946 1.0434 -8.1250
50 1 -1.1007 2.4730 -8.1458
51 1 -0.0642 3.9943 -8.0340
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001325605001.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:39:57
Heat of formation + Delta-G solvation = -82.641282 kcal
Electronic energy + Delta-G solvation = -31760.176600 eV
Core-core repulsion = 27660.942224 eV
Total energy + Delta-G solvation = -4099.234375 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-42.10587 -40.28576 -38.83892 -38.43788 -38.23651 -35.24184 -34.23155 -33.67684
-33.43215 -31.56500 -28.99379 -27.86807 -27.32074 -25.61050 -24.61926 -23.61615
-23.41110 -22.78931 -21.60724 -21.27631 -20.38001 -18.62134 -18.21151 -17.77586
-17.57080 -17.24680 -17.02280 -16.75576 -16.56798 -15.93775 -15.75263 -15.56622
-15.34724 -15.00441 -14.81431 -14.70608 -14.60059 -14.23650 -14.12992 -14.02410
-13.83800 -13.66232 -13.35208 -13.11639 -12.96740 -12.72705 -12.45054 -12.34033
-12.17296 -12.07884 -12.00650 -11.90380 -11.78914 -11.56586 -11.51816 -11.18258
-11.01144 -10.63776 -10.50713 -10.36265 -9.96156 -9.79408 -9.57501 -8.29215
-6.36698 0.49029 1.31786 1.38633 1.41111 1.48528 2.24974 2.35656
2.57751 2.83675 3.05236 3.18874 3.49581 3.77463 3.94014 4.00202
4.01709 4.15017 4.17714 4.25573 4.27111 4.32641 4.37562 4.38350
4.47027 4.52435 4.55604 4.57184 4.72756 4.78305 4.85923 4.87026
4.90699 4.94931 4.98198 5.05026 5.07581 5.07718 5.16949 5.18482
5.23667 5.25637 5.43827 5.46246 5.48652 5.63786 5.70390 6.10817
6.27404 6.41049 6.46423 6.72074 6.86718 7.09087 7.33997 8.85011
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.012109 B = 0.004122 C = 0.003371
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2311.742796 B = 6791.520527 C = 8305.284610
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.075 3.925
3 O -0.397 6.397
4 C 0.067 3.933
5 C 0.143 3.857
6 H 0.084 0.916
7 C -0.118 4.118
8 C -0.115 4.115
9 C -0.129 4.129
10 C 0.065 3.935
11 N -0.578 5.578
12 C 0.502 3.498
13 O -0.508 6.508
14 C 0.495 3.505
15 O -0.545 6.545
16 N -0.667 5.667
17 C 0.160 3.840
18 C -0.045 4.045
19 C -0.481 4.481
20 H 0.041 0.959
21 C 0.029 3.971
22 N -0.939 5.939
23 Si 0.931 3.069
24 H -0.268 1.268
25 H -0.308 1.308
26 H -0.234 1.234
27 C -0.156 4.156
28 C -0.188 4.188
29 H 0.027 0.973
30 H 0.082 0.918
31 H 0.064 0.936
32 H 0.032 0.968
33 H 0.062 0.938
34 H 0.057 0.943
35 H 0.064 0.936
36 H 0.065 0.935
37 H 0.101 0.899
38 H 0.087 0.913
39 H 0.072 0.928
40 H 0.058 0.942
41 H 0.094 0.906
42 H 0.124 0.876
43 H 0.068 0.932
44 H 0.414 0.586
45 H 0.049 0.951
46 H 0.078 0.922
47 H 0.263 0.737
48 H 0.107 0.893
49 H 0.081 0.919
50 H 0.076 0.924
51 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.201 7.294 9.723 21.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.001 4.001
3 O -0.317 6.317
4 C -0.009 4.009
5 C 0.041 3.959
6 H 0.102 0.898
7 C -0.156 4.156
8 C -0.153 4.153
9 C -0.167 4.167
10 C -0.056 4.056
11 N -0.313 5.313
12 C 0.284 3.716
13 O -0.383 6.383
14 C 0.277 3.723
15 O -0.426 6.426
16 N -0.317 5.317
17 C 0.036 3.964
18 C -0.046 4.046
19 C -0.519 4.519
20 H 0.059 0.941
21 C -0.170 4.170
22 N -0.578 5.578
23 Si 0.757 3.243
24 H -0.194 1.194
25 H -0.236 1.236
26 H -0.156 1.156
27 C -0.193 4.193
28 C -0.226 4.226
29 H 0.046 0.954
30 H 0.100 0.900
31 H 0.083 0.917
32 H 0.050 0.950
33 H 0.081 0.919
34 H 0.075 0.925
35 H 0.082 0.918
36 H 0.084 0.916
37 H 0.119 0.881
38 H 0.106 0.894
39 H 0.091 0.909
40 H 0.077 0.923
41 H 0.112 0.888
42 H 0.141 0.859
43 H 0.087 0.913
44 H 0.251 0.749
45 H 0.067 0.933
46 H 0.096 0.904
47 H 0.072 0.928
48 H 0.126 0.874
49 H 0.100 0.900
50 H 0.095 0.905
51 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 16.846 7.583 9.787 20.907
hybrid contribution -1.269 -0.513 -0.201 1.383
sum 15.577 7.071 9.586 19.610
Atomic orbital electron populations
1.21664 0.94679 1.02484 1.01316 1.22213 0.94736 0.83732 0.99451
1.87838 1.21736 1.26974 1.95128 1.22637 0.82205 0.95676 1.00386
1.21685 0.97373 0.92704 0.84173 0.89822 1.21953 0.91292 0.98610
1.03776 1.21534 1.02589 0.94614 0.96526 1.21923 0.93877 1.02906
0.97962 1.22902 0.96078 0.80054 1.06558 1.47926 1.52450 1.15569
1.15377 1.19974 0.80100 0.86884 0.84680 1.90766 1.55940 1.15415
1.76182 1.20534 0.79857 0.87224 0.84718 1.90401 1.57704 1.14544
1.79960 1.45846 1.53754 1.12041 1.20029 1.21065 0.95814 0.93735
0.85743 1.19509 1.01064 0.96906 0.87145 1.20243 0.94074 1.01244
1.36312 0.94105 1.25732 0.98456 0.98625 0.94155 1.70031 1.10489
1.36279 1.40978 0.86042 0.78622 0.82150 0.77495 1.19385 1.23645
1.15644 1.22993 0.95557 0.99801 1.00991 1.22987 0.97876 0.99821
1.01908 0.95416 0.89955 0.91699 0.94971 0.91948 0.92535 0.91799
0.91632 0.88065 0.89397 0.90927 0.92296 0.88805 0.85924 0.91329
0.74892 0.93283 0.90390 0.92802 0.87450 0.90002 0.90509 0.87715
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.78 10.28 71.98 0.74 -4.04 16
2 C 0.08 2.39 6.21 71.98 0.45 2.83 16
3 O -0.40 -13.65 7.99 -124.97 -1.00 -14.65 16
4 C 0.07 1.81 4.51 71.98 0.32 2.13 16
5 C 0.14 3.31 3.19 45.12 0.14 3.45 16
6 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
7 C -0.12 -1.80 5.39 30.82 0.17 -1.64 16
8 C -0.12 -1.47 5.88 30.62 0.18 -1.29 16
9 C -0.13 -2.13 6.08 30.67 0.19 -1.94 16
10 C 0.06 1.56 6.00 86.36 0.52 2.08 16
11 N -0.58 -16.43 2.97 -795.80 -2.36 -18.80 16
12 C 0.50 18.09 7.43 87.27 0.65 18.74 16
13 O -0.51 -20.16 10.09 20.77 0.21 -19.95 16
14 C 0.49 19.13 7.74 87.27 0.68 19.81 16
15 O -0.54 -21.00 13.17 -3.25 -0.04 -21.05 16
16 N -0.67 -27.36 5.27 -464.41 -2.45 -29.80 16
17 C 0.16 6.40 5.69 86.38 0.49 6.89 16
18 C -0.05 -1.93 1.19 -52.93 -0.06 -1.99 16
19 C -0.48 -25.85 8.14 25.60 0.21 -25.64 16
20 H 0.04 2.46 8.03 -2.91 -0.02 2.43 16
21 C 0.03 1.65 5.47 84.65 0.46 2.11 16
22 N -0.94 -57.87 13.96 21.45 0.30 -57.57 16
23 Si 0.93 44.28 24.87 68.60 1.71 45.99 16
24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16
25 H -0.31 -15.23 7.11 99.48 0.71 -14.52 16
26 H -0.23 -10.13 5.57 99.48 0.55 -9.58 16
27 C -0.16 -5.60 9.88 30.59 0.30 -5.29 16
28 C -0.19 -7.12 7.15 30.59 0.22 -6.90 16
29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16
30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16
31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
32 H 0.03 1.13 7.83 -2.39 -0.02 1.11 16
33 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
34 H 0.06 1.74 6.27 -2.39 -0.01 1.72 16
35 H 0.06 1.34 8.13 -2.39 -0.02 1.32 16
36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16
39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
42 H 0.12 3.56 4.27 -51.18 -0.22 3.34 16
43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
44 H 0.41 18.23 7.04 -92.70 -0.65 17.57 16
45 H 0.05 2.10 7.23 -2.39 -0.02 2.09 16
46 H 0.08 2.71 7.94 -2.39 -0.02 2.69 16
47 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16
48 H 0.11 3.16 8.08 -2.39 -0.02 3.14 16
49 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16
50 H 0.08 3.12 6.56 -2.39 -0.02 3.10 16
51 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16
Total: -1.00 -68.08 392.03 1.93 -66.15
By element:
Atomic # 1 Polarization: 40.47 SS G_CDS: -0.09 Total: 40.37 kcal
Atomic # 6 Polarization: 3.64 SS G_CDS: 5.65 Total: 9.29 kcal
Atomic # 7 Polarization: -101.66 SS G_CDS: -4.51 Total: -106.16 kcal
Atomic # 8 Polarization: -54.81 SS G_CDS: -0.83 Total: -55.65 kcal
Atomic # 14 Polarization: 44.28 SS G_CDS: 1.71 Total: 45.99 kcal
Total: -68.08 1.93 -66.15 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325605001.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.489 kcal
(2) G-P(sol) polarization free energy of solvation -68.078 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.567 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds