Wall clock time and date at job start Tue Mar 31 2020 20:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46943 * 2 1 4 4 C 1.46499 * 120.00024 * 264.60671 * 3 2 1 5 5 C 1.52992 * 109.47491 * 263.35492 * 4 3 2 6 6 H 1.09004 * 110.43386 * 300.92505 * 5 4 3 7 7 C 1.54820 * 110.48881 * 178.38252 * 5 4 3 8 8 C 1.55222 * 101.98850 * 220.51695 * 7 5 4 9 9 O 1.44392 * 103.56409 * 36.87669 * 8 7 5 10 10 C 1.43743 * 106.97764 * 320.01399 * 9 8 7 11 11 C 1.34776 * 120.00174 * 84.61562 * 3 2 1 12 12 O 1.21345 * 120.00281 * 185.21733 * 11 3 2 13 13 C 1.49453 * 119.99631 * 5.21277 * 11 3 2 14 14 O 1.21351 * 120.00088 * 272.49539 * 13 11 3 15 15 N 1.34781 * 119.99755 * 92.50247 * 13 11 3 16 16 C 1.46926 * 120.63107 * 354.84014 * 15 13 11 17 17 C 1.53191 * 108.77488 * 233.63199 * 16 15 13 18 18 C 1.53042 * 109.34088 * 305.38257 * 17 16 15 19 19 C 1.53038 * 109.53806 * 61.31516 * 18 17 16 20 20 H 1.08993 * 109.50285 * 58.65523 * 19 18 17 21 21 C 1.50705 * 109.49706 * 178.71790 * 19 18 17 22 22 H 1.07999 * 119.99985 * 359.93796 * 21 19 18 23 23 C 1.37873 * 120.00102 * 179.97438 * 21 19 18 24 24 N 1.31513 * 120.00069 * 179.97438 * 23 21 19 25 25 Si 1.86800 * 120.00055 * 0.02562 * 23 21 19 26 26 H 1.48500 * 109.47367 * 269.99560 * 25 23 21 27 27 H 1.48503 * 109.47223 * 29.99350 * 25 23 21 28 28 H 1.48506 * 109.47104 * 149.99332 * 25 23 21 29 29 C 1.46930 * 120.62943 * 174.86410 * 15 13 11 30 30 H 1.09004 * 109.47028 * 59.99901 * 1 2 3 31 31 H 1.08993 * 109.47204 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46997 * 300.00349 * 1 2 3 33 33 H 1.08999 * 109.46997 * 239.99651 * 2 1 3 34 34 H 1.09000 * 109.46982 * 119.99590 * 2 1 3 35 35 H 1.09007 * 109.46812 * 23.35771 * 4 3 2 36 36 H 1.09001 * 109.47104 * 143.34981 * 4 3 2 37 37 H 1.08998 * 110.90349 * 338.63768 * 7 5 4 38 38 H 1.09004 * 110.90718 * 102.24183 * 7 5 4 39 39 H 1.08996 * 110.52013 * 278.38596 * 8 7 5 40 40 H 1.08991 * 110.78071 * 155.49518 * 8 7 5 41 41 H 1.08997 * 109.87617 * 267.08806 * 10 9 8 42 42 H 1.08994 * 110.00126 * 146.00305 * 10 9 8 43 43 H 1.08999 * 109.58802 * 353.41634 * 16 15 13 44 44 H 1.08998 * 109.58836 * 113.84546 * 16 15 13 45 45 H 1.09002 * 109.49756 * 65.31381 * 17 16 15 46 46 H 1.08998 * 109.50267 * 185.37933 * 17 16 15 47 47 H 1.08997 * 109.43323 * 301.31223 * 18 17 16 48 48 H 1.09001 * 109.48952 * 181.35103 * 18 17 16 49 49 H 0.97000 * 120.00179 * 179.97438 * 24 23 21 50 50 H 1.09005 * 109.58619 * 6.57800 * 29 15 13 51 51 H 1.08998 * 109.58216 * 246.15761 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3749 2.0321 -1.2631 5 6 3.8846 1.9222 -1.4851 6 1 4.4253 2.3921 -0.6635 7 6 4.2823 2.5678 -2.8349 8 6 5.3406 1.5672 -3.3716 9 8 4.8311 0.2811 -2.9578 10 6 4.3023 0.4461 -1.6314 11 6 2.1397 2.0531 1.1620 12 8 2.4530 3.2254 1.1552 13 6 1.8882 1.3543 2.4590 14 8 0.7638 1.3024 2.9122 15 7 2.9105 0.7818 3.1252 16 6 4.2561 0.7375 2.5369 17 6 4.7483 -0.7132 2.5404 18 6 4.6652 -1.2731 3.9623 19 6 3.2099 -1.2550 4.4353 20 1 2.5987 -1.8479 3.7549 21 6 3.1249 -1.8356 5.8234 22 1 4.0191 -2.1840 6.3187 23 6 1.9054 -1.9229 6.4606 24 7 1.8311 -2.4300 7.6718 25 14 0.3584 -1.3219 5.6033 26 1 0.1418 0.1125 5.9208 27 1 0.5104 -1.4864 4.1352 28 1 -0.8069 -2.1142 6.0721 29 6 2.7003 0.1896 4.4533 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8503 1.5435 -2.0843 36 1 2.0890 3.0832 -1.2236 37 1 3.4254 2.6246 -3.5062 38 1 4.7197 3.5542 -2.6804 39 1 6.3127 1.7590 -2.9174 40 1 5.4083 1.6216 -4.4580 41 1 5.0675 0.2027 -0.8944 42 1 3.4354 -0.1998 -1.4926 43 1 4.2195 1.1084 1.5126 44 1 4.9335 1.3546 3.1272 45 1 4.1230 -1.3111 1.8774 46 1 5.7815 -0.7477 2.1951 47 1 5.2715 -0.6604 4.6293 48 1 5.0374 -2.2976 3.9720 49 1 0.9732 -2.4911 8.1203 50 1 1.6371 0.1991 4.6935 51 1 3.2507 0.7621 5.1998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327646791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:12 Heat of formation + Delta-G solvation = -109.021562 kcal Electronic energy + Delta-G solvation = -32348.337710 eV Core-core repulsion = 28247.959400 eV Total energy + Delta-G solvation = -4100.378310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08807 -39.77957 -38.69492 -37.09490 -36.43027 -33.55896 -33.34357 -32.10049 -30.74972 -30.70395 -29.63516 -27.17664 -25.48084 -25.31685 -24.01146 -22.92256 -22.25870 -22.00897 -20.89813 -19.51000 -18.61702 -17.75480 -17.03965 -16.90340 -16.81984 -16.46592 -16.30408 -15.43559 -15.21047 -14.76250 -14.52398 -14.27733 -14.19364 -14.07551 -13.83962 -13.55710 -13.28120 -13.19928 -12.99565 -12.83610 -12.71500 -12.59641 -12.30591 -12.22599 -11.96895 -11.70503 -11.51829 -11.46763 -11.30694 -11.18597 -11.12713 -10.89667 -10.71106 -10.50911 -10.20238 -9.99330 -9.85499 -9.56364 -9.29995 -9.16599 -9.02466 -8.68750 -8.30146 -6.16810 -4.19122 2.09261 2.22539 2.71502 3.31149 3.33065 3.42354 3.49159 3.60118 4.13946 4.18691 4.31642 4.35402 4.47050 4.62275 4.78700 4.85819 4.89342 4.95399 4.99914 5.14218 5.14615 5.18328 5.25714 5.32120 5.35214 5.38446 5.45921 5.46582 5.52942 5.65841 5.66856 5.69235 5.74033 5.85454 5.96910 6.01689 6.08574 6.19534 6.26632 6.38804 6.48650 6.52918 6.60702 6.64733 6.89408 7.03058 7.30593 7.50748 7.62297 7.69619 8.08714 8.41348 8.86426 9.43994 10.95049 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.003871 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.606479 B = 7230.968387 C = 7905.310349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 N -0.602 5.602 4 C 0.124 3.876 5 C -0.141 4.141 6 H 0.090 0.910 7 C -0.146 4.146 8 C 0.046 3.954 9 O -0.378 6.378 10 C 0.047 3.953 11 C 0.522 3.478 12 O -0.514 6.514 13 C 0.506 3.494 14 O -0.516 6.516 15 N -0.588 5.588 16 C 0.108 3.892 17 C -0.134 4.134 18 C -0.101 4.101 19 C 0.007 3.993 20 H 0.032 0.968 21 C -0.517 4.517 22 H 0.079 0.921 23 C 0.074 3.926 24 N -0.893 5.893 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.262 1.262 28 H -0.294 1.294 29 C 0.100 3.900 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.266 0.734 50 H 0.081 0.919 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 7.160 -22.743 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 N -0.337 5.337 4 C 0.002 3.998 5 C -0.161 4.161 6 H 0.108 0.892 7 C -0.184 4.184 8 C -0.030 4.030 9 O -0.297 6.297 10 C -0.030 4.030 11 C 0.306 3.694 12 O -0.388 6.388 13 C 0.287 3.713 14 O -0.392 6.392 15 N -0.322 5.322 16 C -0.015 4.015 17 C -0.173 4.173 18 C -0.139 4.139 19 C -0.012 4.012 20 H 0.050 0.950 21 C -0.555 4.555 22 H 0.097 0.903 23 C -0.129 4.129 24 N -0.530 5.530 25 Si 0.707 3.293 26 H -0.200 1.200 27 H -0.187 1.187 28 H -0.222 1.222 29 C -0.020 4.020 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.099 0.901 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.883 7.519 -22.431 24.157 hybrid contribution -0.950 0.597 -0.099 1.126 sum 3.933 8.115 -22.531 24.269 Atomic orbital electron populations 1.22260 0.94809 1.03087 1.03291 1.21872 0.95662 0.81289 1.03878 1.48107 1.64855 1.14716 1.06019 1.21556 0.93607 0.99747 0.84878 1.23002 0.97414 0.96563 0.99130 0.89195 1.23165 0.99858 0.99665 0.95726 1.23586 0.96406 0.82564 1.00478 1.88885 1.79000 1.30535 1.31240 1.23392 0.98888 0.95758 0.84937 1.20553 0.76620 0.87273 0.85003 1.90763 1.46142 1.15102 1.86775 1.20129 0.85889 0.79558 0.85707 1.90797 1.21734 1.58302 1.68339 1.48510 1.08575 1.54904 1.20181 1.21781 0.83518 0.98541 0.97683 1.21992 1.00593 0.94668 0.99998 1.21456 0.98736 1.00605 0.93088 1.19484 0.92880 0.90527 0.98355 0.94982 1.20929 0.95504 1.40845 0.98263 0.90315 1.25049 0.98913 0.94339 0.94625 1.69881 1.25812 1.44615 1.12727 0.87023 0.82834 0.78703 0.80774 1.19966 1.18671 1.22151 1.22833 1.02664 0.96687 0.79824 0.92297 0.91004 0.90963 0.89134 0.89851 0.89459 0.89390 0.90129 0.89790 0.92129 0.88911 0.92060 0.89429 0.91367 0.90755 0.91895 0.91230 0.92288 0.91846 0.92409 0.90103 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 10.20 37.16 0.38 -1.63 16 2 C 0.10 1.04 5.34 -4.04 -0.02 1.02 16 3 N -0.60 -7.12 2.31 -174.20 -0.40 -7.53 16 4 C 0.12 1.13 4.66 -4.05 -0.02 1.11 16 5 C -0.14 -1.17 3.26 -89.09 -0.29 -1.46 16 6 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 7 C -0.15 -0.94 6.73 -24.60 -0.17 -1.11 16 8 C 0.05 0.32 7.72 38.33 0.30 0.62 16 9 O -0.38 -3.72 11.52 -35.23 -0.41 -4.12 16 10 C 0.05 0.41 7.16 37.73 0.27 0.68 16 11 C 0.52 8.30 5.38 -11.58 -0.06 8.23 16 12 O -0.51 -9.15 16.76 5.50 0.09 -9.06 16 13 C 0.51 9.57 5.66 -11.58 -0.07 9.50 16 14 O -0.52 -11.55 15.39 5.50 0.08 -11.47 16 15 N -0.59 -10.68 2.97 -173.27 -0.52 -11.19 16 16 C 0.11 1.51 6.32 -3.71 -0.02 1.49 16 17 C -0.13 -1.80 6.08 -26.61 -0.16 -1.96 16 18 C -0.10 -1.76 5.11 -26.69 -0.14 -1.90 16 19 C 0.01 0.16 1.84 -91.65 -0.17 -0.01 16 20 H 0.03 0.73 7.20 -51.93 -0.37 0.36 16 21 C -0.52 -13.78 9.14 -34.44 -0.31 -14.09 16 22 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 23 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 24 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 25 Si 0.88 22.42 24.32 -169.99 -4.13 18.29 16 26 H -0.27 -7.12 6.92 56.52 0.39 -6.73 16 27 H -0.26 -6.52 6.53 56.52 0.37 -6.15 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 29 C 0.10 2.15 5.12 -3.71 -0.02 2.13 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.07 6.94 -51.93 -0.36 0.71 16 33 H 0.09 0.72 5.87 -51.93 -0.31 0.42 16 34 H 0.08 1.07 6.99 -51.93 -0.36 0.71 16 35 H 0.09 0.62 8.02 -51.92 -0.42 0.21 16 36 H 0.09 0.88 7.56 -51.93 -0.39 0.49 16 37 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.74 4.76 -51.93 -0.25 0.49 16 43 H 0.07 0.84 6.37 -51.93 -0.33 0.51 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.08 1.97 2.32 -51.93 -0.12 1.85 16 51 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 389.01 15.07 5.86 5.86 Total: -1.00 -33.30 389.01 -7.66 -40.96 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.41 Total: -0.37 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.60 Total: 4.60 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.14 Total: -44.70 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.23 Total: -24.64 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.13 Total: 18.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.30 -7.66 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.064 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds