Wall clock time and date at job start Tue Mar 31 2020 20:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46943 * 2 1 4 4 C 1.46499 * 120.00024 * 264.60671 * 3 2 1 5 5 C 1.52992 * 109.47491 * 263.35492 * 4 3 2 6 6 H 1.09004 * 110.43386 * 300.92505 * 5 4 3 7 7 C 1.54820 * 110.48881 * 178.38252 * 5 4 3 8 8 C 1.55222 * 101.98850 * 220.51695 * 7 5 4 9 9 O 1.44392 * 103.56409 * 36.87669 * 8 7 5 10 10 C 1.43743 * 106.97764 * 320.01399 * 9 8 7 11 11 C 1.34776 * 120.00174 * 84.61562 * 3 2 1 12 12 O 1.21345 * 120.00281 * 185.21733 * 11 3 2 13 13 C 1.49453 * 119.99631 * 5.21277 * 11 3 2 14 14 O 1.21351 * 120.00088 * 272.49539 * 13 11 3 15 15 N 1.34781 * 119.99755 * 92.50247 * 13 11 3 16 16 C 1.46926 * 120.63107 * 354.84014 * 15 13 11 17 17 C 1.53191 * 108.77488 * 233.63199 * 16 15 13 18 18 C 1.53042 * 109.34088 * 305.38257 * 17 16 15 19 19 C 1.53038 * 109.53806 * 61.31516 * 18 17 16 20 20 H 1.08993 * 109.50285 * 58.65523 * 19 18 17 21 21 C 1.50705 * 109.49706 * 178.71790 * 19 18 17 22 22 H 1.07999 * 119.99985 * 359.93796 * 21 19 18 23 23 C 1.37873 * 120.00102 * 179.97438 * 21 19 18 24 24 N 1.31513 * 120.00069 * 179.97438 * 23 21 19 25 25 Si 1.86800 * 120.00055 * 0.02562 * 23 21 19 26 26 H 1.48500 * 109.47367 * 269.99560 * 25 23 21 27 27 H 1.48503 * 109.47223 * 29.99350 * 25 23 21 28 28 H 1.48506 * 109.47104 * 149.99332 * 25 23 21 29 29 C 1.46930 * 120.62943 * 174.86410 * 15 13 11 30 30 H 1.09004 * 109.47028 * 59.99901 * 1 2 3 31 31 H 1.08993 * 109.47204 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46997 * 300.00349 * 1 2 3 33 33 H 1.08999 * 109.46997 * 239.99651 * 2 1 3 34 34 H 1.09000 * 109.46982 * 119.99590 * 2 1 3 35 35 H 1.09007 * 109.46812 * 23.35771 * 4 3 2 36 36 H 1.09001 * 109.47104 * 143.34981 * 4 3 2 37 37 H 1.08998 * 110.90349 * 338.63768 * 7 5 4 38 38 H 1.09004 * 110.90718 * 102.24183 * 7 5 4 39 39 H 1.08996 * 110.52013 * 278.38596 * 8 7 5 40 40 H 1.08991 * 110.78071 * 155.49518 * 8 7 5 41 41 H 1.08997 * 109.87617 * 267.08806 * 10 9 8 42 42 H 1.08994 * 110.00126 * 146.00305 * 10 9 8 43 43 H 1.08999 * 109.58802 * 353.41634 * 16 15 13 44 44 H 1.08998 * 109.58836 * 113.84546 * 16 15 13 45 45 H 1.09002 * 109.49756 * 65.31381 * 17 16 15 46 46 H 1.08998 * 109.50267 * 185.37933 * 17 16 15 47 47 H 1.08997 * 109.43323 * 301.31223 * 18 17 16 48 48 H 1.09001 * 109.48952 * 181.35103 * 18 17 16 49 49 H 0.97000 * 120.00179 * 179.97438 * 24 23 21 50 50 H 1.09005 * 109.58619 * 6.57800 * 29 15 13 51 51 H 1.08998 * 109.58216 * 246.15761 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3749 2.0321 -1.2631 5 6 3.8846 1.9222 -1.4851 6 1 4.4253 2.3921 -0.6635 7 6 4.2823 2.5678 -2.8349 8 6 5.3406 1.5672 -3.3716 9 8 4.8311 0.2811 -2.9578 10 6 4.3023 0.4461 -1.6314 11 6 2.1397 2.0531 1.1620 12 8 2.4530 3.2254 1.1552 13 6 1.8882 1.3543 2.4590 14 8 0.7638 1.3024 2.9122 15 7 2.9105 0.7818 3.1252 16 6 4.2561 0.7375 2.5369 17 6 4.7483 -0.7132 2.5404 18 6 4.6652 -1.2731 3.9623 19 6 3.2099 -1.2550 4.4353 20 1 2.5987 -1.8479 3.7549 21 6 3.1249 -1.8356 5.8234 22 1 4.0191 -2.1840 6.3187 23 6 1.9054 -1.9229 6.4606 24 7 1.8311 -2.4300 7.6718 25 14 0.3584 -1.3219 5.6033 26 1 0.1418 0.1125 5.9208 27 1 0.5104 -1.4864 4.1352 28 1 -0.8069 -2.1142 6.0721 29 6 2.7003 0.1896 4.4533 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.8503 1.5435 -2.0843 36 1 2.0890 3.0832 -1.2236 37 1 3.4254 2.6246 -3.5062 38 1 4.7197 3.5542 -2.6804 39 1 6.3127 1.7590 -2.9174 40 1 5.4083 1.6216 -4.4580 41 1 5.0675 0.2027 -0.8944 42 1 3.4354 -0.1998 -1.4926 43 1 4.2195 1.1084 1.5126 44 1 4.9335 1.3546 3.1272 45 1 4.1230 -1.3111 1.8774 46 1 5.7815 -0.7477 2.1951 47 1 5.2715 -0.6604 4.6293 48 1 5.0374 -2.2976 3.9720 49 1 0.9732 -2.4911 8.1203 50 1 1.6371 0.1991 4.6935 51 1 3.2507 0.7621 5.1998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327646791.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:11 Heat of formation + Delta-G solvation = -132.109530 kcal Electronic energy + Delta-G solvation = -32349.338880 eV Core-core repulsion = 28247.959400 eV Total energy + Delta-G solvation = -4101.379479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.31751 -40.67687 -39.83389 -38.60043 -37.46543 -35.39654 -34.07686 -33.73174 -32.37403 -31.55413 -30.32778 -28.33015 -27.04383 -26.61706 -25.11628 -23.70740 -23.58065 -23.14863 -21.62282 -21.03873 -19.83147 -19.03893 -18.85179 -18.18752 -17.78899 -17.42086 -17.20673 -16.55983 -16.29193 -16.00275 -15.90760 -15.63597 -15.49318 -15.21851 -15.01411 -14.93094 -14.60612 -14.45249 -14.22998 -13.90023 -13.80867 -13.66894 -13.42984 -13.21270 -13.06103 -12.99499 -12.79469 -12.56672 -12.36879 -12.23879 -12.16744 -12.13243 -11.86068 -11.83764 -11.62246 -11.58529 -11.26462 -11.08362 -10.84456 -10.70218 -10.60509 -10.01453 -9.83814 -8.39000 -6.41267 0.84847 0.93121 1.22955 1.30745 1.36362 1.39526 2.12887 2.21041 2.95479 2.98173 3.05401 3.56792 3.64364 3.77529 3.83881 3.87382 3.98385 4.04618 4.12353 4.21800 4.23288 4.34125 4.36587 4.39468 4.40431 4.52136 4.58270 4.61862 4.65055 4.70876 4.75566 4.78524 4.88425 4.91044 4.91802 4.93927 5.01376 5.07399 5.15634 5.17418 5.19440 5.25617 5.30877 5.49945 5.59653 5.64746 5.82907 5.96055 6.06638 6.25201 6.53457 6.63225 6.69960 7.24442 8.76901 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016500 B = 0.003871 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.606479 B = 7230.968387 C = 7905.310349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 N -0.584 5.584 4 C 0.122 3.878 5 C -0.137 4.137 6 H 0.077 0.923 7 C -0.140 4.140 8 C 0.042 3.958 9 O -0.398 6.398 10 C 0.046 3.954 11 C 0.530 3.470 12 O -0.537 6.537 13 C 0.498 3.502 14 O -0.560 6.560 15 N -0.587 5.587 16 C 0.102 3.898 17 C -0.122 4.122 18 C -0.098 4.098 19 C 0.008 3.992 20 H 0.025 0.975 21 C -0.509 4.509 22 H 0.053 0.947 23 C 0.029 3.971 24 N -0.937 5.937 25 Si 0.931 3.069 26 H -0.287 1.287 27 H -0.255 1.255 28 H -0.294 1.294 29 C 0.106 3.894 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.032 0.968 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.110 0.890 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.267 0.733 50 H 0.052 0.948 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 7.598 -26.737 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.029 4.029 3 N -0.318 5.318 4 C 0.001 3.999 5 C -0.157 4.157 6 H 0.096 0.904 7 C -0.178 4.178 8 C -0.034 4.034 9 O -0.317 6.317 10 C -0.030 4.030 11 C 0.312 3.688 12 O -0.414 6.414 13 C 0.281 3.719 14 O -0.438 6.438 15 N -0.320 5.320 16 C -0.019 4.019 17 C -0.160 4.160 18 C -0.136 4.136 19 C -0.011 4.011 20 H 0.043 0.957 21 C -0.548 4.548 22 H 0.071 0.929 23 C -0.170 4.170 24 N -0.577 5.577 25 Si 0.760 3.240 26 H -0.214 1.214 27 H -0.180 1.180 28 H -0.222 1.222 29 C -0.016 4.016 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.051 0.949 33 H 0.148 0.852 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.125 0.875 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.128 0.872 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.070 0.930 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.227 7.940 -26.493 28.349 hybrid contribution -1.284 0.452 1.105 1.753 sum 4.944 8.391 -25.388 27.192 Atomic orbital electron populations 1.22240 0.95143 1.03562 1.02330 1.22045 0.95374 0.80633 1.04873 1.48131 1.63053 1.14921 1.05667 1.21835 0.94696 0.99521 0.83829 1.22927 0.96302 0.96696 0.99799 0.90436 1.23159 1.00183 0.99764 0.94656 1.23755 0.96577 0.81620 1.01486 1.88868 1.79266 1.32019 1.31575 1.23414 0.99054 0.95790 0.84780 1.19935 0.77159 0.86772 0.84897 1.90759 1.47963 1.15765 1.86914 1.20776 0.85231 0.79060 0.86786 1.90767 1.23511 1.59926 1.69626 1.48498 1.10282 1.54255 1.18934 1.22106 0.81360 0.99527 0.98873 1.21938 1.03261 0.93672 0.97131 1.21389 0.95127 1.01242 0.95838 1.19413 0.96184 0.90174 0.95352 0.95663 1.21295 0.94067 1.39313 1.00122 0.92926 1.25625 1.01323 0.94979 0.95036 1.69982 1.26408 1.47080 1.14244 0.86166 0.80354 0.77222 0.80250 1.21414 1.17965 1.22177 1.22368 1.00646 0.96691 0.81888 0.90183 0.89917 0.94897 0.85202 0.91704 0.86578 0.90051 0.88990 0.88956 0.91809 0.87465 0.92064 0.89034 0.89080 0.89575 0.91109 0.87159 0.92292 0.91706 0.92394 0.92995 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 10.20 71.98 0.73 -2.90 16 2 C 0.09 1.74 5.34 86.38 0.46 2.21 16 3 N -0.58 -12.29 2.31 -823.40 -1.90 -14.20 16 4 C 0.12 1.79 4.66 86.38 0.40 2.19 16 5 C -0.14 -1.80 3.26 -9.80 -0.03 -1.83 16 6 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 7 C -0.14 -1.28 6.73 31.98 0.22 -1.07 16 8 C 0.04 0.44 7.72 72.74 0.56 1.00 16 9 O -0.40 -6.41 11.52 -148.98 -1.72 -8.13 16 10 C 0.05 0.63 7.16 72.35 0.52 1.15 16 11 C 0.53 16.08 5.38 87.27 0.47 16.55 16 12 O -0.54 -18.47 16.76 -3.23 -0.05 -18.53 16 13 C 0.50 18.68 5.66 87.27 0.49 19.17 16 14 O -0.56 -25.58 15.39 -3.25 -0.05 -25.63 16 15 N -0.59 -20.78 2.97 -820.46 -2.44 -23.22 16 16 C 0.10 2.58 6.32 86.36 0.55 3.13 16 17 C -0.12 -2.83 6.08 30.67 0.19 -2.64 16 18 C -0.10 -3.24 5.11 30.62 0.16 -3.08 16 19 C 0.01 0.36 1.84 -11.46 -0.02 0.34 16 20 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 21 C -0.51 -27.72 9.14 25.60 0.23 -27.48 16 22 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 23 C 0.03 1.69 5.45 84.65 0.46 2.15 16 24 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 25 Si 0.93 48.20 24.32 68.60 1.67 49.87 16 26 H -0.29 -15.34 6.92 99.48 0.69 -14.65 16 27 H -0.26 -12.73 6.53 99.48 0.65 -12.08 16 28 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 29 C 0.11 4.58 5.12 86.36 0.44 5.02 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 0.96 6.94 -2.39 -0.02 0.94 16 33 H 0.13 1.47 5.87 -2.39 -0.01 1.46 16 34 H 0.06 1.52 6.99 -2.39 -0.02 1.50 16 35 H 0.12 1.10 8.02 -2.38 -0.02 1.08 16 36 H 0.08 1.38 7.56 -2.39 -0.02 1.37 16 37 H 0.09 0.66 7.87 -2.39 -0.02 0.64 16 38 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.09 1.13 4.76 -2.39 -0.01 1.12 16 43 H 0.09 1.92 6.37 -2.39 -0.02 1.91 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 50 H 0.05 2.58 2.32 -2.38 -0.01 2.57 16 51 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -76.23 389.01 2.48 -73.75 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.85 Total: 9.83 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.83 Total: 13.90 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -4.04 Total: -95.06 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -1.82 Total: -52.28 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.67 Total: 49.87 kcal Total: -76.23 2.48 -73.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646791.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.364 kcal (2) G-P(sol) polarization free energy of solvation -76.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds