Wall clock time and date at job start Tue Mar 31 2020 20:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47619 * 2 1 4 4 C 1.46501 * 119.99847 * 261.81720 * 3 2 1 5 5 C 1.53007 * 109.46817 * 269.99199 * 4 3 2 6 6 H 1.08991 * 110.80221 * 308.63088 * 5 4 3 7 7 C 1.54811 * 110.90720 * 184.99838 * 5 4 3 8 8 C 1.54091 * 104.18997 * 220.92396 * 7 5 4 9 9 O 1.43744 * 107.29512 * 357.97194 * 8 7 5 10 10 C 1.44376 * 106.97306 * 26.51318 * 9 8 7 11 11 C 1.34774 * 120.00080 * 81.80934 * 3 2 1 12 12 O 1.21350 * 120.00055 * 181.79699 * 11 3 2 13 13 C 1.49456 * 119.99942 * 1.79223 * 11 3 2 14 14 O 1.21352 * 119.99362 * 7.02302 * 13 11 3 15 15 N 1.34767 * 119.99949 * 187.01340 * 13 11 3 16 16 C 1.46927 * 120.63437 * 356.45379 * 15 13 11 17 17 C 1.53194 * 108.77999 * 126.40763 * 16 15 13 18 18 C 1.53045 * 109.30868 * 54.63579 * 17 16 15 19 19 C 1.53042 * 109.53721 * 298.63420 * 18 17 16 20 20 H 1.08998 * 109.49917 * 301.38195 * 19 18 17 21 21 C 1.50699 * 109.49422 * 181.31839 * 19 18 17 22 22 H 1.07994 * 120.00199 * 335.15364 * 21 19 18 23 23 C 1.37878 * 119.99872 * 155.15191 * 21 19 18 24 24 N 1.31517 * 119.99778 * 355.41934 * 23 21 19 25 25 Si 1.86802 * 120.00125 * 175.14605 * 23 21 19 26 26 H 1.48496 * 109.47085 * 59.99971 * 25 23 21 27 27 H 1.48502 * 109.47086 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47047 * 300.00058 * 25 23 21 29 29 C 1.46927 * 120.63071 * 176.46837 * 15 13 11 30 30 H 1.09000 * 109.47395 * 59.99670 * 1 2 3 31 31 H 1.08996 * 109.47733 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46761 * 300.00046 * 1 2 3 33 33 H 1.09005 * 109.46761 * 239.99954 * 2 1 3 34 34 H 1.09000 * 109.47395 * 120.00330 * 2 1 3 35 35 H 1.08997 * 109.47693 * 29.99240 * 4 3 2 36 36 H 1.09004 * 109.47163 * 149.99894 * 4 3 2 37 37 H 1.08998 * 110.48930 * 339.60317 * 7 5 4 38 38 H 1.09006 * 110.48446 * 102.11277 * 7 5 4 39 39 H 1.09006 * 109.88102 * 117.39722 * 8 7 5 40 40 H 1.08999 * 109.88010 * 238.39944 * 8 7 5 41 41 H 1.09007 * 110.62158 * 201.43534 * 10 9 8 42 42 H 1.09001 * 110.62065 * 78.44093 * 10 9 8 43 43 H 1.08998 * 109.58243 * 6.62076 * 16 15 13 44 44 H 1.09000 * 109.70066 * 246.27186 * 16 15 13 45 45 H 1.09003 * 109.49538 * 294.68484 * 17 16 15 46 46 H 1.08998 * 109.49840 * 174.58388 * 17 16 15 47 47 H 1.09000 * 109.45271 * 178.61373 * 18 17 16 48 48 H 1.08998 * 109.44978 * 58.64659 * 18 17 16 49 49 H 0.96997 * 120.00499 * 4.88048 * 24 23 21 50 50 H 1.08998 * 109.58732 * 113.80085 * 29 15 13 51 51 H 1.09007 * 109.58557 * 353.37886 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4329 2.0115 -1.2558 5 6 3.9234 1.7550 -1.4875 6 1 4.5050 2.0309 -0.6080 7 6 4.4257 2.5111 -2.7416 8 6 5.3657 1.5073 -3.4367 9 8 5.4164 0.3294 -2.6143 10 6 4.1761 0.2763 -1.8772 11 6 2.0863 2.0719 1.1553 12 8 2.4600 3.2265 1.1508 13 6 1.7013 1.4161 2.4418 14 8 1.4505 0.2290 2.4663 15 7 1.6329 2.1429 3.5747 16 6 2.0085 3.5633 3.5766 17 6 0.8520 4.3784 4.1640 18 6 0.4899 3.8221 5.5430 19 6 0.0344 2.3676 5.4046 20 1 -0.8237 2.3173 4.7344 21 6 -0.3526 1.8309 6.7586 22 1 0.0689 2.2660 7.6526 23 6 -1.2449 0.7843 6.8559 24 7 -1.8269 0.3137 5.7744 25 14 -1.6214 0.0297 8.5227 26 1 -2.1878 1.0687 9.4198 27 1 -2.6049 -1.0705 8.3573 28 1 -0.3710 -0.5085 9.1162 29 6 1.1816 1.5298 4.8313 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.8591 1.5896 -2.0809 36 1 2.2534 3.0852 -1.2000 37 1 3.5902 2.7659 -3.3936 38 1 4.9705 3.4099 -2.4524 39 1 4.9747 1.2546 -4.4223 40 1 6.3623 1.9381 -3.5327 41 1 4.2852 -0.3422 -0.9862 42 1 3.3700 -0.0974 -2.5086 43 1 2.2048 3.8907 2.5557 44 1 2.9020 3.7063 4.1843 45 1 -0.0134 4.3091 3.5050 46 1 1.1540 5.4213 4.2603 47 1 -0.3164 4.4158 5.9737 48 1 1.3630 3.8688 6.1939 49 1 -1.5764 0.6543 4.9015 50 1 2.0070 1.5050 5.5428 51 1 0.8323 0.5154 4.6383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327646792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:14 Heat of formation + Delta-G solvation = -98.287011 kcal Electronic energy + Delta-G solvation = -31397.974674 eV Core-core repulsion = 27298.061849 eV Total energy + Delta-G solvation = -4099.912825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02644 -39.74467 -38.47307 -37.38511 -36.15852 -33.56950 -33.23151 -31.81042 -30.65352 -29.77962 -29.61923 -26.98655 -25.38368 -24.68810 -23.80288 -22.79895 -22.18870 -21.78350 -20.96645 -19.79155 -18.78352 -17.32648 -17.03773 -16.82673 -16.36052 -16.18762 -15.87608 -15.66057 -15.27490 -14.86055 -14.35361 -14.11168 -13.98302 -13.79351 -13.70847 -13.49130 -13.35128 -13.22991 -12.85214 -12.64359 -12.52282 -12.30124 -12.17209 -12.00231 -11.74429 -11.65495 -11.36224 -11.23922 -11.21472 -11.01905 -10.91988 -10.83862 -10.54284 -10.14012 -10.10933 -10.01409 -9.80036 -9.29295 -9.07350 -8.90310 -8.47124 -8.30618 -8.03584 -6.39826 -4.13436 1.61221 2.42201 3.40422 3.42711 3.44140 3.57868 3.62565 3.63740 4.17751 4.32507 4.42821 4.50225 4.51906 4.70402 4.88464 4.91304 4.98222 5.15416 5.29507 5.31297 5.34409 5.38744 5.43958 5.46462 5.47860 5.53433 5.55943 5.60866 5.69810 5.79153 5.84996 5.97959 6.07114 6.18076 6.25362 6.29516 6.34536 6.47089 6.51944 6.55535 6.65637 6.74022 6.81941 6.91901 7.03114 7.31461 7.49029 7.72815 7.90179 8.14303 8.36245 8.38620 8.82289 9.59543 10.97829 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002852 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.770081 B = 9815.570192 C =10574.049918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.083 3.917 3 N -0.584 5.584 4 C 0.122 3.878 5 C -0.137 4.137 6 H 0.091 0.909 7 C -0.148 4.148 8 C 0.047 3.953 9 O -0.379 6.379 10 C 0.051 3.949 11 C 0.513 3.487 12 O -0.515 6.515 13 C 0.495 3.505 14 O -0.521 6.521 15 N -0.566 5.566 16 C 0.048 3.952 17 C -0.132 4.132 18 C -0.107 4.107 19 C 0.023 3.977 20 H 0.034 0.966 21 C -0.597 4.597 22 H 0.052 0.948 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 1.067 2.933 26 H -0.288 1.288 27 H -0.282 1.282 28 H -0.287 1.287 29 C 0.111 3.889 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.149 0.851 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.271 0.729 50 H 0.058 0.942 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 3.804 -18.034 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.038 4.038 3 N -0.316 5.316 4 C -0.001 4.001 5 C -0.157 4.157 6 H 0.110 0.890 7 C -0.186 4.186 8 C -0.030 4.030 9 O -0.298 6.298 10 C -0.025 4.025 11 C 0.297 3.703 12 O -0.393 6.393 13 C 0.277 3.723 14 O -0.400 6.400 15 N -0.297 5.297 16 C -0.073 4.073 17 C -0.170 4.170 18 C -0.144 4.144 19 C 0.004 3.996 20 H 0.052 0.948 21 C -0.635 4.635 22 H 0.070 0.930 23 C -0.183 4.183 24 N -0.538 5.538 25 Si 0.895 3.105 26 H -0.215 1.215 27 H -0.208 1.208 28 H -0.213 1.213 29 C -0.009 4.009 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.165 0.835 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.511 2.482 -17.241 19.847 hybrid contribution 0.750 1.396 -0.681 1.725 sum 10.262 3.878 -17.922 21.013 Atomic orbital electron populations 1.22076 0.95213 1.02721 1.01880 1.22367 0.95448 0.80883 1.05146 1.47961 1.62448 1.15076 1.06145 1.21543 0.93031 1.00109 0.85414 1.23169 0.97276 0.95964 0.99320 0.89021 1.22922 0.99887 0.99384 0.96448 1.23142 1.00316 0.85500 0.94052 1.88889 1.37780 1.44166 1.58919 1.23713 0.86682 0.96184 0.95923 1.20669 0.78063 0.85923 0.85604 1.90256 1.47353 1.16819 1.84850 1.19806 0.80536 0.87112 0.84867 1.90616 1.49768 1.14562 1.85068 1.48484 1.60859 1.11365 1.08977 1.23213 0.96884 0.79580 1.07669 1.21937 0.98129 0.98347 0.98584 1.21594 1.00047 0.98529 0.94265 1.19161 0.92800 0.90434 0.97216 0.94765 1.21851 1.30263 1.19912 0.91479 0.93009 1.25882 0.93050 0.94697 1.04719 1.70791 1.39842 1.43922 0.99248 0.83567 0.76431 0.76403 0.74071 1.21459 1.20753 1.21327 1.22591 0.98150 0.99474 0.80702 0.93388 0.91196 0.91896 0.91058 0.85836 0.89782 0.88987 0.90304 0.90045 0.92381 0.89884 0.88762 0.91983 0.83488 0.92327 0.92517 0.92007 0.92765 0.93310 0.91695 0.92350 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.75 37.16 0.36 -1.64 16 2 C 0.08 0.97 5.44 -4.04 -0.02 0.95 16 3 N -0.58 -7.17 2.46 -174.19 -0.43 -7.60 16 4 C 0.12 1.13 4.78 -4.04 -0.02 1.11 16 5 C -0.14 -1.23 3.34 -88.61 -0.30 -1.53 16 6 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.15 -1.03 6.60 -25.21 -0.17 -1.20 16 8 C 0.05 0.36 7.70 37.73 0.29 0.65 16 9 O -0.38 -4.05 11.52 -35.23 -0.41 -4.46 16 10 C 0.05 0.47 5.85 38.21 0.22 0.69 16 11 C 0.51 7.98 7.59 -11.58 -0.09 7.90 16 12 O -0.51 -8.28 12.59 5.50 0.07 -8.21 16 13 C 0.49 9.23 7.25 -11.59 -0.08 9.14 16 14 O -0.52 -10.46 11.58 5.50 0.06 -10.40 16 15 N -0.57 -11.10 2.97 -173.27 -0.51 -11.62 16 16 C 0.05 0.82 6.26 -3.71 -0.02 0.80 16 17 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 18 C -0.11 -2.19 5.14 -26.69 -0.14 -2.33 16 19 C 0.02 0.57 1.98 -91.65 -0.18 0.39 16 20 H 0.03 0.92 6.67 -51.93 -0.35 0.58 16 21 C -0.60 -16.18 8.32 -34.44 -0.29 -16.47 16 22 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 23 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 24 N -0.90 -26.85 13.63 55.43 0.76 -26.09 16 25 Si 1.07 24.75 29.91 -169.99 -5.08 19.67 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 29 C 0.11 2.53 5.69 -3.71 -0.02 2.51 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.00 7.02 -51.93 -0.36 0.64 16 33 H 0.07 0.63 6.62 -51.93 -0.34 0.28 16 34 H 0.12 1.76 5.29 -51.98 -0.27 1.48 16 35 H 0.08 0.60 7.91 -51.93 -0.41 0.19 16 36 H 0.09 0.91 7.40 -51.93 -0.38 0.53 16 37 H 0.08 0.43 7.86 -51.93 -0.41 0.03 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.06 0.48 7.58 -51.93 -0.39 0.08 16 43 H 0.15 2.47 3.74 -57.10 -0.21 2.26 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.27 8.13 6.66 -40.82 -0.27 7.86 16 50 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 51 H 0.09 2.19 7.03 -51.92 -0.36 1.82 16 LS Contribution 390.61 15.07 5.89 5.89 Total: -1.00 -30.83 390.61 -8.84 -39.68 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.48 Total: 4.11 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.71 Total: -0.97 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.19 Total: -45.30 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.27 Total: -23.07 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.83 -8.84 -39.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.609 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds