Wall clock time and date at job start Tue Mar 31 2020 20:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47619 * 2 1 4 4 C 1.46501 * 119.99847 * 261.81720 * 3 2 1 5 5 C 1.53007 * 109.46817 * 269.99199 * 4 3 2 6 6 H 1.08991 * 110.80221 * 308.63088 * 5 4 3 7 7 C 1.54811 * 110.90720 * 184.99838 * 5 4 3 8 8 C 1.54091 * 104.18997 * 220.92396 * 7 5 4 9 9 O 1.43744 * 107.29512 * 357.97194 * 8 7 5 10 10 C 1.44376 * 106.97306 * 26.51318 * 9 8 7 11 11 C 1.34774 * 120.00080 * 81.80934 * 3 2 1 12 12 O 1.21350 * 120.00055 * 181.79699 * 11 3 2 13 13 C 1.49456 * 119.99942 * 1.79223 * 11 3 2 14 14 O 1.21352 * 119.99362 * 7.02302 * 13 11 3 15 15 N 1.34767 * 119.99949 * 187.01340 * 13 11 3 16 16 C 1.46927 * 120.63437 * 356.45379 * 15 13 11 17 17 C 1.53194 * 108.77999 * 126.40763 * 16 15 13 18 18 C 1.53045 * 109.30868 * 54.63579 * 17 16 15 19 19 C 1.53042 * 109.53721 * 298.63420 * 18 17 16 20 20 H 1.08998 * 109.49917 * 301.38195 * 19 18 17 21 21 C 1.50699 * 109.49422 * 181.31839 * 19 18 17 22 22 H 1.07994 * 120.00199 * 335.15364 * 21 19 18 23 23 C 1.37878 * 119.99872 * 155.15191 * 21 19 18 24 24 N 1.31517 * 119.99778 * 355.41934 * 23 21 19 25 25 Si 1.86802 * 120.00125 * 175.14605 * 23 21 19 26 26 H 1.48496 * 109.47085 * 59.99971 * 25 23 21 27 27 H 1.48502 * 109.47086 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47047 * 300.00058 * 25 23 21 29 29 C 1.46927 * 120.63071 * 176.46837 * 15 13 11 30 30 H 1.09000 * 109.47395 * 59.99670 * 1 2 3 31 31 H 1.08996 * 109.47733 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46761 * 300.00046 * 1 2 3 33 33 H 1.09005 * 109.46761 * 239.99954 * 2 1 3 34 34 H 1.09000 * 109.47395 * 120.00330 * 2 1 3 35 35 H 1.08997 * 109.47693 * 29.99240 * 4 3 2 36 36 H 1.09004 * 109.47163 * 149.99894 * 4 3 2 37 37 H 1.08998 * 110.48930 * 339.60317 * 7 5 4 38 38 H 1.09006 * 110.48446 * 102.11277 * 7 5 4 39 39 H 1.09006 * 109.88102 * 117.39722 * 8 7 5 40 40 H 1.08999 * 109.88010 * 238.39944 * 8 7 5 41 41 H 1.09007 * 110.62158 * 201.43534 * 10 9 8 42 42 H 1.09001 * 110.62065 * 78.44093 * 10 9 8 43 43 H 1.08998 * 109.58243 * 6.62076 * 16 15 13 44 44 H 1.09000 * 109.70066 * 246.27186 * 16 15 13 45 45 H 1.09003 * 109.49538 * 294.68484 * 17 16 15 46 46 H 1.08998 * 109.49840 * 174.58388 * 17 16 15 47 47 H 1.09000 * 109.45271 * 178.61373 * 18 17 16 48 48 H 1.08998 * 109.44978 * 58.64659 * 18 17 16 49 49 H 0.96997 * 120.00499 * 4.88048 * 24 23 21 50 50 H 1.08998 * 109.58732 * 113.80085 * 29 15 13 51 51 H 1.09007 * 109.58557 * 353.37886 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4329 2.0115 -1.2558 5 6 3.9234 1.7550 -1.4875 6 1 4.5050 2.0309 -0.6080 7 6 4.4257 2.5111 -2.7416 8 6 5.3657 1.5073 -3.4367 9 8 5.4164 0.3294 -2.6143 10 6 4.1761 0.2763 -1.8772 11 6 2.0863 2.0719 1.1553 12 8 2.4600 3.2265 1.1508 13 6 1.7013 1.4161 2.4418 14 8 1.4505 0.2290 2.4663 15 7 1.6329 2.1429 3.5747 16 6 2.0085 3.5633 3.5766 17 6 0.8520 4.3784 4.1640 18 6 0.4899 3.8221 5.5430 19 6 0.0344 2.3676 5.4046 20 1 -0.8237 2.3173 4.7344 21 6 -0.3526 1.8309 6.7586 22 1 0.0689 2.2660 7.6526 23 6 -1.2449 0.7843 6.8559 24 7 -1.8269 0.3137 5.7744 25 14 -1.6214 0.0297 8.5227 26 1 -2.1878 1.0687 9.4198 27 1 -2.6049 -1.0705 8.3573 28 1 -0.3710 -0.5085 9.1162 29 6 1.1816 1.5298 4.8313 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.8591 1.5896 -2.0809 36 1 2.2534 3.0852 -1.2000 37 1 3.5902 2.7659 -3.3936 38 1 4.9705 3.4099 -2.4524 39 1 4.9747 1.2546 -4.4223 40 1 6.3623 1.9381 -3.5327 41 1 4.2852 -0.3422 -0.9862 42 1 3.3700 -0.0974 -2.5086 43 1 2.2048 3.8907 2.5557 44 1 2.9020 3.7063 4.1843 45 1 -0.0134 4.3091 3.5050 46 1 1.1540 5.4213 4.2603 47 1 -0.3164 4.4158 5.9737 48 1 1.3630 3.8688 6.1939 49 1 -1.5764 0.6543 4.9015 50 1 2.0070 1.5050 5.5428 51 1 0.8323 0.5154 4.6383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327646792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:13 Heat of formation + Delta-G solvation = -117.356307 kcal Electronic energy + Delta-G solvation = -31398.801581 eV Core-core repulsion = 27298.061849 eV Total energy + Delta-G solvation = -4100.739731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30553 -40.62457 -39.75462 -38.86736 -37.38828 -35.44423 -34.06323 -33.46838 -31.69990 -31.45283 -30.36044 -28.14843 -26.77171 -26.48882 -24.96540 -23.86456 -23.46404 -23.15161 -21.85798 -21.20056 -20.20375 -19.00434 -18.25917 -18.01059 -17.60087 -17.22999 -17.14772 -16.64278 -16.11583 -16.03046 -15.85719 -15.65823 -15.51647 -15.24272 -15.04012 -14.78743 -14.67372 -14.40752 -13.98193 -13.87482 -13.63617 -13.47145 -13.27651 -13.27180 -13.03707 -12.82227 -12.69363 -12.60386 -12.37137 -12.26100 -12.14212 -11.96096 -11.93220 -11.86501 -11.57986 -11.22581 -11.18453 -10.84174 -10.65188 -10.48357 -10.11885 -9.82521 -9.65389 -8.63266 -6.37038 0.26188 1.19729 1.52692 1.60490 1.79203 2.04496 2.28430 2.56537 2.96861 3.02603 3.18048 3.53747 3.69028 3.86496 3.95880 4.03557 4.05967 4.17058 4.18329 4.20923 4.29247 4.31944 4.40724 4.48900 4.51203 4.55974 4.62112 4.63974 4.67202 4.73478 4.77211 4.85305 4.86771 4.88322 4.91954 5.01526 5.06894 5.09264 5.13088 5.17864 5.21270 5.35416 5.47624 5.50057 5.59304 5.85225 5.90218 6.05397 6.17541 6.26080 6.56414 6.64328 6.88494 7.44646 8.73762 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.002852 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.770081 B = 9815.570192 C =10574.049918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.085 3.915 3 N -0.570 5.570 4 C 0.121 3.879 5 C -0.134 4.134 6 H 0.065 0.935 7 C -0.141 4.141 8 C 0.041 3.959 9 O -0.407 6.407 10 C 0.050 3.950 11 C 0.516 3.484 12 O -0.520 6.520 13 C 0.485 3.515 14 O -0.543 6.543 15 N -0.576 5.576 16 C 0.049 3.951 17 C -0.123 4.123 18 C -0.101 4.101 19 C 0.021 3.979 20 H -0.002 1.002 21 C -0.605 4.605 22 H 0.053 0.947 23 C -0.030 4.030 24 N -0.932 5.932 25 Si 1.113 2.887 26 H -0.269 1.269 27 H -0.287 1.287 28 H -0.270 1.270 29 C 0.129 3.871 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.019 0.981 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.161 0.839 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.099 0.901 47 H 0.048 0.952 48 H 0.057 0.943 49 H 0.255 0.745 50 H 0.059 0.941 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.222 4.956 -19.840 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 N -0.301 5.301 4 C 0.000 4.000 5 C -0.154 4.154 6 H 0.084 0.916 7 C -0.179 4.179 8 C -0.035 4.035 9 O -0.326 6.326 10 C -0.027 4.027 11 C 0.300 3.700 12 O -0.399 6.399 13 C 0.268 3.732 14 O -0.422 6.422 15 N -0.307 5.307 16 C -0.071 4.071 17 C -0.161 4.161 18 C -0.139 4.139 19 C 0.001 3.999 20 H 0.016 0.984 21 C -0.644 4.644 22 H 0.071 0.929 23 C -0.229 4.229 24 N -0.568 5.568 25 Si 0.935 3.065 26 H -0.194 1.194 27 H -0.213 1.213 28 H -0.195 1.195 29 C 0.007 3.993 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.136 0.864 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.177 0.823 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.524 3.662 -19.089 22.103 hybrid contribution 0.489 1.018 -0.210 1.149 sum 11.013 4.680 -19.299 22.708 Atomic orbital electron populations 1.22033 0.95621 1.02916 1.00868 1.22331 0.94952 0.80600 1.05772 1.47999 1.60888 1.15052 1.06152 1.21842 0.93682 1.00139 0.84369 1.23058 0.96524 0.96451 0.99361 0.91602 1.22912 1.00485 0.98923 0.95548 1.23333 1.01055 0.84771 0.94387 1.88861 1.38633 1.45548 1.59596 1.23772 0.86957 0.96023 0.95898 1.19971 0.78818 0.85919 0.85335 1.90220 1.48208 1.16775 1.84728 1.20515 0.79743 0.87021 0.85900 1.90624 1.50190 1.15672 1.85717 1.48472 1.61411 1.12515 1.08325 1.23415 0.97112 0.77852 1.08724 1.21887 0.97870 1.00277 0.96077 1.21490 1.00041 0.95777 0.96584 1.19109 0.92140 0.93295 0.95317 0.98398 1.22237 1.29817 1.19550 0.92771 0.92894 1.27309 0.93117 0.95286 1.07185 1.70917 1.41513 1.45234 0.99184 0.82992 0.76916 0.76021 0.70622 1.19366 1.21293 1.19507 1.21968 0.97470 0.97371 0.82471 0.90920 0.90542 0.96174 0.87033 0.88599 0.86372 0.89018 0.88036 0.89825 0.90729 0.89407 0.89998 0.89840 0.82335 0.91001 0.93660 0.88286 0.93283 0.92465 0.93443 0.92291 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.75 71.98 0.70 -3.11 16 2 C 0.08 1.89 5.44 86.38 0.47 2.36 16 3 N -0.57 -13.18 2.46 -823.37 -2.03 -15.21 16 4 C 0.12 1.87 4.78 86.38 0.41 2.29 16 5 C -0.13 -2.09 3.34 -9.49 -0.03 -2.12 16 6 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.14 -1.52 6.60 31.58 0.21 -1.31 16 8 C 0.04 0.51 7.70 72.35 0.56 1.07 16 9 O -0.41 -7.99 11.52 -148.98 -1.72 -9.70 16 10 C 0.05 0.79 5.85 72.67 0.43 1.22 16 11 C 0.52 15.88 7.59 87.27 0.66 16.54 16 12 O -0.52 -16.10 12.59 -3.25 -0.04 -16.14 16 13 C 0.48 18.70 7.25 87.27 0.63 19.34 16 14 O -0.54 -23.04 11.58 -3.25 -0.04 -23.08 16 15 N -0.58 -23.21 2.97 -820.47 -2.44 -25.65 16 16 C 0.05 1.64 6.26 86.36 0.54 2.18 16 17 C -0.12 -4.16 6.08 30.67 0.19 -3.97 16 18 C -0.10 -4.16 5.14 30.62 0.16 -4.00 16 19 C 0.02 1.06 1.98 -11.46 -0.02 1.03 16 20 H 0.00 -0.13 6.67 -2.39 -0.02 -0.14 16 21 C -0.61 -33.71 8.32 25.60 0.21 -33.49 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C -0.03 -1.73 5.46 84.65 0.46 -1.27 16 24 N -0.93 -57.98 13.63 21.45 0.29 -57.69 16 25 Si 1.11 50.38 29.91 68.60 2.05 52.43 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 C 0.13 6.17 5.69 86.36 0.49 6.66 16 30 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.02 0.65 7.02 -2.38 -0.02 0.63 16 33 H 0.11 1.63 6.62 -2.38 -0.02 1.61 16 34 H 0.10 2.78 5.29 -3.14 -0.02 2.77 16 35 H 0.12 1.11 7.91 -2.39 -0.02 1.09 16 36 H 0.09 1.53 7.40 -2.38 -0.02 1.51 16 37 H 0.10 0.66 7.86 -2.39 -0.02 0.64 16 38 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.08 0.96 7.58 -2.39 -0.02 0.95 16 43 H 0.16 5.10 3.74 -84.33 -0.32 4.79 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 47 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.26 16.34 6.66 -92.71 -0.62 15.72 16 50 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 51 H 0.05 2.63 7.03 -2.38 -0.02 2.62 16 Total: -1.00 -71.30 390.61 2.91 -68.40 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.76 Total: 23.23 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 6.07 Total: 3.42 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.17 Total: -98.55 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -1.79 Total: -48.93 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -71.30 2.91 -68.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.960 kcal (2) G-P(sol) polarization free energy of solvation -71.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds