Wall clock time and date at job start Tue Mar 31 2020 20:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47213 * 2 1 4 4 C 1.46500 * 120.00079 * 265.81710 * 3 2 1 5 5 C 1.53002 * 109.47087 * 269.99824 * 4 3 2 6 6 H 1.09002 * 110.45272 * 52.39448 * 5 4 3 7 7 C 1.54505 * 110.50983 * 175.00061 * 5 4 3 8 8 C 1.54480 * 104.06288 * 118.64765 * 7 5 4 9 9 O 1.44427 * 104.80346 * 23.97670 * 8 7 5 10 10 C 1.44424 * 105.27386 * 319.48905 * 9 8 7 11 11 C 1.34780 * 120.00056 * 85.81650 * 3 2 1 12 12 O 1.21350 * 120.00179 * 184.76245 * 11 3 2 13 13 C 1.49453 * 119.99511 * 4.75624 * 11 3 2 14 14 O 1.21352 * 119.99779 * 275.10040 * 13 11 3 15 15 N 1.34768 * 119.99905 * 95.11324 * 13 11 3 16 16 C 1.46926 * 120.63234 * 354.97030 * 15 13 11 17 17 C 1.53192 * 108.77676 * 233.58888 * 16 15 13 18 18 C 1.53035 * 109.31558 * 305.36650 * 17 16 15 19 19 C 1.53348 * 109.61088 * 61.37098 * 18 17 16 20 20 H 1.09007 * 109.47202 * 58.54917 * 19 18 17 21 21 C 1.50698 * 109.68716 * 178.74843 * 19 18 17 22 22 H 1.07993 * 120.00027 * 34.54937 * 21 19 18 23 23 C 1.37882 * 119.99914 * 214.54355 * 21 19 18 24 24 N 1.31513 * 119.99583 * 184.62104 * 23 21 19 25 25 Si 1.86802 * 120.00001 * 4.62179 * 23 21 19 26 26 H 1.48506 * 109.46778 * 94.54385 * 25 23 21 27 27 H 1.48493 * 109.47056 * 214.53931 * 25 23 21 28 28 H 1.48500 * 109.47122 * 334.54315 * 25 23 21 29 29 C 1.46930 * 120.63254 * 174.95420 * 15 13 11 30 30 H 1.08996 * 109.47366 * 60.00100 * 1 2 3 31 31 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47252 * 299.99461 * 1 2 3 33 33 H 1.09003 * 109.47335 * 239.99988 * 2 1 3 34 34 H 1.09005 * 109.47284 * 120.00147 * 2 1 3 35 35 H 1.09004 * 109.47123 * 29.99789 * 4 3 2 36 36 H 1.09002 * 109.47252 * 149.99991 * 4 3 2 37 37 H 1.09006 * 110.50853 * 237.29000 * 7 5 4 38 38 H 1.08997 * 110.51255 * 359.97438 * 7 5 4 39 39 H 1.08992 * 110.37473 * 142.80754 * 8 7 5 40 40 H 1.09003 * 110.37044 * 265.14341 * 8 7 5 41 41 H 1.09003 * 110.37420 * 281.68436 * 10 9 8 42 42 H 1.08999 * 110.37499 * 159.34577 * 10 9 8 43 43 H 1.08998 * 109.58849 * 353.37672 * 16 15 13 44 44 H 1.09005 * 109.58864 * 113.80436 * 16 15 13 45 45 H 1.09007 * 109.49688 * 65.31433 * 17 16 15 46 46 H 1.08997 * 109.50101 * 185.37654 * 17 16 15 47 47 H 1.09002 * 109.46375 * 181.38524 * 18 17 16 48 48 H 1.09005 * 109.45703 * 301.35738 * 18 17 16 49 49 H 0.97004 * 119.99621 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.58659 * 246.20063 * 29 15 13 51 51 H 1.09004 * 109.58654 * 6.47474 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3498 2.0410 -1.2653 5 6 3.8216 1.7911 -1.6006 6 1 4.0446 0.7248 -1.5649 7 6 4.1659 2.3701 -2.9911 8 6 5.2491 3.4317 -2.6979 9 8 5.8422 3.0182 -1.4477 10 6 4.7374 2.5715 -0.6318 11 6 2.1627 2.0450 1.1641 12 8 2.4840 3.2151 1.1596 13 6 1.9269 1.3397 2.4605 14 8 0.8022 1.2518 2.9076 15 7 2.9634 0.8016 3.1331 16 6 4.3136 0.8031 2.5537 17 6 4.8548 -0.6300 2.5608 18 6 4.7816 -1.1917 3.9825 19 6 3.3210 -1.2248 4.4482 20 1 2.7350 -1.8379 3.7633 21 6 3.2438 -1.8062 5.8364 22 1 4.0361 -1.6177 6.5456 23 6 2.1615 -2.5787 6.2010 24 7 2.0489 -3.0105 7.4382 25 14 0.8554 -3.0121 4.9379 26 1 1.1631 -4.3373 4.3424 27 1 -0.4739 -3.0626 5.5978 28 1 0.8387 -1.9811 3.8693 29 6 2.7648 0.2026 4.4600 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.7225 1.6379 -2.0605 36 1 2.1751 3.1129 -1.1728 37 1 4.5615 1.5904 -3.6421 38 1 3.2875 2.8339 -3.4399 39 1 5.9983 3.4380 -3.4895 40 1 4.7960 4.4178 -2.5952 41 1 4.2058 3.4256 -0.2122 42 1 5.0935 1.9170 0.1638 43 1 4.2711 1.1726 1.5291 44 1 4.9657 1.4429 3.1483 45 1 4.2546 -1.2489 1.8938 46 1 5.8909 -0.6293 2.2222 47 1 5.1890 -2.2026 3.9950 48 1 5.3617 -0.5581 4.6535 49 1 1.2877 -3.5543 7.6946 50 1 3.2905 0.7934 5.2100 51 1 1.7005 0.1782 4.6943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327646793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:17 Heat of formation + Delta-G solvation = -117.200403 kcal Electronic energy + Delta-G solvation = -32260.557137 eV Core-core repulsion = 28159.824166 eV Total energy + Delta-G solvation = -4100.732971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08319 -39.66289 -38.61931 -37.03345 -36.42802 -33.50181 -33.32932 -32.01376 -30.78831 -30.65849 -29.44809 -27.16289 -25.39781 -25.30787 -23.84650 -23.20144 -22.10016 -21.98134 -20.66364 -19.44861 -18.72908 -17.72045 -17.39589 -16.90094 -16.56857 -16.32706 -15.78300 -15.52785 -15.29373 -14.70363 -14.45054 -14.20813 -14.07803 -14.02483 -13.92436 -13.68437 -13.27885 -13.02642 -12.97721 -12.76714 -12.58142 -12.44085 -12.38171 -12.31206 -11.91668 -11.60280 -11.49230 -11.41637 -11.26284 -11.14438 -10.99417 -10.94397 -10.84640 -10.63127 -10.16574 -9.97964 -9.74357 -9.64010 -9.33800 -9.14855 -9.01324 -8.66249 -8.27100 -6.17799 -4.19383 2.09602 2.23049 2.76056 3.23735 3.35046 3.36897 3.39987 3.71584 4.14408 4.26228 4.35522 4.37581 4.55829 4.68296 4.73099 4.90565 4.95351 5.02747 5.06270 5.12803 5.18249 5.20437 5.22158 5.34146 5.36364 5.42330 5.44097 5.53701 5.62119 5.66048 5.67689 5.76534 5.82521 5.89546 6.04780 6.09228 6.14019 6.20854 6.30202 6.48279 6.54585 6.55238 6.66962 6.70980 6.90091 7.15985 7.25040 7.54889 7.63985 7.70829 8.12984 8.41537 8.87882 9.44752 10.94505 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003788 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.618883 B = 7389.022343 C = 8096.647010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 N -0.601 5.601 4 C 0.121 3.879 5 C -0.141 4.141 6 H 0.088 0.912 7 C -0.146 4.146 8 C 0.044 3.956 9 O -0.375 6.375 10 C 0.041 3.959 11 C 0.520 3.480 12 O -0.514 6.514 13 C 0.506 3.494 14 O -0.517 6.517 15 N -0.587 5.587 16 C 0.104 3.896 17 C -0.135 4.135 18 C -0.106 4.106 19 C 0.006 3.994 20 H 0.038 0.962 21 C -0.515 4.515 22 H 0.076 0.924 23 C 0.076 3.924 24 N -0.893 5.893 25 Si 0.871 3.129 26 H -0.278 1.278 27 H -0.287 1.287 28 H -0.256 1.256 29 C 0.111 3.889 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.062 0.938 48 H 0.056 0.944 49 H 0.265 0.735 50 H 0.067 0.933 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 7.725 -22.900 24.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.022 4.022 3 N -0.336 5.336 4 C -0.001 4.001 5 C -0.160 4.160 6 H 0.106 0.894 7 C -0.185 4.185 8 C -0.033 4.033 9 O -0.294 6.294 10 C -0.035 4.035 11 C 0.303 3.697 12 O -0.388 6.388 13 C 0.288 3.712 14 O -0.393 6.393 15 N -0.321 5.321 16 C -0.019 4.019 17 C -0.173 4.173 18 C -0.144 4.144 19 C -0.013 4.013 20 H 0.057 0.943 21 C -0.553 4.553 22 H 0.094 0.906 23 C -0.127 4.127 24 N -0.529 5.529 25 Si 0.698 3.302 26 H -0.204 1.204 27 H -0.213 1.213 28 H -0.181 1.181 29 C -0.009 4.009 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.029 8.206 -22.426 24.072 hybrid contribution -1.033 -0.398 -0.624 1.270 sum 1.996 7.807 -23.050 24.418 Atomic orbital electron populations 1.22249 0.94907 1.02971 1.03248 1.21716 0.95480 0.81209 1.03804 1.48087 1.65008 1.14807 1.05731 1.21638 0.94102 0.99563 0.84827 1.23021 0.95801 1.01771 0.95442 0.89383 1.22928 0.99694 0.99261 0.96593 1.23397 0.95654 0.97008 0.87244 1.89134 1.29993 1.84068 1.26212 1.23819 0.87438 0.98615 0.93642 1.20647 0.76559 0.87367 0.85118 1.90740 1.46018 1.15300 1.86755 1.20065 0.85949 0.79636 0.85598 1.90789 1.21994 1.57789 1.68704 1.48575 1.07478 1.55601 1.20453 1.21879 0.83501 0.98653 0.97830 1.22003 1.00358 0.94840 1.00124 1.21653 0.99383 1.00496 0.92878 1.19581 0.92354 0.91464 0.97951 0.94343 1.20868 1.07432 1.30927 0.96047 0.90557 1.25091 0.97424 0.95221 0.95002 1.69903 1.30541 1.35506 1.16992 0.86914 0.81488 0.79233 0.82603 1.20376 1.21277 1.18072 1.22667 1.03053 0.96007 0.79201 0.92399 0.91144 0.90901 0.89478 0.90009 0.89604 0.89175 0.90315 0.90196 0.89181 0.92249 0.90215 0.89387 0.91335 0.90751 0.92091 0.91281 0.91881 0.92520 0.92461 0.91421 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 10.21 37.16 0.38 -1.56 16 2 C 0.10 1.08 5.95 -4.04 -0.02 1.05 16 3 N -0.60 -7.00 2.45 -174.19 -0.43 -7.43 16 4 C 0.12 1.06 4.74 -4.04 -0.02 1.04 16 5 C -0.14 -1.17 3.35 -89.05 -0.30 -1.47 16 6 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 7 C -0.15 -0.95 6.74 -25.16 -0.17 -1.12 16 8 C 0.04 0.35 7.63 37.93 0.29 0.64 16 9 O -0.38 -4.39 11.65 -35.23 -0.41 -4.80 16 10 C 0.04 0.46 6.13 37.93 0.23 0.69 16 11 C 0.52 8.05 4.88 -11.58 -0.06 7.99 16 12 O -0.51 -8.78 14.53 5.50 0.08 -8.70 16 13 C 0.51 9.32 5.68 -11.59 -0.07 9.25 16 14 O -0.52 -11.16 15.37 5.49 0.08 -11.08 16 15 N -0.59 -10.45 2.97 -173.27 -0.52 -10.97 16 16 C 0.10 1.49 6.32 -3.71 -0.02 1.47 16 17 C -0.14 -1.88 6.08 -26.61 -0.16 -2.04 16 18 C -0.11 -1.88 5.17 -26.53 -0.14 -2.02 16 19 C 0.01 0.13 1.89 -91.49 -0.17 -0.04 16 20 H 0.04 0.86 5.10 -51.93 -0.27 0.59 16 21 C -0.51 -13.53 8.88 -34.44 -0.31 -13.84 16 22 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 23 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 24 N -0.89 -26.43 13.96 55.43 0.77 -25.65 16 25 Si 0.87 21.00 27.29 -169.99 -4.64 16.36 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H -0.26 -6.04 6.39 56.52 0.36 -5.68 16 29 C 0.11 2.30 5.70 -3.71 -0.02 2.28 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.05 6.97 -51.93 -0.36 0.69 16 33 H 0.09 0.66 8.04 -51.93 -0.42 0.24 16 34 H 0.08 1.06 6.95 -51.93 -0.36 0.70 16 35 H 0.09 0.54 8.07 -51.93 -0.42 0.12 16 36 H 0.09 0.89 7.18 -51.93 -0.37 0.52 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.40 7.73 -51.93 -0.40 0.00 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 1.02 5.86 -51.93 -0.30 0.72 16 42 H 0.09 1.00 5.83 -51.93 -0.30 0.70 16 43 H 0.07 0.88 3.86 -51.93 -0.20 0.68 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 51 H 0.08 1.98 7.00 -51.93 -0.36 1.61 16 LS Contribution 390.31 15.07 5.88 5.88 Total: -1.00 -32.35 390.31 -8.26 -40.62 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.44 Total: 1.43 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.65 Total: 4.34 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.17 Total: -44.05 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.25 Total: -24.58 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.64 Total: 16.36 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.35 -8.26 -40.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.585 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds