Wall clock time and date at job start Tue Mar 31 2020 20:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47213 * 2 1 4 4 C 1.46500 * 120.00079 * 265.81710 * 3 2 1 5 5 C 1.53002 * 109.47087 * 269.99824 * 4 3 2 6 6 H 1.09002 * 110.45272 * 52.39448 * 5 4 3 7 7 C 1.54505 * 110.50983 * 175.00061 * 5 4 3 8 8 C 1.54480 * 104.06288 * 118.64765 * 7 5 4 9 9 O 1.44427 * 104.80346 * 23.97670 * 8 7 5 10 10 C 1.44424 * 105.27386 * 319.48905 * 9 8 7 11 11 C 1.34780 * 120.00056 * 85.81650 * 3 2 1 12 12 O 1.21350 * 120.00179 * 184.76245 * 11 3 2 13 13 C 1.49453 * 119.99511 * 4.75624 * 11 3 2 14 14 O 1.21352 * 119.99779 * 275.10040 * 13 11 3 15 15 N 1.34768 * 119.99905 * 95.11324 * 13 11 3 16 16 C 1.46926 * 120.63234 * 354.97030 * 15 13 11 17 17 C 1.53192 * 108.77676 * 233.58888 * 16 15 13 18 18 C 1.53035 * 109.31558 * 305.36650 * 17 16 15 19 19 C 1.53348 * 109.61088 * 61.37098 * 18 17 16 20 20 H 1.09007 * 109.47202 * 58.54917 * 19 18 17 21 21 C 1.50698 * 109.68716 * 178.74843 * 19 18 17 22 22 H 1.07993 * 120.00027 * 34.54937 * 21 19 18 23 23 C 1.37882 * 119.99914 * 214.54355 * 21 19 18 24 24 N 1.31513 * 119.99583 * 184.62104 * 23 21 19 25 25 Si 1.86802 * 120.00001 * 4.62179 * 23 21 19 26 26 H 1.48506 * 109.46778 * 94.54385 * 25 23 21 27 27 H 1.48493 * 109.47056 * 214.53931 * 25 23 21 28 28 H 1.48500 * 109.47122 * 334.54315 * 25 23 21 29 29 C 1.46930 * 120.63254 * 174.95420 * 15 13 11 30 30 H 1.08996 * 109.47366 * 60.00100 * 1 2 3 31 31 H 1.09003 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47252 * 299.99461 * 1 2 3 33 33 H 1.09003 * 109.47335 * 239.99988 * 2 1 3 34 34 H 1.09005 * 109.47284 * 120.00147 * 2 1 3 35 35 H 1.09004 * 109.47123 * 29.99789 * 4 3 2 36 36 H 1.09002 * 109.47252 * 149.99991 * 4 3 2 37 37 H 1.09006 * 110.50853 * 237.29000 * 7 5 4 38 38 H 1.08997 * 110.51255 * 359.97438 * 7 5 4 39 39 H 1.08992 * 110.37473 * 142.80754 * 8 7 5 40 40 H 1.09003 * 110.37044 * 265.14341 * 8 7 5 41 41 H 1.09003 * 110.37420 * 281.68436 * 10 9 8 42 42 H 1.08999 * 110.37499 * 159.34577 * 10 9 8 43 43 H 1.08998 * 109.58849 * 353.37672 * 16 15 13 44 44 H 1.09005 * 109.58864 * 113.80436 * 16 15 13 45 45 H 1.09007 * 109.49688 * 65.31433 * 17 16 15 46 46 H 1.08997 * 109.50101 * 185.37654 * 17 16 15 47 47 H 1.09002 * 109.46375 * 181.38524 * 18 17 16 48 48 H 1.09005 * 109.45703 * 301.35738 * 18 17 16 49 49 H 0.97004 * 119.99621 * 180.02562 * 24 23 21 50 50 H 1.08997 * 109.58659 * 246.20063 * 29 15 13 51 51 H 1.09004 * 109.58654 * 6.47474 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3498 2.0410 -1.2653 5 6 3.8216 1.7911 -1.6006 6 1 4.0446 0.7248 -1.5649 7 6 4.1659 2.3701 -2.9911 8 6 5.2491 3.4317 -2.6979 9 8 5.8422 3.0182 -1.4477 10 6 4.7374 2.5715 -0.6318 11 6 2.1627 2.0450 1.1641 12 8 2.4840 3.2151 1.1596 13 6 1.9269 1.3397 2.4605 14 8 0.8022 1.2518 2.9076 15 7 2.9634 0.8016 3.1331 16 6 4.3136 0.8031 2.5537 17 6 4.8548 -0.6300 2.5608 18 6 4.7816 -1.1917 3.9825 19 6 3.3210 -1.2248 4.4482 20 1 2.7350 -1.8379 3.7633 21 6 3.2438 -1.8062 5.8364 22 1 4.0361 -1.6177 6.5456 23 6 2.1615 -2.5787 6.2010 24 7 2.0489 -3.0105 7.4382 25 14 0.8554 -3.0121 4.9379 26 1 1.1631 -4.3373 4.3424 27 1 -0.4739 -3.0626 5.5978 28 1 0.8387 -1.9811 3.8693 29 6 2.7648 0.2026 4.4600 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.7225 1.6379 -2.0605 36 1 2.1751 3.1129 -1.1728 37 1 4.5615 1.5904 -3.6421 38 1 3.2875 2.8339 -3.4399 39 1 5.9983 3.4380 -3.4895 40 1 4.7960 4.4178 -2.5952 41 1 4.2058 3.4256 -0.2122 42 1 5.0935 1.9170 0.1638 43 1 4.2711 1.1726 1.5291 44 1 4.9657 1.4429 3.1483 45 1 4.2546 -1.2489 1.8938 46 1 5.8909 -0.6293 2.2222 47 1 5.1890 -2.2026 3.9950 48 1 5.3617 -0.5581 4.6535 49 1 1.2877 -3.5543 7.6946 50 1 3.2905 0.7934 5.2100 51 1 1.7005 0.1782 4.6943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327646793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:16 Heat of formation + Delta-G solvation = -139.045794 kcal Electronic energy + Delta-G solvation = -32261.504424 eV Core-core repulsion = 28159.824166 eV Total energy + Delta-G solvation = -4101.680258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27929 -40.62553 -39.75751 -38.52803 -37.43906 -35.32286 -34.08736 -33.66491 -32.31271 -31.54667 -30.19163 -28.35085 -27.01880 -26.58921 -24.83785 -24.03743 -23.47114 -23.10520 -21.45171 -20.92173 -19.91766 -19.15347 -18.69093 -18.43168 -17.71218 -17.31639 -16.65970 -16.59546 -16.32815 -16.12961 -15.75733 -15.57783 -15.36179 -15.16333 -14.92346 -14.79421 -14.65906 -14.42435 -14.19438 -13.92842 -13.87905 -13.72375 -13.22128 -13.14759 -13.05133 -12.88530 -12.75826 -12.70961 -12.42227 -12.17128 -12.05913 -12.02370 -11.98543 -11.74902 -11.63227 -11.51949 -11.27223 -11.05172 -10.75417 -10.72421 -10.64006 -9.97599 -9.79897 -8.33498 -6.37533 0.87855 0.98230 1.28845 1.36458 1.43417 1.45113 2.17801 2.31190 2.99463 3.03495 3.04846 3.60349 3.68574 3.80527 3.90146 3.92471 4.01051 4.11347 4.18616 4.19266 4.32392 4.36427 4.39020 4.44278 4.45848 4.54648 4.59998 4.65622 4.66454 4.70682 4.79923 4.84025 4.88276 4.89224 4.94698 4.95381 5.01100 5.08922 5.18810 5.20038 5.22742 5.27889 5.37341 5.54900 5.60650 5.67298 5.86345 5.87651 6.11538 6.29290 6.58821 6.67466 6.74980 7.29682 8.82674 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003788 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.618883 B = 7389.022343 C = 8096.647010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.096 3.904 3 N -0.585 5.585 4 C 0.119 3.881 5 C -0.133 4.133 6 H 0.101 0.899 7 C -0.137 4.137 8 C 0.033 3.967 9 O -0.401 6.401 10 C 0.038 3.962 11 C 0.525 3.475 12 O -0.535 6.535 13 C 0.499 3.501 14 O -0.558 6.558 15 N -0.587 5.587 16 C 0.100 3.900 17 C -0.123 4.123 18 C -0.103 4.103 19 C 0.008 3.992 20 H 0.036 0.964 21 C -0.511 4.511 22 H 0.041 0.959 23 C 0.020 3.980 24 N -0.943 5.943 25 Si 0.932 3.068 26 H -0.260 1.260 27 H -0.294 1.294 28 H -0.251 1.251 29 C 0.121 3.879 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.031 0.969 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.266 0.734 50 H 0.063 0.937 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 7.366 -27.796 29.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.026 4.026 3 N -0.319 5.319 4 C -0.002 4.002 5 C -0.153 4.153 6 H 0.119 0.881 7 C -0.175 4.175 8 C -0.043 4.043 9 O -0.321 6.321 10 C -0.039 4.039 11 C 0.307 3.693 12 O -0.412 6.412 13 C 0.282 3.718 14 O -0.436 6.436 15 N -0.320 5.320 16 C -0.021 4.021 17 C -0.161 4.161 18 C -0.141 4.141 19 C -0.012 4.012 20 H 0.054 0.946 21 C -0.550 4.550 22 H 0.060 0.940 23 C -0.178 4.178 24 N -0.582 5.582 25 Si 0.757 3.243 26 H -0.185 1.185 27 H -0.221 1.221 28 H -0.175 1.175 29 C -0.001 4.001 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.152 0.848 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.696 7.839 -27.390 28.729 hybrid contribution -1.156 -0.203 0.919 1.490 sum 2.541 7.636 -26.471 27.667 Atomic orbital electron populations 1.22225 0.95202 1.03407 1.02319 1.21923 0.95231 0.80473 1.04928 1.48130 1.63233 1.15114 1.05399 1.21935 0.95298 0.99009 0.83937 1.22985 0.94435 1.02133 0.95738 0.88058 1.22919 0.99856 0.99089 0.95595 1.23651 0.96751 0.97633 0.86306 1.89106 1.30907 1.84376 1.27695 1.23764 0.87787 0.98010 0.94306 1.20038 0.77217 0.86912 0.85084 1.90746 1.47647 1.15934 1.86887 1.20715 0.85257 0.79085 0.86706 1.90761 1.23633 1.59304 1.69947 1.48526 1.09045 1.55111 1.19299 1.22149 0.81559 0.99511 0.98878 1.21941 1.02844 0.93955 0.97355 1.21547 0.96041 1.00970 0.95543 1.19513 0.95345 0.91247 0.95079 0.94604 1.21168 1.05890 1.30207 0.97718 0.94038 1.25873 0.99753 0.95630 0.96592 1.70040 1.31714 1.37370 1.19088 0.85939 0.78374 0.79694 0.80297 1.18473 1.22067 1.17522 1.22149 1.00888 0.95945 0.81113 0.90068 0.90108 0.95006 0.84810 0.92301 0.85716 0.90344 0.88636 0.88225 0.87667 0.92364 0.92553 0.90112 0.89283 0.90008 0.91063 0.87563 0.91891 0.92748 0.92492 0.91874 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.39 10.21 71.98 0.74 -2.65 16 2 C 0.10 1.71 5.95 86.38 0.51 2.23 16 3 N -0.59 -11.91 2.45 -823.36 -2.02 -13.93 16 4 C 0.12 1.60 4.74 86.38 0.41 2.01 16 5 C -0.13 -1.66 3.35 -9.78 -0.03 -1.69 16 6 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 7 C -0.14 -1.14 6.74 31.61 0.21 -0.92 16 8 C 0.03 0.43 7.63 72.49 0.55 0.99 16 9 O -0.40 -8.57 11.65 -148.98 -1.74 -10.31 16 10 C 0.04 0.75 6.13 72.48 0.44 1.20 16 11 C 0.53 15.68 4.88 87.27 0.43 16.11 16 12 O -0.54 -18.02 14.53 -3.25 -0.05 -18.07 16 13 C 0.50 18.42 5.68 87.27 0.50 18.91 16 14 O -0.56 -24.83 15.37 -3.25 -0.05 -24.88 16 15 N -0.59 -20.72 2.97 -820.47 -2.44 -23.16 16 16 C 0.10 2.67 6.32 86.36 0.55 3.21 16 17 C -0.12 -3.03 6.08 30.67 0.19 -2.84 16 18 C -0.10 -3.52 5.17 30.72 0.16 -3.36 16 19 C 0.01 0.34 1.89 -11.36 -0.02 0.32 16 20 H 0.04 1.58 5.10 -2.38 -0.01 1.57 16 21 C -0.51 -27.83 8.88 25.60 0.23 -27.61 16 22 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 23 C 0.02 1.13 5.47 84.66 0.46 1.59 16 24 N -0.94 -58.04 13.96 21.45 0.30 -57.74 16 25 Si 0.93 44.35 27.29 68.60 1.87 46.22 16 26 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 28 H -0.25 -11.61 6.39 99.48 0.64 -10.98 16 29 C 0.12 5.15 5.70 86.36 0.49 5.64 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.89 6.97 -2.39 -0.02 0.87 16 33 H 0.13 1.20 8.04 -2.39 -0.02 1.18 16 34 H 0.06 1.37 6.95 -2.38 -0.02 1.35 16 35 H 0.12 0.80 8.07 -2.38 -0.02 0.78 16 36 H 0.08 1.32 7.18 -2.39 -0.02 1.30 16 37 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.10 0.47 7.73 -2.39 -0.02 0.45 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 1.39 5.86 -2.39 -0.01 1.37 16 42 H 0.08 1.65 5.83 -2.39 -0.01 1.64 16 43 H 0.09 2.05 3.86 -2.39 -0.01 2.04 16 44 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 45 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 49 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 51 H 0.05 2.61 7.00 -2.39 -0.02 2.59 16 Total: -1.00 -76.24 390.31 2.54 -73.71 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.85 Total: 15.03 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.81 Total: 13.12 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -4.16 Total: -94.83 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -1.83 Total: -53.25 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.87 Total: 46.22 kcal Total: -76.24 2.54 -73.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.340 kcal (2) G-P(sol) polarization free energy of solvation -76.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds