Wall clock time and date at job start Tue Mar 31 2020 20:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46672 * 2 1 4 4 C 1.34771 * 120.00031 * 81.02528 * 3 2 1 5 5 O 1.21347 * 119.99884 * 184.08704 * 4 3 2 6 6 C 1.49457 * 119.99893 * 4.09134 * 4 3 2 7 7 O 1.21344 * 120.00123 * 352.29796 * 6 4 3 8 8 N 1.34775 * 119.99481 * 172.29859 * 6 4 3 9 9 C 1.46923 * 120.63368 * 351.20108 * 8 6 4 10 10 C 1.53190 * 108.77936 * 233.88679 * 9 8 6 11 11 C 1.53051 * 109.31193 * 305.36732 * 10 9 8 12 12 C 1.53042 * 109.53576 * 61.36754 * 11 10 9 13 13 H 1.08996 * 109.53062 * 58.59812 * 12 11 10 14 14 C 1.50695 * 109.49365 * 178.68436 * 12 11 10 15 15 H 1.07999 * 120.00705 * 35.99849 * 14 12 11 16 16 C 1.37881 * 119.99815 * 215.99196 * 14 12 11 17 17 N 1.31514 * 120.00341 * 178.90837 * 16 14 12 18 18 Si 1.86802 * 119.99794 * 358.91114 * 16 14 12 19 19 H 1.48498 * 109.47222 * 84.34656 * 18 16 14 20 20 H 1.48508 * 109.46879 * 204.34507 * 18 16 14 21 21 H 1.48500 * 109.47145 * 324.34323 * 18 16 14 22 22 C 1.46926 * 120.62796 * 171.49011 * 8 6 4 23 23 C 1.46499 * 119.99645 * 261.02034 * 3 2 1 24 24 H 1.08996 * 109.52543 * 359.87458 * 23 3 2 25 25 C 1.53176 * 109.52330 * 120.00738 * 23 3 2 26 26 C 1.53171 * 109.03952 * 176.88171 * 25 23 3 27 27 C 1.53087 * 109.16476 * 303.02044 * 26 25 23 28 28 O 1.42904 * 109.41791 * 57.60471 * 27 26 25 29 29 C 1.42905 * 114.09749 * 298.84440 * 28 27 26 30 30 H 1.09001 * 109.47094 * 299.99489 * 1 2 3 31 31 H 1.09002 * 109.47413 * 60.00227 * 1 2 3 32 32 H 1.09009 * 109.47110 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46373 * 240.00331 * 2 1 3 34 34 H 1.08998 * 109.46796 * 120.00142 * 2 1 3 35 35 H 1.09001 * 109.58666 * 353.67831 * 9 8 6 36 36 H 1.09006 * 109.58227 * 114.10285 * 9 8 6 37 37 H 1.09003 * 109.50004 * 185.41710 * 10 9 8 38 38 H 1.09004 * 109.52267 * 65.33433 * 10 9 8 39 39 H 1.08992 * 109.45930 * 301.34537 * 11 10 9 40 40 H 1.09000 * 109.45487 * 181.38416 * 11 10 9 41 41 H 0.96997 * 120.00473 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.58723 * 245.90306 * 22 8 6 43 43 H 1.09004 * 109.58622 * 6.18267 * 22 8 6 44 44 H 1.09005 * 109.53766 * 296.75242 * 25 23 3 45 45 H 1.09004 * 109.54495 * 57.01239 * 25 23 3 46 46 H 1.09002 * 109.51941 * 62.92432 * 26 25 23 47 47 H 1.08995 * 109.52333 * 183.04556 * 26 25 23 48 48 H 1.09005 * 109.48324 * 177.58963 * 27 26 25 49 49 H 1.09002 * 109.48308 * 297.61010 * 27 26 25 50 50 H 1.08997 * 109.47781 * 301.17447 * 29 28 27 51 51 H 1.09000 * 109.47879 * 181.13410 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0711 2.0773 1.1529 5 8 2.4048 3.2439 1.1425 6 6 1.7189 1.4122 2.4441 7 8 1.2526 0.2919 2.4422 8 7 1.9193 2.0568 3.6106 9 6 2.6560 3.3274 3.6469 10 6 3.8004 3.2053 4.6579 11 6 3.2355 2.7674 6.0113 12 6 2.5689 1.3972 5.8684 13 1 3.2985 0.6730 5.5060 14 6 2.0416 0.9524 7.2082 15 1 1.6282 1.6774 7.8937 16 6 2.0866 -0.3803 7.5589 17 7 1.6461 -0.7657 8.7366 18 14 2.7735 -1.6385 6.3611 19 1 4.2522 -1.6875 6.4885 20 1 2.2056 -2.9759 6.6684 21 1 2.4085 -1.2525 4.9744 22 6 1.4106 1.4990 4.8711 23 6 2.4490 2.0058 -1.2532 24 1 2.3373 1.2948 -2.0718 25 6 1.5906 3.2439 -1.5297 26 6 2.1003 3.9319 -2.7998 27 6 3.5808 4.2791 -2.6236 28 8 4.3174 3.0881 -2.3387 29 6 3.9162 2.4275 -1.1367 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.0628 3.5423 2.6587 36 1 1.9844 4.1306 3.9505 37 1 4.2955 4.1704 4.7655 38 1 4.5192 2.4648 4.3069 39 1 2.4992 3.4959 6.3503 40 1 4.0446 2.7035 6.7389 41 1 1.6782 -1.7032 8.9835 42 1 0.6375 2.1529 5.2744 43 1 0.9933 0.5083 4.6902 44 1 0.5520 2.9436 -1.6693 45 1 1.6623 3.9328 -0.6880 46 1 1.9823 3.2603 -3.6501 47 1 1.5295 4.8439 -2.9741 48 1 3.9600 4.7304 -3.5406 49 1 3.6936 4.9826 -1.7987 50 1 4.0333 3.1066 -0.2922 51 1 4.5369 1.5448 -0.9825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327748752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:37 Heat of formation + Delta-G solvation = -97.672960 kcal Electronic energy + Delta-G solvation = -32010.116025 eV Core-core repulsion = 27910.229827 eV Total energy + Delta-G solvation = -4099.886197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27807 -39.62383 -38.26548 -37.41857 -36.06895 -33.50029 -33.26563 -31.90042 -31.57006 -30.50061 -29.49874 -26.24558 -25.33349 -25.18666 -24.22031 -23.62122 -21.91963 -21.83337 -20.82930 -19.44810 -18.70877 -17.27369 -17.12627 -16.79703 -16.40938 -16.20062 -15.72466 -15.68087 -15.18210 -14.83369 -14.56927 -14.21828 -14.03359 -13.98068 -13.62725 -13.51749 -13.34304 -13.20194 -12.94208 -12.73642 -12.62564 -12.47313 -12.26214 -12.24408 -12.00152 -11.58088 -11.34633 -11.21599 -11.13978 -11.03514 -10.75071 -10.68550 -10.60615 -10.48785 -10.07863 -9.79847 -9.76571 -9.52493 -9.22601 -8.86911 -8.70987 -8.65637 -8.12268 -6.14562 -4.16249 1.53296 2.31792 3.28109 3.31333 3.37879 3.42712 3.46888 3.71256 4.24383 4.39384 4.50673 4.53353 4.58717 4.64107 4.87382 4.94434 5.08462 5.16411 5.26412 5.31127 5.37038 5.41880 5.45402 5.48231 5.51235 5.53365 5.59571 5.68111 5.70666 5.78844 5.89556 5.96705 5.98472 6.14654 6.16629 6.20116 6.26695 6.37774 6.44684 6.54367 6.62410 6.74875 6.82289 6.89582 6.97505 7.22398 7.30053 7.56858 7.69432 7.81608 8.24583 8.45030 8.90368 9.48173 10.97819 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.003462 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.798533 B = 8085.780651 C = 8850.768782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 N -0.581 5.581 4 C 0.511 3.489 5 O -0.514 6.514 6 C 0.493 3.507 7 O -0.521 6.521 8 N -0.571 5.571 9 C 0.074 3.926 10 C -0.138 4.138 11 C -0.106 4.106 12 C 0.009 3.991 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.076 0.924 16 C 0.076 3.924 17 N -0.896 5.896 18 Si 0.870 3.130 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.256 1.256 22 C 0.108 3.892 23 C 0.117 3.883 24 H 0.097 0.903 25 C -0.143 4.143 26 C -0.149 4.149 27 C 0.057 3.943 28 O -0.378 6.378 29 C 0.046 3.954 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.265 0.735 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 7.715 -23.307 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.315 5.315 4 C 0.296 3.704 5 O -0.392 6.392 6 C 0.275 3.725 7 O -0.399 6.399 8 N -0.303 5.303 9 C -0.048 4.048 10 C -0.176 4.176 11 C -0.144 4.144 12 C -0.011 4.011 13 H 0.052 0.948 14 C -0.552 4.552 15 H 0.094 0.906 16 C -0.127 4.127 17 N -0.533 5.533 18 Si 0.697 3.303 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.180 1.180 22 C -0.012 4.012 23 C 0.013 3.987 24 H 0.115 0.885 25 C -0.181 4.181 26 C -0.188 4.188 27 C -0.020 4.020 28 O -0.296 6.296 29 C -0.032 4.032 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.086 0.914 45 H 0.111 0.889 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.073 0.927 50 H 0.092 0.908 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.646 7.500 -23.291 24.524 hybrid contribution -0.071 -0.752 -0.277 0.804 sum 1.576 6.748 -23.568 24.565 Atomic orbital electron populations 1.22081 0.95216 1.02513 1.01804 1.22142 0.95456 0.80571 1.04440 1.47990 1.62461 1.14897 1.06117 1.20600 0.77938 0.86419 0.85439 1.90430 1.47023 1.16160 1.85550 1.19897 0.81333 0.86246 0.84997 1.90673 1.45231 1.17570 1.86399 1.48453 1.51991 1.23073 1.06736 1.22706 0.93990 0.84412 1.03679 1.22029 0.97444 1.00989 0.97110 1.21602 0.99862 0.98424 0.94510 1.19427 0.92980 0.93847 0.94829 0.94818 1.20893 1.41358 0.93909 0.99058 0.90612 1.25084 0.94392 0.98393 0.94867 1.69888 1.46313 1.16849 1.20200 0.86946 0.79488 0.80842 0.82980 1.20326 1.21504 1.17966 1.22672 0.98878 0.99272 0.80376 1.21841 0.95235 0.95854 0.85734 0.88522 1.22085 0.99140 0.97592 0.99248 1.22156 0.97017 1.01459 0.98140 1.22626 0.90970 0.87104 1.01257 1.87940 1.59395 1.39619 1.42638 1.22992 0.93640 0.98252 0.88322 0.91631 0.93512 0.91427 0.90950 0.86954 0.85633 0.91737 0.91626 0.92455 0.92721 0.92198 0.92481 0.91499 0.89684 0.91421 0.88909 0.91193 0.90508 0.88834 0.92675 0.90760 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.64 37.16 0.36 -1.41 16 2 C 0.10 1.08 5.74 -4.04 -0.02 1.06 16 3 N -0.58 -6.96 2.46 -166.45 -0.41 -7.37 16 4 C 0.51 7.43 6.89 -11.58 -0.08 7.35 16 5 O -0.51 -7.51 9.39 5.50 0.05 -7.46 16 6 C 0.49 8.60 7.44 -11.58 -0.09 8.52 16 7 O -0.52 -9.90 11.07 5.50 0.06 -9.84 16 8 N -0.57 -10.37 2.97 -173.27 -0.51 -10.89 16 9 C 0.07 1.16 5.97 -3.71 -0.02 1.14 16 10 C -0.14 -2.18 6.08 -26.61 -0.16 -2.34 16 11 C -0.11 -2.03 5.15 -26.68 -0.14 -2.17 16 12 C 0.01 0.20 1.87 -91.65 -0.17 0.03 16 13 H 0.03 0.80 5.52 -51.93 -0.29 0.52 16 14 C -0.51 -13.88 8.87 -34.44 -0.31 -14.19 16 15 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 18 Si 0.87 21.61 26.64 -169.99 -4.53 17.09 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.26 -6.30 6.59 56.52 0.37 -5.93 16 22 C 0.11 2.28 5.69 -3.71 -0.02 2.26 16 23 C 0.12 1.18 2.76 -67.79 -0.19 0.99 16 24 H 0.10 0.85 7.68 -51.93 -0.40 0.45 16 25 C -0.14 -1.38 5.27 -26.55 -0.14 -1.52 16 26 C -0.15 -1.15 6.14 -26.60 -0.16 -1.31 16 27 C 0.06 0.48 6.84 37.20 0.25 0.74 16 28 O -0.38 -4.09 10.77 -35.23 -0.38 -4.47 16 29 C 0.05 0.49 6.08 37.21 0.23 0.72 16 30 H 0.06 0.90 6.71 -51.93 -0.35 0.56 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.07 0.63 7.74 -51.93 -0.40 0.23 16 34 H 0.11 1.55 5.61 -51.93 -0.29 1.26 16 35 H 0.13 1.89 4.34 -54.58 -0.24 1.66 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.08 1.96 6.36 -51.93 -0.33 1.63 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 1.09 5.97 -51.93 -0.31 0.78 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.91 6.23 -51.93 -0.32 0.59 16 51 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -30.22 380.47 -8.40 -38.62 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.43 Total: 2.80 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.76 Total: 1.90 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.15 Total: -44.37 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.27 Total: -21.77 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.53 Total: 17.09 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.22 -8.40 -38.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.049 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds