Wall clock time and date at job start Tue Mar 31 2020 20:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47362 * 2 1 4 4 C 1.34774 * 120.00277 * 273.60671 * 3 2 1 5 5 O 1.21349 * 120.00264 * 185.29095 * 4 3 2 6 6 C 1.49455 * 119.99970 * 5.28092 * 4 3 2 7 7 O 1.21345 * 119.99950 * 6.73162 * 6 4 3 8 8 N 1.34780 * 120.00015 * 186.72257 * 6 4 3 9 9 C 1.46928 * 120.63142 * 358.16065 * 8 6 4 10 10 C 1.53185 * 108.77439 * 126.36170 * 9 8 6 11 11 C 1.53042 * 109.31344 * 54.63906 * 10 9 8 12 12 C 1.53049 * 109.53345 * 298.63044 * 11 10 9 13 13 H 1.08997 * 109.49673 * 301.41087 * 12 11 10 14 14 C 1.50701 * 109.49446 * 181.31476 * 12 11 10 15 15 H 1.08006 * 120.00261 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99804 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00040 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47139 * 90.00416 * 18 16 14 20 20 H 1.48503 * 109.46980 * 209.99965 * 18 16 14 21 21 H 1.48495 * 109.47185 * 330.00297 * 18 16 14 22 22 C 1.46922 * 120.62649 * 177.87494 * 8 6 4 23 23 C 1.46497 * 119.99867 * 93.59923 * 3 2 1 24 24 H 1.09001 * 109.52448 * 0.12487 * 23 3 2 25 25 C 1.53179 * 109.52628 * 240.00271 * 23 3 2 26 26 C 1.53173 * 109.03895 * 183.11117 * 25 23 3 27 27 C 1.53092 * 109.16430 * 56.98336 * 26 25 23 28 28 O 1.42905 * 109.41229 * 302.39371 * 27 26 25 29 29 C 1.42900 * 114.10224 * 61.15240 * 28 27 26 30 30 H 1.09008 * 109.47164 * 59.99696 * 1 2 3 31 31 H 1.08995 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47247 * 300.00036 * 1 2 3 33 33 H 1.08996 * 109.47096 * 240.00411 * 2 1 3 34 34 H 1.08991 * 109.47387 * 120.00248 * 2 1 3 35 35 H 1.08991 * 109.58268 * 246.15498 * 9 8 6 36 36 H 1.09009 * 109.58454 * 6.57755 * 9 8 6 37 37 H 1.09003 * 109.50003 * 174.58911 * 10 9 8 38 38 H 1.08999 * 109.50195 * 294.68402 * 10 9 8 39 39 H 1.08992 * 109.46027 * 58.64897 * 11 10 9 40 40 H 1.08999 * 109.46124 * 178.61693 * 11 10 9 41 41 H 0.96996 * 120.00059 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.59348 * 353.42410 * 22 8 6 43 43 H 1.08997 * 109.58612 * 113.85394 * 22 8 6 44 44 H 1.09004 * 109.53958 * 63.24794 * 25 23 3 45 45 H 1.08999 * 109.54608 * 302.98535 * 25 23 3 46 46 H 1.08994 * 109.52741 * 297.07535 * 26 25 23 47 47 H 1.09003 * 109.57680 * 176.91653 * 26 25 23 48 48 H 1.08995 * 109.48490 * 182.40833 * 27 26 25 49 49 H 1.09004 * 109.48796 * 62.37476 * 27 26 25 50 50 H 1.09007 * 109.47721 * 58.82836 * 29 28 27 51 51 H 1.08999 * 109.48006 * 178.85784 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1738 2.0411 -1.1648 5 8 2.6681 3.1493 -1.1732 6 6 1.7376 1.4078 -2.4464 7 8 1.1339 0.3554 -2.4284 8 7 2.0147 2.0058 -3.6221 9 6 2.7092 3.3000 -3.6583 10 6 3.9351 3.1763 -4.5686 11 6 3.4966 2.6597 -5.9408 12 6 2.8664 1.2733 -5.7882 13 1 3.5883 0.5934 -5.3357 14 6 2.4643 0.7518 -7.1437 15 1 2.6407 1.3488 -8.0262 16 6 1.8721 -0.4882 -7.2573 17 7 1.6577 -1.2155 -6.1827 18 14 1.3742 -1.1350 -8.9376 19 1 2.5039 -1.8955 -9.5298 20 1 0.1967 -2.0285 -8.7950 21 1 1.0264 0.0048 -9.8236 22 6 1.6334 1.3728 -4.8919 23 6 2.3376 2.0452 1.2662 24 1 2.1529 1.3600 2.0936 25 6 1.4598 3.2902 1.4271 26 6 1.8562 4.0181 2.7152 27 6 3.3470 4.3617 2.6598 28 8 4.1042 3.1634 2.4783 29 6 3.8099 2.4650 1.2668 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0381 4.0639 -4.0509 36 1 3.0274 3.5723 -2.6519 37 1 4.4050 4.1534 -4.6809 38 1 4.6468 2.4785 -4.1276 39 1 2.7663 3.3452 -6.3705 40 1 4.3636 2.5941 -6.5982 41 1 1.2414 -2.0879 -6.2627 42 1 1.2419 0.3739 -4.6994 43 1 0.8728 1.9763 -5.3872 44 1 0.4126 2.9930 1.4837 45 1 1.6065 3.9525 0.5739 46 1 1.6627 3.3732 3.5723 47 1 1.2744 4.9349 2.8104 48 1 3.6443 4.8418 3.5920 49 1 3.5334 5.0391 1.8264 50 1 4.0021 3.1176 0.4151 51 1 4.4406 1.5789 1.1957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327748757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:46 Heat of formation + Delta-G solvation = -93.925607 kcal Electronic energy + Delta-G solvation = -32004.805693 eV Core-core repulsion = 27905.081993 eV Total energy + Delta-G solvation = -4099.723700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.11279 -39.43010 -38.05944 -37.21239 -35.91053 -33.40809 -33.23697 -31.75373 -31.41618 -29.76059 -29.39717 -26.04791 -25.21748 -25.02275 -24.02669 -23.48120 -21.95887 -21.62018 -20.74515 -19.37765 -18.51109 -17.06618 -16.98022 -16.45038 -16.08189 -15.94767 -15.54960 -15.38406 -15.08042 -14.77703 -14.55604 -14.22907 -13.89441 -13.79364 -13.55550 -13.28114 -13.17611 -12.91507 -12.84544 -12.64534 -12.50324 -12.22099 -12.09617 -11.88284 -11.76766 -11.44999 -11.22553 -11.06688 -10.99239 -10.82419 -10.70433 -10.56202 -10.43811 -10.26796 -10.04310 -9.90396 -9.65412 -9.18167 -9.12797 -8.77000 -8.48313 -8.35621 -7.81747 -6.04255 -4.12245 1.74208 2.50255 3.28419 3.35892 3.38445 3.57902 3.63817 3.85690 4.38857 4.44131 4.60899 4.66939 4.67531 4.73041 4.99993 5.07499 5.16558 5.26413 5.41052 5.43529 5.48792 5.57882 5.59269 5.61909 5.66056 5.67248 5.69672 5.80249 5.89523 5.90416 6.03613 6.08864 6.21728 6.32574 6.38290 6.43566 6.58056 6.60668 6.70507 6.85235 6.97334 6.99474 7.04669 7.15263 7.19539 7.57415 7.79958 7.91181 7.94727 8.15233 8.33645 8.58102 8.91676 9.53361 11.01183 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.003213 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.453538 B = 8712.407337 C = 9657.464380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 N -0.580 5.580 4 C 0.514 3.486 5 O -0.515 6.515 6 C 0.491 3.509 7 O -0.514 6.514 8 N -0.565 5.565 9 C 0.049 3.951 10 C -0.130 4.130 11 C -0.113 4.113 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.519 4.519 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.882 5.882 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.108 3.892 23 C 0.117 3.883 24 H 0.096 0.904 25 C -0.140 4.140 26 C -0.149 4.149 27 C 0.058 3.942 28 O -0.380 6.380 29 C 0.042 3.958 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.146 0.854 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.263 0.737 42 H 0.124 0.876 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.054 0.946 50 H 0.082 0.918 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 8.256 17.806 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.020 4.020 3 N -0.314 5.314 4 C 0.299 3.701 5 O -0.394 6.394 6 C 0.272 3.728 7 O -0.391 6.391 8 N -0.297 5.297 9 C -0.073 4.073 10 C -0.169 4.169 11 C -0.151 4.151 12 C 0.022 3.978 13 H 0.047 0.953 14 C -0.558 4.558 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.520 5.520 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.011 4.011 23 C 0.014 3.986 24 H 0.114 0.886 25 C -0.178 4.178 26 C -0.187 4.187 27 C -0.019 4.019 28 O -0.298 6.298 29 C -0.035 4.035 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.127 0.873 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.111 0.889 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.375 8.018 17.988 19.698 hybrid contribution -0.643 -0.363 -1.216 1.423 sum -0.268 7.655 16.772 18.438 Atomic orbital electron populations 1.22094 0.95229 1.02459 1.01856 1.22027 0.95548 0.80344 1.04080 1.48000 1.63679 1.15032 1.04701 1.20858 0.78237 0.85423 0.85583 1.90208 1.44009 1.20448 1.84721 1.19714 0.82586 0.85791 0.84706 1.90716 1.40586 1.21716 1.86126 1.48468 1.53938 1.21022 1.06242 1.23150 0.93929 0.84193 1.06028 1.21908 0.97254 1.00310 0.97393 1.21663 0.99780 0.99208 0.94431 1.18885 0.92823 0.91172 0.94913 0.95339 1.21092 1.40489 1.01906 0.92267 0.92293 1.25049 0.95552 0.96741 0.96675 1.69866 1.42691 1.11747 1.27658 0.86576 0.78139 0.78864 0.84334 1.20670 1.21169 1.19905 1.22386 0.99177 0.99989 0.79577 1.21811 0.96090 0.95098 0.85647 0.88597 1.22027 0.99498 0.97197 0.99102 1.22152 0.97280 1.01238 0.98059 1.22611 0.90449 0.87038 1.01823 1.87926 1.62839 1.37927 1.41081 1.23098 0.94183 0.97899 0.88338 0.91061 0.91594 0.93845 0.87262 0.91174 0.92578 0.83811 0.92283 0.92516 0.93261 0.93137 0.92660 0.85772 0.93503 0.91309 0.89564 0.91145 0.90562 0.88931 0.92723 0.90031 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.68 37.16 0.36 -1.61 16 2 C 0.10 1.28 5.66 -4.04 -0.02 1.26 16 3 N -0.58 -7.62 2.43 -166.46 -0.41 -8.03 16 4 C 0.51 8.16 7.03 -11.58 -0.08 8.08 16 5 O -0.52 -8.15 9.21 5.50 0.05 -8.10 16 6 C 0.49 9.47 7.54 -11.58 -0.09 9.38 16 7 O -0.51 -10.78 10.85 5.50 0.06 -10.72 16 8 N -0.57 -11.46 2.98 -173.55 -0.52 -11.98 16 9 C 0.05 0.85 6.23 -3.71 -0.02 0.83 16 10 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 11 C -0.11 -2.31 5.11 -26.68 -0.14 -2.45 16 12 C 0.04 1.01 2.24 -91.87 -0.21 0.80 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.52 -13.91 8.56 -34.44 -0.29 -14.21 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 17 N -0.88 -24.94 11.39 55.43 0.63 -24.30 16 18 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C 0.11 2.58 5.37 -3.93 -0.02 2.56 16 23 C 0.12 1.29 2.75 -67.79 -0.19 1.11 16 24 H 0.10 0.93 7.75 -51.93 -0.40 0.53 16 25 C -0.14 -1.46 5.28 -26.55 -0.14 -1.60 16 26 C -0.15 -1.24 6.14 -26.59 -0.16 -1.40 16 27 C 0.06 0.52 6.84 37.20 0.25 0.78 16 28 O -0.38 -4.39 10.77 -35.23 -0.38 -4.77 16 29 C 0.04 0.50 6.08 37.20 0.23 0.72 16 30 H 0.07 1.09 6.48 -51.92 -0.34 0.76 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.11 1.68 5.84 -51.93 -0.30 1.38 16 34 H 0.07 0.69 7.84 -51.93 -0.41 0.29 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.15 2.42 3.78 -57.00 -0.22 2.20 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.12 3.36 5.13 -51.93 -0.27 3.10 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.07 6.29 -51.93 -0.33 0.74 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 1.09 5.91 -51.93 -0.31 0.79 16 51 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -28.77 381.58 -9.06 -37.83 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.45 Total: 4.98 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.78 Total: 3.41 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.29 Total: -44.31 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.27 Total: -23.60 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.77 -9.06 -37.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.098 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds