Wall clock time and date at job start Tue Mar 31 2020 20:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47362 * 2 1 4 4 C 1.34774 * 120.00277 * 273.60671 * 3 2 1 5 5 O 1.21349 * 120.00264 * 185.29095 * 4 3 2 6 6 C 1.49455 * 119.99970 * 5.28092 * 4 3 2 7 7 O 1.21345 * 119.99950 * 6.73162 * 6 4 3 8 8 N 1.34780 * 120.00015 * 186.72257 * 6 4 3 9 9 C 1.46928 * 120.63142 * 358.16065 * 8 6 4 10 10 C 1.53185 * 108.77439 * 126.36170 * 9 8 6 11 11 C 1.53042 * 109.31344 * 54.63906 * 10 9 8 12 12 C 1.53049 * 109.53345 * 298.63044 * 11 10 9 13 13 H 1.08997 * 109.49673 * 301.41087 * 12 11 10 14 14 C 1.50701 * 109.49446 * 181.31476 * 12 11 10 15 15 H 1.08006 * 120.00261 * 0.02562 * 14 12 11 16 16 C 1.37878 * 119.99804 * 179.97438 * 14 12 11 17 17 N 1.31516 * 120.00040 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47139 * 90.00416 * 18 16 14 20 20 H 1.48503 * 109.46980 * 209.99965 * 18 16 14 21 21 H 1.48495 * 109.47185 * 330.00297 * 18 16 14 22 22 C 1.46922 * 120.62649 * 177.87494 * 8 6 4 23 23 C 1.46497 * 119.99867 * 93.59923 * 3 2 1 24 24 H 1.09001 * 109.52448 * 0.12487 * 23 3 2 25 25 C 1.53179 * 109.52628 * 240.00271 * 23 3 2 26 26 C 1.53173 * 109.03895 * 183.11117 * 25 23 3 27 27 C 1.53092 * 109.16430 * 56.98336 * 26 25 23 28 28 O 1.42905 * 109.41229 * 302.39371 * 27 26 25 29 29 C 1.42900 * 114.10224 * 61.15240 * 28 27 26 30 30 H 1.09008 * 109.47164 * 59.99696 * 1 2 3 31 31 H 1.08995 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47247 * 300.00036 * 1 2 3 33 33 H 1.08996 * 109.47096 * 240.00411 * 2 1 3 34 34 H 1.08991 * 109.47387 * 120.00248 * 2 1 3 35 35 H 1.08991 * 109.58268 * 246.15498 * 9 8 6 36 36 H 1.09009 * 109.58454 * 6.57755 * 9 8 6 37 37 H 1.09003 * 109.50003 * 174.58911 * 10 9 8 38 38 H 1.08999 * 109.50195 * 294.68402 * 10 9 8 39 39 H 1.08992 * 109.46027 * 58.64897 * 11 10 9 40 40 H 1.08999 * 109.46124 * 178.61693 * 11 10 9 41 41 H 0.96996 * 120.00059 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.59348 * 353.42410 * 22 8 6 43 43 H 1.08997 * 109.58612 * 113.85394 * 22 8 6 44 44 H 1.09004 * 109.53958 * 63.24794 * 25 23 3 45 45 H 1.08999 * 109.54608 * 302.98535 * 25 23 3 46 46 H 1.08994 * 109.52741 * 297.07535 * 26 25 23 47 47 H 1.09003 * 109.57680 * 176.91653 * 26 25 23 48 48 H 1.08995 * 109.48490 * 182.40833 * 27 26 25 49 49 H 1.09004 * 109.48796 * 62.37476 * 27 26 25 50 50 H 1.09007 * 109.47721 * 58.82836 * 29 28 27 51 51 H 1.08999 * 109.48006 * 178.85784 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1738 2.0411 -1.1648 5 8 2.6681 3.1493 -1.1732 6 6 1.7376 1.4078 -2.4464 7 8 1.1339 0.3554 -2.4284 8 7 2.0147 2.0058 -3.6221 9 6 2.7092 3.3000 -3.6583 10 6 3.9351 3.1763 -4.5686 11 6 3.4966 2.6597 -5.9408 12 6 2.8664 1.2733 -5.7882 13 1 3.5883 0.5934 -5.3357 14 6 2.4643 0.7518 -7.1437 15 1 2.6407 1.3488 -8.0262 16 6 1.8721 -0.4882 -7.2573 17 7 1.6577 -1.2155 -6.1827 18 14 1.3742 -1.1350 -8.9376 19 1 2.5039 -1.8955 -9.5298 20 1 0.1967 -2.0285 -8.7950 21 1 1.0264 0.0048 -9.8236 22 6 1.6334 1.3728 -4.8919 23 6 2.3376 2.0452 1.2662 24 1 2.1529 1.3600 2.0936 25 6 1.4598 3.2902 1.4271 26 6 1.8562 4.0181 2.7152 27 6 3.3470 4.3617 2.6598 28 8 4.1042 3.1634 2.4783 29 6 3.8099 2.4650 1.2668 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0381 4.0639 -4.0509 36 1 3.0274 3.5723 -2.6519 37 1 4.4050 4.1534 -4.6809 38 1 4.6468 2.4785 -4.1276 39 1 2.7663 3.3452 -6.3705 40 1 4.3636 2.5941 -6.5982 41 1 1.2414 -2.0879 -6.2627 42 1 1.2419 0.3739 -4.6994 43 1 0.8728 1.9763 -5.3872 44 1 0.4126 2.9930 1.4837 45 1 1.6065 3.9525 0.5739 46 1 1.6627 3.3732 3.5723 47 1 1.2744 4.9349 2.8104 48 1 3.6443 4.8418 3.5920 49 1 3.5334 5.0391 1.8264 50 1 4.0021 3.1176 0.4151 51 1 4.4406 1.5789 1.1957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327748757.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:45 Heat of formation + Delta-G solvation = -110.788637 kcal Electronic energy + Delta-G solvation = -32005.536929 eV Core-core repulsion = 27905.081993 eV Total energy + Delta-G solvation = -4100.454936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.36519 -40.61915 -39.28631 -38.71446 -37.17659 -35.16692 -34.21720 -33.43277 -32.33770 -31.55630 -30.43959 -27.62170 -26.84470 -26.04863 -25.26768 -24.47954 -23.57960 -23.00315 -21.68006 -20.89977 -19.94788 -18.61985 -18.13709 -17.96477 -17.35482 -17.27722 -16.69948 -16.58421 -16.40525 -16.19842 -15.66094 -15.52169 -15.32213 -15.18703 -14.68313 -14.63363 -14.50177 -14.41103 -14.16909 -13.90099 -13.63313 -13.58642 -13.44378 -13.21515 -12.88989 -12.81257 -12.67194 -12.40533 -12.30834 -12.16425 -12.07360 -11.97577 -11.79537 -11.69788 -11.42929 -11.35879 -11.07197 -10.96751 -10.68669 -10.53981 -9.83827 -9.78199 -9.46836 -8.12241 -6.28480 0.36516 1.25684 1.41529 1.42045 1.52428 2.14920 2.34071 2.42813 2.96754 3.12574 3.18603 3.67221 3.77162 3.89114 3.97586 4.12005 4.16181 4.17871 4.21660 4.34542 4.39562 4.45565 4.52979 4.58344 4.62915 4.65595 4.74907 4.79386 4.81955 4.83897 4.89512 4.90894 5.04000 5.04621 5.08706 5.13153 5.16834 5.22547 5.27306 5.32592 5.34022 5.50443 5.55440 5.58742 5.84863 5.92597 5.96464 6.18128 6.28938 6.44137 6.70922 6.82678 7.04183 7.41075 8.91474 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019447 B = 0.003213 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.453538 B = 8712.407337 C = 9657.464380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.101 3.899 3 N -0.568 5.568 4 C 0.519 3.481 5 O -0.514 6.514 6 C 0.480 3.520 7 O -0.537 6.537 8 N -0.576 5.576 9 C 0.050 3.950 10 C -0.123 4.123 11 C -0.107 4.107 12 C 0.041 3.959 13 H -0.011 1.011 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.124 3.876 23 C 0.117 3.883 24 H 0.121 0.879 25 C -0.139 4.139 26 C -0.141 4.141 27 C 0.050 3.950 28 O -0.390 6.390 29 C 0.046 3.954 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.261 0.739 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.115 0.885 49 H 0.047 0.953 50 H 0.062 0.938 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 9.609 19.643 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 N -0.301 5.301 4 C 0.303 3.697 5 O -0.393 6.393 6 C 0.263 3.737 7 O -0.415 6.415 8 N -0.307 5.307 9 C -0.071 4.071 10 C -0.161 4.161 11 C -0.145 4.145 12 C 0.021 3.979 13 H 0.007 0.993 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.186 4.186 17 N -0.550 5.550 18 Si 0.783 3.217 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.189 1.189 22 C 0.003 3.997 23 C 0.014 3.986 24 H 0.139 0.861 25 C -0.177 4.177 26 C -0.179 4.179 27 C -0.026 4.026 28 O -0.308 6.308 29 C -0.031 4.031 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.174 0.826 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.133 0.867 49 H 0.066 0.934 50 H 0.080 0.920 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.463 9.395 19.856 21.971 hybrid contribution -0.660 -0.794 -1.710 1.998 sum -0.197 8.601 18.146 20.082 Atomic orbital electron populations 1.22008 0.94947 1.02770 1.01203 1.22044 0.95727 0.79960 1.04328 1.48005 1.62388 1.15069 1.04588 1.20092 0.78977 0.85452 0.85134 1.90188 1.44370 1.20256 1.84530 1.20422 0.81951 0.85555 0.85797 1.90710 1.41267 1.22759 1.86810 1.48466 1.54722 1.22028 1.05527 1.23354 0.93852 0.82932 1.06923 1.21871 0.97140 1.01826 0.95245 1.21556 0.99634 0.96752 0.96513 1.18808 0.92371 0.92793 0.93892 0.99253 1.21469 1.40407 1.02316 0.93345 0.92161 1.25844 0.95571 0.97081 1.00146 1.70037 1.43402 1.11879 1.29673 0.85563 0.77710 0.78342 0.80100 1.20167 1.21079 1.18938 1.21802 0.98434 0.98234 0.81275 1.22035 0.95948 0.95891 0.84687 0.86095 1.22006 0.99589 0.96552 0.99533 1.22120 0.96729 1.01962 0.97081 1.22827 0.90899 0.86158 1.02686 1.87920 1.63573 1.38762 1.40552 1.22968 0.94555 0.97648 0.87967 0.94510 0.90893 0.91478 0.90509 0.87386 0.91528 0.82594 0.88556 0.93454 0.92697 0.92937 0.92936 0.89426 0.94336 0.90854 0.91714 0.89859 0.88926 0.86694 0.93432 0.92021 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.68 71.98 0.70 -2.96 16 2 C 0.10 2.45 5.66 86.38 0.49 2.94 16 3 N -0.57 -14.32 2.43 -798.92 -1.95 -16.26 16 4 C 0.52 16.48 7.03 87.27 0.61 17.09 16 5 O -0.51 -15.96 9.21 -3.24 -0.03 -15.99 16 6 C 0.48 19.21 7.54 87.27 0.66 19.87 16 7 O -0.54 -23.84 10.85 -3.23 -0.04 -23.87 16 8 N -0.58 -24.10 2.98 -821.33 -2.45 -26.55 16 9 C 0.05 1.71 6.23 86.36 0.54 2.25 16 10 C -0.12 -4.17 6.08 30.67 0.19 -3.98 16 11 C -0.11 -4.36 5.11 30.62 0.16 -4.21 16 12 C 0.04 2.07 2.24 -11.60 -0.03 2.04 16 13 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 14 C -0.54 -29.58 8.56 25.60 0.22 -29.36 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.01 0.74 5.31 84.65 0.45 1.19 16 17 N -0.91 -53.77 11.39 21.45 0.24 -53.52 16 18 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.12 6.20 5.37 86.22 0.46 6.66 16 23 C 0.12 2.30 2.75 45.08 0.12 2.42 16 24 H 0.12 1.87 7.75 -2.39 -0.02 1.85 16 25 C -0.14 -2.56 5.28 30.71 0.16 -2.40 16 26 C -0.14 -1.88 6.14 30.68 0.19 -1.69 16 27 C 0.05 0.78 6.84 72.01 0.49 1.28 16 28 O -0.39 -8.12 10.77 -148.98 -1.60 -9.72 16 29 C 0.05 1.01 6.08 72.01 0.44 1.44 16 30 H 0.04 1.14 6.48 -2.38 -0.02 1.13 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 2.43 5.84 -2.39 -0.01 2.42 16 34 H 0.11 1.84 7.84 -2.39 -0.02 1.82 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.16 5.09 3.78 -82.80 -0.31 4.78 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 42 H 0.09 5.05 5.13 -2.39 -0.01 5.04 16 43 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 1.29 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.50 6.29 -2.39 -0.02 1.49 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 49 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.06 1.60 5.91 -2.38 -0.01 1.58 16 51 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.69 381.58 2.67 -63.02 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.62 Total: 24.48 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 5.85 Total: 12.60 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -4.15 Total: -96.33 kcal Atomic # 8 Polarization: -47.91 SS G_CDS: -1.67 Total: -49.58 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -65.69 2.67 -63.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327748757.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.768 kcal (2) G-P(sol) polarization free energy of solvation -65.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds