Wall clock time and date at job start Tue Mar 31 2020 21:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.46785 * 2 1 4 4 C 1.42899 * 113.99987 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47344 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.91441 * 51.10041 * 5 4 3 7 7 C 1.55160 * 111.00402 * 175.00087 * 5 4 3 8 8 C 1.54326 * 102.94105 * 153.57812 * 7 5 4 9 9 N 1.47023 * 107.27136 * 337.80639 * 8 7 5 10 10 C 1.34776 * 125.65215 * 178.89593 * 9 8 7 11 11 O 1.21354 * 120.00114 * 180.02562 * 10 9 8 12 12 C 1.49455 * 119.99797 * 0.02562 * 10 9 8 13 13 O 1.21349 * 119.99596 * 6.41076 * 12 10 9 14 14 N 1.34769 * 119.99960 * 186.41326 * 12 10 9 15 15 C 1.46928 * 120.63311 * 6.97138 * 14 12 10 16 16 C 1.53190 * 108.78171 * 233.58938 * 15 14 12 17 17 C 1.53040 * 109.31089 * 305.36690 * 16 15 14 18 18 C 1.53041 * 109.53796 * 61.36507 * 17 16 15 19 19 H 1.09004 * 109.49964 * 58.61379 * 18 17 16 20 20 C 1.50704 * 109.49782 * 178.68241 * 18 17 16 21 21 H 1.07993 * 120.00152 * 2.55377 * 20 18 17 22 22 C 1.37876 * 119.99766 * 182.55592 * 20 18 17 23 23 N 1.31512 * 120.00157 * 354.25830 * 22 20 18 24 24 Si 1.86800 * 119.99926 * 174.26198 * 22 20 18 25 25 H 1.48498 * 109.47385 * 95.00167 * 24 22 20 26 26 H 1.48503 * 109.47321 * 215.00227 * 24 22 20 27 27 H 1.48504 * 109.46740 * 334.99995 * 24 22 20 28 28 C 1.46924 * 120.62755 * 186.70322 * 14 12 10 29 29 C 1.47431 * 108.70310 * 358.94358 * 9 8 7 30 30 H 1.09002 * 109.47517 * 299.99648 * 1 2 3 31 31 H 1.08999 * 109.47661 * 59.99827 * 1 2 3 32 32 H 1.09007 * 109.46965 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47021 * 240.00300 * 2 1 3 34 34 H 1.08997 * 109.47120 * 119.99648 * 2 1 3 35 35 H 1.09003 * 109.47037 * 59.99728 * 4 3 2 36 36 H 1.09006 * 109.47250 * 300.00194 * 4 3 2 37 37 H 1.09000 * 110.72048 * 271.93949 * 7 5 4 38 38 H 1.08994 * 110.71930 * 35.21272 * 7 5 4 39 39 H 1.08993 * 109.88456 * 97.22223 * 8 7 5 40 40 H 1.09000 * 109.88271 * 218.39293 * 8 7 5 41 41 H 1.09004 * 109.58454 * 353.38211 * 15 14 12 42 42 H 1.09007 * 109.58205 * 113.65516 * 15 14 12 43 43 H 1.09000 * 109.49399 * 65.31787 * 16 15 14 44 44 H 1.08996 * 109.49884 * 185.41382 * 16 15 14 45 45 H 1.08997 * 109.45750 * 181.37813 * 17 16 15 46 46 H 1.08995 * 109.46226 * 301.35732 * 17 16 15 47 47 H 0.97011 * 119.99770 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.58401 * 246.19454 * 28 14 12 49 49 H 1.09000 * 109.59293 * 6.61834 * 28 14 12 50 50 H 1.09005 * 110.36325 * 265.29182 * 29 9 8 51 51 H 1.09000 * 110.37003 * 142.97087 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8252 2.9385 0.0012 6 1 3.3075 3.4791 0.7935 7 6 5.3628 3.1038 0.1280 8 6 5.6214 4.4647 -0.5521 9 7 4.4877 4.7259 -1.4510 10 6 4.3264 5.8259 -2.2129 11 8 3.3464 5.9358 -2.9201 12 6 5.3545 6.9103 -2.1866 13 8 6.3884 6.7513 -1.5715 14 7 5.1333 8.0647 -2.8459 15 6 3.8291 8.3343 -3.4666 16 6 4.0487 8.6932 -4.9396 17 6 5.0421 9.8534 -5.0352 18 6 6.3847 9.4283 -4.4363 19 1 6.7620 8.5566 -4.9710 20 6 7.3717 10.5604 -4.5600 21 1 7.0605 11.5044 -4.9822 22 6 8.6721 10.3909 -4.1342 23 7 9.0231 9.2834 -3.5179 24 14 9.9353 11.7342 -4.4328 25 1 10.0293 12.6013 -3.2309 26 1 11.2590 11.1178 -4.7032 27 1 9.5218 12.5515 -5.6017 28 6 6.1898 9.0801 -2.9527 29 6 3.5558 3.5856 -1.3802 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8339 0.9765 -0.8892 36 1 3.8332 0.9768 0.8908 37 1 5.6624 3.1331 1.1756 38 1 5.8815 2.3038 -0.4002 39 1 5.6854 5.2495 0.2014 40 1 6.5472 4.4224 -1.1259 41 1 3.2006 7.4464 -3.3966 42 1 3.3453 9.1657 -2.9539 43 1 4.4477 7.8281 -5.4693 44 1 3.0999 8.9887 -5.3874 45 1 5.1814 10.1269 -6.0810 46 1 4.6539 10.7101 -4.4843 47 1 9.9380 9.1644 -3.2180 48 1 5.8958 9.9728 -2.4006 49 1 7.1195 8.6846 -2.5435 50 1 3.7649 2.8746 -2.1795 51 1 2.5247 3.9339 -1.4414 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329698767.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:16 Heat of formation + Delta-G solvation = -102.740135 kcal Electronic energy + Delta-G solvation = -30327.756103 eV Core-core repulsion = 26227.650176 eV Total energy + Delta-G solvation = -4100.105927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65237 -39.15257 -38.15805 -37.33358 -36.64914 -33.36910 -32.83143 -31.69456 -31.21840 -29.73953 -29.35241 -26.92318 -25.30113 -24.90883 -23.35857 -23.08758 -21.96507 -21.57680 -20.64536 -19.55591 -18.48529 -17.36540 -16.92923 -16.67766 -16.49736 -16.15850 -15.83041 -15.51061 -15.05617 -14.57302 -14.50606 -14.07068 -13.78780 -13.74651 -13.57771 -13.28490 -13.06530 -12.92675 -12.82560 -12.65339 -12.56527 -12.30393 -12.05142 -11.87865 -11.72692 -11.59853 -11.49665 -11.22888 -11.13666 -10.99073 -10.92094 -10.63311 -10.45654 -10.25277 -9.98999 -9.95811 -9.79905 -9.16638 -9.05630 -8.76474 -8.52951 -8.36279 -7.77089 -6.01628 -4.09279 1.85074 2.59981 3.23143 3.30155 3.37623 3.41077 3.68202 3.86318 4.22662 4.34737 4.42328 4.57324 4.66225 4.72299 4.82353 4.96382 4.99698 5.00135 5.11057 5.22701 5.28764 5.32845 5.34121 5.51310 5.54416 5.65372 5.69776 5.73283 5.74816 5.81613 5.85960 5.97343 6.00427 6.15197 6.27623 6.42357 6.54583 6.64511 6.75330 6.83551 6.90630 7.01840 7.10957 7.21139 7.33077 7.60593 7.83055 7.96488 7.99119 8.21009 8.37398 8.63105 8.95003 9.56107 11.03691 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.002362 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.439291 B =11851.906066 C =12891.360704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.388 6.388 4 C 0.075 3.925 5 C -0.101 4.101 6 H 0.096 0.904 7 C -0.127 4.127 8 C 0.108 3.892 9 N -0.595 5.595 10 C 0.524 3.476 11 O -0.516 6.516 12 C 0.497 3.503 13 O -0.521 6.521 14 N -0.568 5.568 15 C 0.050 3.950 16 C -0.127 4.127 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.029 0.971 20 C -0.519 4.519 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.882 5.882 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.110 3.890 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.143 0.857 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.049 0.951 47 H 0.263 0.737 48 H 0.047 0.953 49 H 0.123 0.877 50 H 0.071 0.929 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.046 -18.176 8.642 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.308 6.308 4 C -0.002 4.002 5 C -0.120 4.120 6 H 0.114 0.886 7 C -0.165 4.165 8 C -0.014 4.014 9 N -0.329 5.329 10 C 0.310 3.690 11 O -0.394 6.394 12 C 0.278 3.722 13 O -0.398 6.398 14 N -0.300 5.300 15 C -0.072 4.072 16 C -0.165 4.165 17 C -0.151 4.151 18 C 0.022 3.978 19 H 0.047 0.953 20 C -0.557 4.557 21 H 0.078 0.922 22 C -0.141 4.141 23 N -0.520 5.520 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 C -0.010 4.010 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.159 0.841 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.141 0.859 50 H 0.089 0.911 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.960 -18.025 8.616 23.814 hybrid contribution 0.974 0.564 -0.194 1.142 sum -11.986 -17.462 8.422 22.793 Atomic orbital electron populations 1.21749 0.93696 1.02214 1.03305 1.22454 0.95692 0.83738 1.00020 1.87914 1.20960 1.26458 1.95432 1.22411 0.81475 0.95662 1.00651 1.22365 0.96490 0.94954 0.98220 0.88589 1.22756 0.94263 0.97491 1.02031 1.22179 0.89606 0.96359 0.93263 1.48335 1.23928 1.18083 1.42579 1.20557 0.86638 0.82439 0.79382 1.90303 1.31656 1.76988 1.40445 1.19653 0.87002 0.83579 0.81934 1.90732 1.27321 1.79727 1.42024 1.48444 1.15318 1.16388 1.49834 1.23067 0.85560 1.05137 0.93420 1.21850 0.99287 0.99661 0.95722 1.21667 0.96805 0.96232 1.00381 1.19066 0.91045 0.96943 0.90772 0.95265 1.21103 0.94242 0.98900 1.41475 0.92246 1.25063 0.98570 0.95717 0.94720 1.69883 1.18672 1.25547 1.37851 0.86558 0.80922 0.81864 0.78542 1.20734 1.21159 1.19853 1.22613 0.89984 0.87640 1.00753 1.22316 0.94738 0.87380 0.96411 0.91840 0.91694 0.91158 0.93368 0.93472 0.92795 0.92636 0.89417 0.90223 0.90184 0.89618 0.84069 0.92758 0.92376 0.92296 0.93087 0.93270 0.92683 0.93448 0.85878 0.91094 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.06 0.38 6.66 37.16 0.25 0.63 16 3 O -0.39 -3.54 10.31 -35.23 -0.36 -3.90 16 4 C 0.07 0.56 5.39 37.16 0.20 0.76 16 5 C -0.10 -0.88 3.30 -88.47 -0.29 -1.17 16 6 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 7 C -0.13 -1.05 6.42 -24.89 -0.16 -1.21 16 8 C 0.11 1.36 5.49 -3.06 -0.02 1.35 16 9 N -0.60 -8.64 3.33 -171.02 -0.57 -9.21 16 10 C 0.52 9.40 7.81 -11.58 -0.09 9.31 16 11 O -0.52 -9.59 13.36 5.49 0.07 -9.52 16 12 C 0.50 10.40 7.70 -11.59 -0.09 10.32 16 13 O -0.52 -11.84 13.62 5.50 0.07 -11.77 16 14 N -0.57 -12.26 2.97 -173.00 -0.51 -12.77 16 15 C 0.05 0.93 6.27 -3.71 -0.02 0.91 16 16 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 17 C -0.11 -2.39 5.10 -26.69 -0.14 -2.53 16 18 C 0.04 1.03 2.26 -91.42 -0.21 0.83 16 19 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.52 -14.18 8.52 -34.44 -0.29 -14.47 16 21 H 0.06 1.59 7.75 -52.49 -0.41 1.19 16 22 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 23 N -0.88 -25.49 11.39 55.43 0.63 -24.86 16 24 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.11 2.71 5.43 -3.48 -0.02 2.69 16 29 C 0.11 1.31 6.34 -2.53 -0.02 1.29 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.05 0.36 7.96 -51.93 -0.41 -0.05 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.08 1.07 7.73 -51.93 -0.40 0.67 16 40 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 41 H 0.14 2.61 3.78 -56.77 -0.21 2.39 16 42 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.12 3.46 5.19 -51.93 -0.27 3.19 16 50 H 0.07 0.78 7.91 -51.93 -0.41 0.37 16 51 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -31.41 398.64 -9.27 -40.68 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.82 Total: 1.81 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.77 Total: 7.28 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.45 Total: -46.84 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.21 Total: -25.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.41 -9.27 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329698767.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.064 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds