Wall clock time and date at job start Tue Mar 31 2020 22:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46857 * 2 1 4 4 C 1.42908 * 113.99624 * 184.05452 * 3 2 1 5 5 H 1.08998 * 109.47036 * 30.91433 * 4 3 2 6 6 C 1.50694 * 109.46935 * 270.91335 * 4 3 2 7 7 O 1.21284 * 120.00237 * 0.02562 * 6 4 3 8 8 N 1.34779 * 119.99569 * 179.97438 * 6 4 3 9 9 C 1.46511 * 119.99680 * 180.02562 * 8 6 4 10 10 C 1.50692 * 109.46912 * 180.02562 * 9 8 6 11 11 C 1.29456 * 117.69671 * 94.97887 * 10 9 8 12 12 C 1.49932 * 123.63263 * 180.61882 * 11 10 9 13 13 N 1.47007 * 109.38467 * 349.42801 * 12 11 10 14 14 C 1.36930 * 121.37569 * 222.82956 * 13 12 11 15 15 H 1.07996 * 120.00598 * 156.06556 * 14 13 12 16 16 C 1.38820 * 119.99968 * 336.06578 * 14 13 12 17 17 N 1.31627 * 119.99715 * 331.96068 * 16 14 13 18 18 Si 1.86798 * 120.00017 * 152.23669 * 16 14 13 19 19 H 1.48500 * 109.46999 * 179.72133 * 18 16 14 20 20 H 1.48495 * 109.47222 * 299.72461 * 18 16 14 21 21 H 1.48499 * 109.47052 * 59.72547 * 18 16 14 22 22 C 1.47340 * 117.24864 * 42.56431 * 13 12 11 23 23 C 1.49973 * 117.69597 * 274.99974 * 10 9 8 24 24 C 1.52997 * 109.46944 * 150.91307 * 4 3 2 25 25 H 1.09005 * 110.80126 * 68.22655 * 24 4 3 26 26 C 1.54808 * 110.91074 * 304.59447 * 24 4 3 27 27 C 1.54100 * 104.19056 * 220.92038 * 26 24 4 28 28 O 1.43740 * 107.28974 * 357.97073 * 27 26 24 29 29 C 1.44379 * 106.97965 * 26.51423 * 28 27 26 30 30 H 1.09004 * 109.47295 * 60.00105 * 1 2 3 31 31 H 1.09003 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47201 * 300.00324 * 1 2 3 33 33 H 1.09003 * 109.46698 * 239.99826 * 2 1 3 34 34 H 1.08997 * 109.46944 * 120.00023 * 2 1 3 35 35 H 0.96998 * 120.00273 * 0.02562 * 8 6 4 36 36 H 1.08996 * 109.46898 * 60.00292 * 9 8 6 37 37 H 1.08999 * 109.46751 * 300.00416 * 9 8 6 38 38 H 1.08002 * 118.17172 * 0.88195 * 11 10 9 39 39 H 1.08996 * 109.50245 * 229.39587 * 12 11 10 40 40 H 1.08995 * 109.31278 * 109.34844 * 12 11 10 41 41 H 0.97001 * 119.99883 * 354.47844 * 17 16 14 42 42 H 1.09004 * 109.77889 * 58.07487 * 22 13 12 43 43 H 1.08996 * 109.77895 * 178.88727 * 22 13 12 44 44 H 1.09006 * 109.31392 * 40.71975 * 23 10 9 45 45 H 1.08999 * 109.31575 * 281.29560 * 23 10 9 46 46 H 1.08995 * 110.48814 * 339.60009 * 26 24 4 47 47 H 1.09003 * 110.48618 * 102.24293 * 26 24 4 48 48 H 1.08997 * 109.87886 * 117.39345 * 27 26 24 49 49 H 1.09002 * 109.87805 * 238.54895 * 27 26 24 50 50 H 1.09000 * 110.61691 * 201.43931 * 29 28 27 51 51 H 1.09003 * 110.61849 * 78.43986 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4278 1.4612 -0.0923 5 1 3.8228 0.6239 -0.6678 6 6 4.0239 1.4451 1.2916 7 8 3.3026 1.3455 2.2615 8 7 5.3588 1.5405 1.4515 9 6 5.9384 1.5244 2.7970 10 6 7.4373 1.6446 2.6996 11 6 7.9547 2.8260 2.8114 12 6 9.4261 3.1000 2.7221 13 7 10.1619 1.8277 2.7490 14 6 11.3003 1.6781 3.4950 15 1 11.6084 0.6950 3.8191 16 6 12.0585 2.7901 3.8350 17 7 12.0560 3.8514 3.0563 18 14 13.0884 2.7775 5.3934 19 1 13.8039 4.0721 5.5243 20 1 12.2039 2.5795 6.5696 21 1 14.0762 1.6708 5.3249 22 6 9.6205 0.7182 1.9447 23 6 8.2246 0.3873 2.4795 24 6 3.7900 2.7745 -0.7885 25 1 3.5338 3.6285 -0.1614 26 6 3.0991 2.8764 -2.1701 27 6 4.1802 3.4762 -3.0899 28 8 5.3393 3.7291 -2.2782 29 6 5.2912 2.8008 -1.1735 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9357 1.6198 0.6758 36 1 5.6800 0.5887 3.2926 37 1 5.5436 2.3616 3.3726 38 1 7.2899 3.6597 2.9825 39 1 9.7334 3.7165 3.5668 40 1 9.6392 3.6246 1.7907 41 1 11.5894 3.8280 2.2062 42 1 9.5531 1.0191 0.8992 43 1 10.2673 -0.1543 2.0372 44 1 7.7029 -0.2434 1.7597 45 1 8.3181 -0.1494 3.4236 46 1 2.8035 1.8883 -2.5226 47 1 2.2342 3.5377 -2.1162 48 1 4.4287 2.7682 -3.8804 49 1 3.8213 4.4092 -3.5244 50 1 5.8946 3.1630 -0.3412 51 1 5.6240 1.8117 -1.4884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333380050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:37 Heat of formation + Delta-G solvation = -92.385199 kcal Electronic energy + Delta-G solvation = -30534.771386 eV Core-core repulsion = 26435.114483 eV Total energy + Delta-G solvation = -4099.656903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78587 -39.23831 -38.28156 -37.55879 -35.18096 -33.84050 -32.93757 -31.26726 -31.04428 -30.11468 -29.65153 -27.43175 -26.16406 -24.18327 -23.25281 -22.89974 -22.81425 -21.35275 -21.09871 -20.70735 -18.26932 -17.92147 -17.45647 -16.75388 -16.39336 -16.25718 -15.73982 -15.50240 -15.40780 -15.05769 -14.69416 -14.37284 -14.18480 -13.92223 -13.79155 -13.63066 -13.53375 -13.14992 -12.88781 -12.74206 -12.55185 -12.22660 -12.15028 -12.01380 -11.79618 -11.76103 -11.61815 -11.52500 -11.49914 -11.02666 -10.88593 -10.70979 -10.65436 -10.51790 -10.05557 -10.04104 -10.02721 -9.54891 -9.44820 -9.13572 -8.55136 -8.24116 -6.98626 -6.12809 -3.22347 2.31704 2.40621 3.02412 3.33846 3.48703 3.53000 3.59705 3.70553 4.15032 4.29496 4.42040 4.56043 4.56991 4.61464 4.70771 4.75155 4.82610 4.87939 4.97508 5.02919 5.07751 5.18048 5.21155 5.31324 5.33802 5.37345 5.43139 5.50229 5.60044 5.61631 5.64988 5.71399 5.79177 5.80098 5.89329 5.98707 6.15046 6.22721 6.33524 6.47294 6.56409 6.60918 6.68707 6.81468 6.82474 7.06911 7.37742 7.44787 7.91922 8.05441 8.51443 9.04203 9.79800 10.25027 11.17714 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.002596 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.708717 B =10783.872149 C =11892.134888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.087 3.913 5 H 0.088 0.912 6 C 0.486 3.514 7 O -0.526 6.526 8 N -0.722 5.722 9 C 0.155 3.845 10 C -0.159 4.159 11 C -0.122 4.122 12 C 0.173 3.827 13 N -0.599 5.599 14 C -0.349 4.349 15 H 0.059 0.941 16 C -0.023 4.023 17 N -0.913 5.913 18 Si 1.061 2.939 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.146 3.854 23 C -0.092 4.092 24 C -0.117 4.117 25 H 0.101 0.899 26 C -0.139 4.139 27 C 0.042 3.958 28 O -0.367 6.367 29 C 0.045 3.955 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.036 0.964 41 H 0.268 0.732 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.103 0.897 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 -5.933 -11.933 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.269 6.269 4 C 0.025 3.975 5 H 0.106 0.894 6 C 0.271 3.729 7 O -0.402 6.402 8 N -0.377 5.377 9 C 0.033 3.967 10 C -0.160 4.160 11 C -0.143 4.143 12 C 0.047 3.953 13 N -0.324 5.324 14 C -0.478 4.478 15 H 0.077 0.923 16 C -0.225 4.225 17 N -0.553 5.553 18 Si 0.890 3.110 19 H -0.211 1.211 20 H -0.221 1.221 21 H -0.220 1.220 22 C 0.020 3.980 23 C -0.131 4.131 24 C -0.136 4.136 25 H 0.119 0.881 26 C -0.177 4.177 27 C -0.035 4.035 28 O -0.285 6.285 29 C -0.032 4.032 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.121 0.879 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.211 -4.781 -10.273 23.171 hybrid contribution -0.831 -1.385 -1.175 1.998 sum -21.042 -6.166 -11.448 24.736 Atomic orbital electron populations 1.21710 0.93321 1.02310 1.03213 1.22619 0.96008 0.83353 1.00262 1.87985 1.17743 1.26921 1.94278 1.21905 0.83818 0.98927 0.92836 0.89410 1.21310 0.82604 0.76982 0.92046 1.90715 1.60082 1.48236 1.41118 1.46458 1.06710 1.74388 1.10147 1.20486 0.90992 1.02195 0.83029 1.20537 0.92709 0.96127 1.06586 1.22959 0.99420 0.96148 0.95756 1.19819 0.85661 0.89545 1.00250 1.44169 1.26703 1.08395 1.53091 1.19917 1.01965 0.96100 1.29814 0.92339 1.25790 0.98415 0.94291 1.04051 1.70812 1.40911 1.32852 1.10762 0.83585 0.75797 0.75679 0.75893 1.21080 1.22079 1.21974 1.20943 0.91936 0.92224 0.92941 1.20773 0.97220 0.94214 1.00860 1.22789 0.96237 0.97144 0.97424 0.88110 1.22864 0.99087 1.02560 0.93177 1.23253 0.85336 1.01043 0.93821 1.88962 1.44116 1.57352 1.38072 1.23747 0.94591 0.94433 0.90383 0.91933 0.91020 0.91551 0.93390 0.92730 0.76449 0.91349 0.91351 0.88354 0.89729 0.94622 0.92089 0.96083 0.92230 0.92768 0.91458 0.90337 0.89734 0.92127 0.89560 0.87902 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.70 16 2 C 0.05 0.48 6.44 37.16 0.24 0.72 16 3 O -0.35 -3.86 9.11 -55.14 -0.50 -4.36 16 4 C 0.09 0.86 2.07 -27.89 -0.06 0.80 16 5 H 0.09 0.67 7.59 -51.93 -0.39 0.27 16 6 C 0.49 6.29 7.18 -10.99 -0.08 6.21 16 7 O -0.53 -8.90 16.39 -14.36 -0.24 -9.14 16 8 N -0.72 -8.75 5.14 -61.47 -0.32 -9.06 16 9 C 0.16 2.21 5.66 -5.19 -0.03 2.18 16 10 C -0.16 -2.58 5.22 -100.99 -0.53 -3.11 16 11 C -0.12 -2.20 9.46 -35.97 -0.34 -2.54 16 12 C 0.17 3.89 4.91 -5.29 -0.03 3.86 16 13 N -0.60 -14.59 2.89 -173.90 -0.50 -15.09 16 14 C -0.35 -9.59 9.56 -15.06 -0.14 -9.73 16 15 H 0.06 1.61 7.97 -52.49 -0.42 1.20 16 16 C -0.02 -0.65 4.66 -17.42 -0.08 -0.73 16 17 N -0.91 -26.86 12.57 55.49 0.70 -26.17 16 18 Si 1.06 24.99 30.00 -169.99 -5.10 19.89 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.15 2.92 6.58 -3.53 -0.02 2.89 16 23 C -0.09 -1.52 5.95 -28.18 -0.17 -1.69 16 24 C -0.12 -1.06 2.85 -88.61 -0.25 -1.31 16 25 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 26 C -0.14 -1.02 6.20 -25.20 -0.16 -1.18 16 27 C 0.04 0.33 7.70 37.73 0.29 0.62 16 28 O -0.37 -4.06 11.52 -35.23 -0.41 -4.46 16 29 C 0.05 0.42 5.43 38.21 0.21 0.63 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.33 7.99 -51.93 -0.42 -0.09 16 34 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.40 4.20 5.50 -40.82 -0.22 3.98 16 36 H 0.07 1.00 8.11 -51.93 -0.42 0.57 16 37 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 38 H 0.10 1.59 7.73 -52.49 -0.41 1.18 16 39 H 0.08 2.15 6.80 -51.93 -0.35 1.79 16 40 H 0.04 0.83 7.47 -51.93 -0.39 0.45 16 41 H 0.27 7.90 6.57 -40.82 -0.27 7.63 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 0.50 7.86 -51.93 -0.41 0.09 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.10 1.02 6.89 -51.93 -0.36 0.67 16 51 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -33.10 402.64 -9.78 -42.88 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.72 Total: 2.52 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.76 Total: -3.07 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.12 Total: -50.33 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -1.14 Total: -17.96 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.10 Total: 19.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.10 -9.78 -42.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333380050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.505 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds