Wall clock time and date at job start Tue Mar 31 2020 22:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.46857 * 2 1 4 4 C 1.42908 * 113.99624 * 184.05452 * 3 2 1 5 5 H 1.08998 * 109.47036 * 30.91433 * 4 3 2 6 6 C 1.50694 * 109.46935 * 270.91335 * 4 3 2 7 7 O 1.21284 * 120.00237 * 0.02562 * 6 4 3 8 8 N 1.34779 * 119.99569 * 179.97438 * 6 4 3 9 9 C 1.46511 * 119.99680 * 180.02562 * 8 6 4 10 10 C 1.50692 * 109.46912 * 180.02562 * 9 8 6 11 11 C 1.29456 * 117.69671 * 94.97887 * 10 9 8 12 12 C 1.49932 * 123.63263 * 180.61882 * 11 10 9 13 13 N 1.47007 * 109.38467 * 349.42801 * 12 11 10 14 14 C 1.36930 * 121.37569 * 222.82956 * 13 12 11 15 15 H 1.07996 * 120.00598 * 156.06556 * 14 13 12 16 16 C 1.38820 * 119.99968 * 336.06578 * 14 13 12 17 17 N 1.31627 * 119.99715 * 331.96068 * 16 14 13 18 18 Si 1.86798 * 120.00017 * 152.23669 * 16 14 13 19 19 H 1.48500 * 109.46999 * 179.72133 * 18 16 14 20 20 H 1.48495 * 109.47222 * 299.72461 * 18 16 14 21 21 H 1.48499 * 109.47052 * 59.72547 * 18 16 14 22 22 C 1.47340 * 117.24864 * 42.56431 * 13 12 11 23 23 C 1.49973 * 117.69597 * 274.99974 * 10 9 8 24 24 C 1.52997 * 109.46944 * 150.91307 * 4 3 2 25 25 H 1.09005 * 110.80126 * 68.22655 * 24 4 3 26 26 C 1.54808 * 110.91074 * 304.59447 * 24 4 3 27 27 C 1.54100 * 104.19056 * 220.92038 * 26 24 4 28 28 O 1.43740 * 107.28974 * 357.97073 * 27 26 24 29 29 C 1.44379 * 106.97965 * 26.51423 * 28 27 26 30 30 H 1.09004 * 109.47295 * 60.00105 * 1 2 3 31 31 H 1.09003 * 109.47463 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47201 * 300.00324 * 1 2 3 33 33 H 1.09003 * 109.46698 * 239.99826 * 2 1 3 34 34 H 1.08997 * 109.46944 * 120.00023 * 2 1 3 35 35 H 0.96998 * 120.00273 * 0.02562 * 8 6 4 36 36 H 1.08996 * 109.46898 * 60.00292 * 9 8 6 37 37 H 1.08999 * 109.46751 * 300.00416 * 9 8 6 38 38 H 1.08002 * 118.17172 * 0.88195 * 11 10 9 39 39 H 1.08996 * 109.50245 * 229.39587 * 12 11 10 40 40 H 1.08995 * 109.31278 * 109.34844 * 12 11 10 41 41 H 0.97001 * 119.99883 * 354.47844 * 17 16 14 42 42 H 1.09004 * 109.77889 * 58.07487 * 22 13 12 43 43 H 1.08996 * 109.77895 * 178.88727 * 22 13 12 44 44 H 1.09006 * 109.31392 * 40.71975 * 23 10 9 45 45 H 1.08999 * 109.31575 * 281.29560 * 23 10 9 46 46 H 1.08995 * 110.48814 * 339.60009 * 26 24 4 47 47 H 1.09003 * 110.48618 * 102.24293 * 26 24 4 48 48 H 1.08997 * 109.87886 * 117.39345 * 27 26 24 49 49 H 1.09002 * 109.87805 * 238.54895 * 27 26 24 50 50 H 1.09000 * 110.61691 * 201.43931 * 29 28 27 51 51 H 1.09003 * 110.61849 * 78.43986 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4278 1.4612 -0.0923 5 1 3.8228 0.6239 -0.6678 6 6 4.0239 1.4451 1.2916 7 8 3.3026 1.3455 2.2615 8 7 5.3588 1.5405 1.4515 9 6 5.9384 1.5244 2.7970 10 6 7.4373 1.6446 2.6996 11 6 7.9547 2.8260 2.8114 12 6 9.4261 3.1000 2.7221 13 7 10.1619 1.8277 2.7490 14 6 11.3003 1.6781 3.4950 15 1 11.6084 0.6950 3.8191 16 6 12.0585 2.7901 3.8350 17 7 12.0560 3.8514 3.0563 18 14 13.0884 2.7775 5.3934 19 1 13.8039 4.0721 5.5243 20 1 12.2039 2.5795 6.5696 21 1 14.0762 1.6708 5.3249 22 6 9.6205 0.7182 1.9447 23 6 8.2246 0.3873 2.4795 24 6 3.7900 2.7745 -0.7885 25 1 3.5338 3.6285 -0.1614 26 6 3.0991 2.8764 -2.1701 27 6 4.1802 3.4762 -3.0899 28 8 5.3393 3.7291 -2.2782 29 6 5.2912 2.8008 -1.1735 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9357 1.6198 0.6758 36 1 5.6800 0.5887 3.2926 37 1 5.5436 2.3616 3.3726 38 1 7.2899 3.6597 2.9825 39 1 9.7334 3.7165 3.5668 40 1 9.6392 3.6246 1.7907 41 1 11.5894 3.8280 2.2062 42 1 9.5531 1.0191 0.8992 43 1 10.2673 -0.1543 2.0372 44 1 7.7029 -0.2434 1.7597 45 1 8.3181 -0.1494 3.4236 46 1 2.8035 1.8883 -2.5226 47 1 2.2342 3.5377 -2.1162 48 1 4.4287 2.7682 -3.8804 49 1 3.8213 4.4092 -3.5244 50 1 5.8946 3.1630 -0.3412 51 1 5.6240 1.8117 -1.4884 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333380050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:36 Heat of formation + Delta-G solvation = -113.370929 kcal Electronic energy + Delta-G solvation = -30535.681395 eV Core-core repulsion = 26435.114483 eV Total energy + Delta-G solvation = -4100.566913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67278 -40.14129 -39.60486 -38.56056 -36.61130 -34.99469 -34.15012 -32.63855 -31.89361 -31.55698 -30.62900 -28.70498 -27.34316 -25.69742 -24.50110 -24.00421 -23.49778 -22.87114 -22.02229 -21.60142 -19.86100 -19.18208 -18.32586 -17.87155 -17.51815 -17.06968 -16.71927 -16.58307 -16.38937 -16.11062 -15.99288 -15.57102 -15.49167 -15.38695 -15.14560 -14.87178 -14.58144 -14.30248 -14.08254 -13.84195 -13.47988 -13.45235 -13.30727 -13.07415 -12.88102 -12.71299 -12.60929 -12.53193 -12.37509 -12.27590 -12.19312 -12.15537 -11.89665 -11.74476 -11.66314 -11.48501 -11.32227 -10.71533 -10.51789 -10.45071 -10.23442 -9.79987 -8.99195 -8.28976 -5.36032 1.00786 1.39162 1.58129 1.65190 1.84108 2.09710 2.51348 2.64850 2.90561 3.18151 3.40677 3.45266 3.59930 3.67839 3.75851 3.84523 3.87290 3.91742 4.11345 4.15417 4.22023 4.27686 4.30715 4.39944 4.40644 4.46544 4.52645 4.60299 4.63674 4.65847 4.75154 4.76075 4.81985 4.86604 4.91147 4.97252 5.01365 5.02264 5.03029 5.13048 5.21308 5.24896 5.28300 5.61067 5.79397 5.83439 5.96827 5.97375 6.37841 6.40291 7.01246 7.05843 7.75463 8.21973 8.99504 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.002596 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.708717 B =10783.872149 C =11892.134888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.369 6.369 4 C 0.094 3.906 5 H 0.121 0.879 6 C 0.486 3.514 7 O -0.569 6.569 8 N -0.711 5.711 9 C 0.165 3.835 10 C -0.131 4.131 11 C -0.141 4.141 12 C 0.183 3.817 13 N -0.620 5.620 14 C -0.354 4.354 15 H 0.054 0.946 16 C -0.075 4.075 17 N -0.941 5.941 18 Si 1.110 2.890 19 H -0.292 1.292 20 H -0.283 1.283 21 H -0.275 1.275 22 C 0.140 3.860 23 C -0.085 4.085 24 C -0.113 4.113 25 H 0.080 0.920 26 C -0.131 4.131 27 C 0.038 3.962 28 O -0.396 6.396 29 C 0.043 3.957 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.255 0.745 42 H 0.030 0.970 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.288 -7.914 -13.141 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.287 6.287 4 C 0.032 3.968 5 H 0.138 0.862 6 C 0.272 3.728 7 O -0.448 6.448 8 N -0.367 5.367 9 C 0.042 3.958 10 C -0.132 4.132 11 C -0.161 4.161 12 C 0.058 3.942 13 N -0.345 5.345 14 C -0.484 4.484 15 H 0.072 0.928 16 C -0.272 4.272 17 N -0.583 5.583 18 Si 0.934 3.066 19 H -0.219 1.219 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.015 3.985 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.099 0.901 26 C -0.169 4.169 27 C -0.038 4.038 28 O -0.316 6.316 29 C -0.033 4.033 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.248 0.752 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.075 0.925 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.109 0.891 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.778 -6.792 -11.520 25.556 hybrid contribution -0.395 -0.839 -0.862 1.266 sum -22.174 -7.631 -12.381 26.518 Atomic orbital electron populations 1.21729 0.92462 1.03437 1.02723 1.22804 0.96831 0.82524 1.00712 1.87983 1.18162 1.28327 1.94189 1.21952 0.83518 1.00369 0.90920 0.86194 1.21943 0.82232 0.75604 0.92981 1.90701 1.60979 1.50259 1.42819 1.46300 1.06852 1.73933 1.09624 1.20259 0.89149 1.02222 0.84219 1.20634 0.93879 0.95213 1.03469 1.22662 0.96790 0.97835 0.98836 1.19531 0.88352 0.88415 0.97941 1.44429 1.26406 1.09871 1.53807 1.20159 1.02723 0.95852 1.29631 0.92836 1.27064 0.99817 0.94162 1.06120 1.70918 1.42566 1.33878 1.10922 0.82922 0.74955 0.75765 0.72909 1.21857 1.20966 1.20031 1.21139 0.93626 0.90710 0.93023 1.20709 0.95373 0.94714 1.01577 1.22694 0.96495 0.96022 0.98037 0.90103 1.22837 0.98716 1.03564 0.91744 1.23433 0.84569 1.01968 0.93876 1.88931 1.45542 1.58239 1.38841 1.23804 0.94455 0.95171 0.89898 0.91084 0.89119 0.93343 0.90591 0.94491 0.75218 0.90925 0.91941 0.86573 0.93503 0.96390 0.93521 0.95178 0.92520 0.88854 0.91784 0.88577 0.89618 0.90524 0.88982 0.89146 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 10.28 71.98 0.74 -1.12 16 2 C 0.05 0.73 6.44 71.98 0.46 1.19 16 3 O -0.37 -7.33 9.11 -129.94 -1.18 -8.51 16 4 C 0.09 1.61 2.07 29.85 0.06 1.68 16 5 H 0.12 1.31 7.59 -2.39 -0.02 1.29 16 6 C 0.49 11.72 7.18 87.65 0.63 12.35 16 7 O -0.57 -18.78 16.39 16.00 0.26 -18.52 16 8 N -0.71 -15.66 5.14 -466.78 -2.40 -18.06 16 9 C 0.16 4.36 5.66 85.63 0.48 4.84 16 10 C -0.13 -4.04 5.22 -15.14 -0.08 -4.11 16 11 C -0.14 -5.05 9.46 26.98 0.26 -4.79 16 12 C 0.18 8.52 4.91 85.30 0.42 8.94 16 13 N -0.62 -30.56 2.89 -704.11 -2.03 -32.59 16 14 C -0.35 -19.71 9.56 84.04 0.80 -18.90 16 15 H 0.05 2.97 7.97 -2.91 -0.02 2.95 16 16 C -0.07 -4.26 4.66 84.86 0.40 -3.87 16 17 N -0.94 -57.16 12.57 21.66 0.27 -56.89 16 18 Si 1.11 51.04 30.00 68.60 2.06 53.09 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 C 0.14 5.45 6.58 86.25 0.57 6.01 16 23 C -0.09 -2.62 5.95 29.65 0.18 -2.44 16 24 C -0.11 -1.83 2.85 -9.49 -0.03 -1.86 16 25 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 26 C -0.13 -1.57 6.20 31.58 0.20 -1.38 16 27 C 0.04 0.50 7.70 72.35 0.56 1.06 16 28 O -0.40 -8.20 11.52 -148.98 -1.72 -9.91 16 29 C 0.04 0.72 5.43 72.66 0.39 1.12 16 30 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.74 7.99 -2.39 -0.02 0.72 16 34 H 0.04 0.69 8.08 -2.39 -0.02 0.68 16 35 H 0.41 7.50 5.50 -92.71 -0.51 6.99 16 36 H 0.07 1.93 8.11 -2.39 -0.02 1.91 16 37 H 0.06 1.78 7.78 -2.39 -0.02 1.76 16 38 H 0.12 3.72 7.73 -2.91 -0.02 3.70 16 39 H 0.05 2.50 6.80 -2.39 -0.02 2.48 16 40 H 0.02 0.90 7.47 -2.39 -0.02 0.88 16 41 H 0.25 15.70 6.57 -92.71 -0.61 15.09 16 42 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 44 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.10 0.84 7.86 -2.39 -0.02 0.82 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 48 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.09 1.69 6.89 -2.39 -0.02 1.68 16 51 H 0.09 1.06 7.84 -2.39 -0.02 1.04 16 Total: -1.00 -74.04 402.64 1.86 -72.18 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.56 Total: 20.50 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 6.04 Total: -1.28 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.16 Total: -107.54 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -2.64 Total: -36.94 kcal Atomic # 14 Polarization: 51.04 SS G_CDS: 2.06 Total: 53.09 kcal Total: -74.04 1.86 -72.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333380050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.194 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds