Wall clock time and date at job start Tue Mar 31 2020 22:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42908 * 109.47166 * 2 1 4 4 C 1.42898 * 113.99744 * 184.22925 * 3 2 1 5 5 H 1.08997 * 109.47470 * 30.52079 * 4 3 2 6 6 C 1.50702 * 109.46932 * 270.51732 * 4 3 2 7 7 O 1.21278 * 120.00228 * 0.02562 * 6 4 3 8 8 N 1.34783 * 119.99936 * 180.27455 * 6 4 3 9 9 C 1.46497 * 120.00041 * 179.72725 * 8 6 4 10 10 C 1.50692 * 109.47213 * 180.02562 * 9 8 6 11 11 C 1.29461 * 117.69462 * 94.73810 * 10 9 8 12 12 C 1.50311 * 123.65449 * 180.58661 * 11 10 9 13 13 N 1.47006 * 109.20464 * 349.50109 * 12 11 10 14 14 C 1.36935 * 121.37584 * 222.71622 * 13 12 11 15 15 H 1.07999 * 120.00064 * 155.98660 * 14 13 12 16 16 C 1.38809 * 120.00434 * 335.98474 * 14 13 12 17 17 N 1.31622 * 119.99804 * 344.75903 * 16 14 13 18 18 Si 1.86796 * 120.00192 * 164.75789 * 16 14 13 19 19 H 1.48492 * 109.47148 * 60.00337 * 18 16 14 20 20 H 1.48502 * 109.47066 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47196 * 300.00028 * 18 16 14 22 22 C 1.47334 * 117.24608 * 42.74242 * 13 12 11 23 23 C 1.49965 * 117.69697 * 275.00263 * 10 9 8 24 24 C 1.53004 * 109.46730 * 150.52468 * 4 3 2 25 25 H 1.09005 * 110.45287 * 172.64491 * 24 4 3 26 26 C 1.54509 * 110.51052 * 295.24856 * 24 4 3 27 27 C 1.54472 * 104.06290 * 118.64659 * 26 24 4 28 28 O 1.44432 * 104.80204 * 23.98057 * 27 26 24 29 29 C 1.44426 * 105.27525 * 319.48416 * 28 27 26 30 30 H 1.09005 * 109.46988 * 60.00420 * 1 2 3 31 31 H 1.08998 * 109.47097 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47664 * 300.00539 * 1 2 3 33 33 H 1.08997 * 109.47632 * 239.99987 * 2 1 3 34 34 H 1.09005 * 109.46988 * 119.99580 * 2 1 3 35 35 H 0.96995 * 119.99930 * 359.73269 * 8 6 4 36 36 H 1.09001 * 109.47306 * 300.00832 * 9 8 6 37 37 H 1.09004 * 109.46816 * 60.00061 * 9 8 6 38 38 H 1.08000 * 118.17292 * 0.86525 * 11 10 9 39 39 H 1.09000 * 109.67342 * 229.48250 * 12 11 10 40 40 H 1.09004 * 109.33599 * 109.32037 * 12 11 10 41 41 H 0.97000 * 120.00557 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.77730 * 178.61559 * 22 13 12 43 43 H 1.08998 * 109.78151 * 57.80851 * 22 13 12 44 44 H 1.09000 * 109.31389 * 281.29030 * 23 10 9 45 45 H 1.09004 * 109.31454 * 40.71641 * 23 10 9 46 46 H 1.09004 * 110.50955 * 237.29120 * 26 24 4 47 47 H 1.08999 * 110.50744 * 359.86085 * 26 24 4 48 48 H 1.08999 * 110.37184 * 142.80542 * 27 26 24 49 49 H 1.09004 * 110.37761 * 265.03745 * 27 26 24 50 50 H 1.09000 * 110.37391 * 281.68451 * 29 28 27 51 51 H 1.08994 * 110.37097 * 159.34089 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4275 1.4613 -0.0963 5 1 3.8215 0.6209 -0.6678 6 6 4.0268 1.4536 1.2864 7 8 3.3078 1.3594 2.2585 8 7 5.3616 1.5566 1.4429 9 6 5.9437 1.5552 2.7873 10 6 7.4419 1.6814 2.6860 11 6 7.9536 2.8668 2.7815 12 6 9.4272 3.1480 2.6869 13 7 10.1656 1.8776 2.7286 14 6 11.3064 1.7401 3.4735 15 1 11.6165 0.7621 3.8107 16 6 12.0642 2.8577 3.7953 17 7 11.8718 3.9904 3.1531 18 14 13.3570 2.7541 5.1396 19 1 14.3672 1.7281 4.7769 20 1 14.0231 4.0730 5.2884 21 1 12.7087 2.3789 6.4219 22 6 9.6279 0.7585 1.9353 23 6 8.2346 0.4259 2.4757 24 6 3.7875 2.7709 -0.8008 25 1 4.8642 2.9374 -0.7683 26 6 3.2860 2.7550 -2.2622 27 6 2.2886 3.9327 -2.3296 28 8 2.6930 4.8201 -1.2643 29 6 3.0338 3.9563 -0.1581 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.9366 1.6317 0.6655 36 1 5.5462 2.3956 3.3563 37 1 5.6905 0.6227 3.2918 38 1 7.2849 3.6994 2.9425 39 1 9.7353 3.7760 3.5229 40 1 9.6372 3.6608 1.7483 41 1 12.4010 4.7715 3.3781 42 1 10.2790 -0.1101 2.0343 43 1 9.5572 1.0497 0.8873 44 1 8.3324 -0.1019 3.4243 45 1 7.7145 -0.2136 1.7625 46 1 4.1144 2.9162 -2.9520 47 1 2.7838 1.8132 -2.4834 48 1 2.3624 4.4377 -3.2927 49 1 1.2711 3.5782 -2.1647 50 1 2.1308 3.6056 0.3417 51 1 3.6799 4.4794 0.5468 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333380051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:40 Heat of formation + Delta-G solvation = -92.235483 kcal Electronic energy + Delta-G solvation = -30335.276056 eV Core-core repulsion = 26235.625645 eV Total energy + Delta-G solvation = -4099.650411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.69907 -39.12150 -38.06494 -37.41394 -34.99088 -33.69406 -32.77642 -31.21776 -30.96379 -29.87253 -29.58423 -27.58466 -26.07605 -24.06935 -23.37049 -22.97159 -22.75200 -21.28013 -21.11833 -20.31099 -18.18400 -17.61435 -17.30713 -16.43134 -16.36720 -15.82191 -15.72712 -15.42766 -15.20519 -15.04591 -14.83610 -14.36083 -14.07908 -13.86069 -13.64286 -13.57268 -13.42371 -13.02722 -12.87126 -12.54651 -12.30537 -12.18690 -12.09592 -12.01737 -11.73128 -11.61765 -11.54303 -11.41071 -11.10169 -11.01659 -10.93834 -10.76720 -10.61173 -10.44776 -10.36557 -9.94238 -9.87920 -9.68116 -9.43096 -9.04727 -8.72287 -8.10677 -6.79684 -5.83945 -3.23217 2.43097 2.51754 3.13557 3.36371 3.42325 3.43456 3.49582 3.75864 4.12971 4.38199 4.45809 4.55316 4.58987 4.71946 4.81831 4.86576 5.00238 5.07505 5.08347 5.11252 5.12885 5.29899 5.35211 5.37354 5.43122 5.49364 5.53105 5.64018 5.66232 5.67835 5.76109 5.79744 5.83313 5.88427 6.00761 6.10177 6.26980 6.37143 6.46710 6.56994 6.67140 6.73560 6.80575 7.11295 7.20291 7.26647 7.48426 7.67972 7.77460 8.13956 8.33621 9.15008 9.77566 10.35248 11.26480 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018518 B = 0.002381 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.657173 B =11757.624742 C =12602.431732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.083 3.917 5 H 0.090 0.910 6 C 0.486 3.514 7 O -0.529 6.529 8 N -0.718 5.718 9 C 0.157 3.843 10 C -0.168 4.168 11 C -0.122 4.122 12 C 0.194 3.806 13 N -0.595 5.595 14 C -0.248 4.248 15 H 0.068 0.932 16 C 0.000 4.000 17 N -0.910 5.910 18 Si 0.906 3.094 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.144 3.856 23 C -0.090 4.090 24 C -0.117 4.117 25 H 0.102 0.898 26 C -0.145 4.145 27 C 0.048 3.952 28 O -0.375 6.375 29 C 0.053 3.947 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.255 0.745 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.061 0.939 50 H 0.077 0.923 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.169 -5.954 -11.768 24.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.021 3.979 5 H 0.108 0.892 6 C 0.270 3.730 7 O -0.405 6.405 8 N -0.371 5.371 9 C 0.035 3.965 10 C -0.169 4.169 11 C -0.143 4.143 12 C 0.069 3.931 13 N -0.318 5.318 14 C -0.377 4.377 15 H 0.086 0.914 16 C -0.198 4.198 17 N -0.555 5.555 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.018 3.982 23 C -0.129 4.129 24 C -0.136 4.136 25 H 0.120 0.880 26 C -0.182 4.182 27 C -0.029 4.029 28 O -0.293 6.293 29 C -0.024 4.024 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.079 0.921 50 H 0.096 0.904 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.717 -5.481 -11.006 24.090 hybrid contribution 1.149 -0.464 0.422 1.309 sum -19.567 -5.945 -10.584 23.027 Atomic orbital electron populations 1.21707 0.93415 1.02266 1.03174 1.22603 0.95916 0.83413 1.00235 1.87966 1.17998 1.26800 1.94256 1.21944 0.83658 0.99287 0.92976 0.89200 1.21283 0.82668 0.77050 0.91967 1.90712 1.60263 1.48527 1.40949 1.46276 1.06627 1.74093 1.10098 1.20465 0.91225 1.01869 0.82932 1.20477 0.92483 0.96150 1.07758 1.23305 1.00407 0.95822 0.94767 1.19769 0.83263 0.88759 1.01340 1.44111 1.26688 1.08052 1.52945 1.19132 0.99555 0.93950 1.25074 0.91403 1.24992 0.98145 0.96855 0.99855 1.69989 1.42819 1.01697 1.40990 0.86314 0.81246 0.76763 0.82133 1.20914 1.21592 1.21046 1.20945 0.91940 0.92052 0.93305 1.20754 0.97273 0.94228 1.00632 1.22715 1.01882 0.93626 0.95392 0.87987 1.22941 0.99881 1.00088 0.95327 1.23354 0.97549 0.90276 0.91688 1.89130 1.86805 1.29874 1.23509 1.23415 0.99528 0.89551 0.89864 0.91991 0.91079 0.91566 0.93428 0.92753 0.76492 0.91596 0.91640 0.88744 0.88778 0.94104 0.93490 0.92452 0.95966 0.91767 0.92979 0.90195 0.90173 0.89298 0.92050 0.90449 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.15 0.38 -0.70 16 2 C 0.05 0.48 6.46 37.15 0.24 0.72 16 3 O -0.35 -3.76 7.95 -55.14 -0.44 -4.20 16 4 C 0.08 0.80 2.05 -27.88 -0.06 0.74 16 5 H 0.09 0.66 7.73 -51.93 -0.40 0.26 16 6 C 0.49 6.18 6.84 -10.98 -0.08 6.10 16 7 O -0.53 -8.83 16.45 -14.35 -0.24 -9.06 16 8 N -0.72 -8.62 5.40 -61.47 -0.33 -8.95 16 9 C 0.16 2.26 5.66 -5.20 -0.03 2.23 16 10 C -0.17 -2.74 5.23 -101.00 -0.53 -3.27 16 11 C -0.12 -2.23 9.47 -35.79 -0.34 -2.57 16 12 C 0.19 4.44 5.22 -5.11 -0.03 4.42 16 13 N -0.59 -14.44 3.01 -173.69 -0.52 -14.96 16 14 C -0.25 -6.65 9.71 -15.06 -0.15 -6.80 16 15 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 16 C 0.00 -0.01 5.01 -17.43 -0.09 -0.10 16 17 N -0.91 -25.77 11.06 55.49 0.61 -25.16 16 18 Si 0.91 21.45 29.58 -169.99 -5.03 16.42 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.14 2.85 6.58 -3.53 -0.02 2.83 16 23 C -0.09 -1.49 5.95 -28.19 -0.17 -1.65 16 24 C -0.12 -1.05 2.92 -89.05 -0.26 -1.31 16 25 H 0.10 0.84 7.43 -51.93 -0.39 0.46 16 26 C -0.14 -1.06 6.56 -25.17 -0.17 -1.23 16 27 C 0.05 0.41 7.63 37.93 0.29 0.70 16 28 O -0.37 -4.48 11.65 -35.23 -0.41 -4.89 16 29 C 0.05 0.60 6.73 37.93 0.26 0.85 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.32 7.99 -51.93 -0.41 -0.09 16 34 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 35 H 0.40 4.10 7.84 -40.82 -0.32 3.78 16 36 H 0.07 1.00 7.79 -51.93 -0.40 0.59 16 37 H 0.07 0.97 8.11 -51.93 -0.42 0.55 16 38 H 0.09 1.56 7.74 -52.49 -0.41 1.15 16 39 H 0.09 2.43 6.40 -51.93 -0.33 2.10 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.51 7.66 -51.93 -0.40 0.11 16 48 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.96 6.87 -51.93 -0.36 0.61 16 51 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -31.85 406.11 -9.85 -41.69 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.87 Total: 2.03 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -0.74 Total: 0.95 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.24 Total: -49.07 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -1.09 Total: -18.15 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.85 -9.85 -41.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333380051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.541 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds