Wall clock time and date at job start Tue Mar 31 2020 21:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47237 * 2 1 4 4 C 1.42902 * 113.99855 * 179.97438 * 3 2 1 5 5 C 1.53038 * 109.45883 * 270.06778 * 4 3 2 6 6 C 1.53197 * 109.31257 * 178.61663 * 5 4 3 7 7 N 1.46927 * 108.77542 * 54.63095 * 6 5 4 8 8 C 1.34773 * 120.62820 * 126.41252 * 7 6 5 9 9 O 1.21353 * 120.00033 * 354.93187 * 8 7 6 10 10 C 1.49446 * 120.00106 * 174.92379 * 8 7 6 11 11 O 1.21354 * 119.99725 * 85.48391 * 10 8 7 12 12 N 1.34778 * 120.00391 * 265.49175 * 10 8 7 13 13 C 1.46926 * 120.62858 * 4.77534 * 12 10 8 14 14 C 1.52762 * 109.00350 * 233.58593 * 13 12 10 15 15 C 1.53048 * 109.38419 * 305.58509 * 14 13 12 16 16 C 1.50694 * 109.46275 * 181.26502 * 15 14 13 17 17 H 1.07995 * 119.99880 * 239.93829 * 16 15 14 18 18 C 1.37879 * 120.00044 * 59.92463 * 16 15 14 19 19 N 1.31514 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99849 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46629 * 90.00767 * 20 18 16 22 22 H 1.48503 * 109.46833 * 210.00597 * 20 18 16 23 23 H 1.48500 * 109.47177 * 330.00468 * 20 18 16 24 24 C 1.53031 * 109.53593 * 61.24021 * 15 14 13 25 25 C 1.46922 * 120.63178 * 185.04966 * 12 10 8 26 26 C 1.46928 * 118.73904 * 306.39505 * 7 6 5 27 27 C 1.53042 * 109.45932 * 149.99714 * 4 3 2 28 28 H 1.08999 * 109.46783 * 60.00034 * 1 2 3 29 29 H 1.09002 * 109.47467 * 300.00575 * 1 2 3 30 30 H 1.08994 * 109.47555 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46684 * 119.99564 * 2 1 3 32 32 H 1.08998 * 109.46982 * 239.99450 * 2 1 3 33 33 H 1.08994 * 109.45799 * 30.02356 * 4 3 2 34 34 H 1.08999 * 109.49822 * 298.56694 * 5 4 3 35 35 H 1.08998 * 109.50312 * 58.66256 * 5 4 3 36 36 H 1.08999 * 109.58163 * 294.84392 * 6 5 4 37 37 H 1.08993 * 109.70140 * 174.49115 * 6 5 4 38 38 H 1.08998 * 109.58737 * 353.41206 * 13 12 10 39 39 H 1.09001 * 109.59110 * 113.84608 * 13 12 10 40 40 H 1.09009 * 109.56256 * 185.55433 * 14 13 12 41 41 H 1.08998 * 109.36583 * 65.49831 * 14 13 12 42 42 H 1.09002 * 109.45469 * 301.22433 * 15 14 13 43 43 H 0.96998 * 120.00214 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.50325 * 178.68132 * 24 15 14 45 45 H 1.09009 * 109.52485 * 58.60823 * 24 15 14 46 46 H 1.08992 * 109.59352 * 246.15577 * 25 12 10 47 47 H 1.09000 * 109.58675 * 6.44422 * 25 12 10 48 48 H 1.09006 * 109.58422 * 293.82092 * 26 7 6 49 49 H 1.09000 * 109.69907 * 173.46674 * 26 7 6 50 50 H 1.08991 * 109.49877 * 301.33910 * 27 4 3 51 51 H 1.09007 * 109.49224 * 61.43354 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.9387 1.4988 1.4438 6 6 5.4683 1.5848 1.4406 7 7 5.8753 2.7382 0.6264 8 6 6.6976 3.6791 1.1313 9 8 7.0354 3.6282 2.2958 10 6 7.1935 4.7852 0.2572 11 8 6.5228 5.7850 0.1046 12 7 8.3854 4.6722 -0.3618 13 6 9.1607 3.4275 -0.2716 14 6 10.5690 3.7533 0.2226 15 6 11.1917 4.8178 -0.6837 16 6 12.5925 5.1181 -0.2165 17 1 12.8563 6.1192 0.0909 18 6 13.5374 4.1146 -0.1810 19 7 13.2164 2.8955 -0.5555 20 14 15.2742 4.4871 0.3975 21 1 15.3616 4.2810 1.8655 22 1 16.2294 3.5796 -0.2875 23 1 15.6120 5.8966 0.0744 24 6 10.3503 6.0947 -0.6262 25 6 8.9368 5.7936 -1.1345 26 6 5.3692 2.8460 -0.7487 27 6 3.8409 2.7459 -0.7210 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.8633 0.6016 -0.5133 34 1 3.5263 2.3708 1.9512 35 1 3.6264 0.5932 1.9638 36 1 5.8846 0.6719 1.0149 37 1 5.8313 1.7111 2.4605 38 1 8.6778 2.7461 0.4289 39 1 9.2202 2.9619 -1.2553 40 1 11.1817 2.8520 0.1992 41 1 10.5154 4.1309 1.2436 42 1 11.2223 4.4490 -1.7090 43 1 13.8812 2.1896 -0.5310 44 1 10.8071 6.8602 -1.2535 45 1 10.2987 6.4510 0.4028 46 1 8.9777 5.5249 -2.1900 47 1 8.3049 6.6722 -1.0053 48 1 5.7776 2.0359 -1.3529 49 1 5.6650 3.8047 -1.1749 50 1 3.4589 2.7279 -1.7416 51 1 3.4294 3.6063 -0.1931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346244993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:30 Heat of formation + Delta-G solvation = -123.283448 kcal Electronic energy + Delta-G solvation = -30720.939182 eV Core-core repulsion = 26619.942431 eV Total energy + Delta-G solvation = -4100.996752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95005 -39.43543 -38.40111 -36.94663 -36.70368 -33.62328 -32.84549 -31.68210 -31.28684 -30.74957 -30.23581 -26.88923 -25.63177 -24.31954 -23.48299 -22.98263 -22.59741 -22.07202 -20.82221 -19.51400 -18.49330 -17.82501 -17.21118 -16.78100 -16.34429 -16.23701 -15.93524 -15.13287 -15.04377 -14.91043 -14.60373 -14.44435 -14.18512 -13.84976 -13.58449 -13.33553 -13.15996 -13.00524 -12.82720 -12.74929 -12.62366 -12.39173 -12.31312 -12.25747 -11.75804 -11.61343 -11.55442 -11.43761 -11.19649 -11.14231 -10.96030 -10.88083 -10.69217 -10.45065 -10.13102 -9.82569 -9.69045 -9.34505 -9.26163 -9.02843 -8.97137 -8.43707 -8.22128 -6.06685 -4.12433 2.20924 2.28568 2.69548 3.22978 3.27509 3.34442 3.37719 3.48901 4.24388 4.35112 4.38951 4.48549 4.64408 4.69048 4.72421 4.86903 4.93878 4.97852 5.00479 5.11872 5.22835 5.28663 5.39668 5.42740 5.45230 5.50052 5.53730 5.61467 5.67052 5.72349 5.79428 5.80388 5.92944 5.93257 6.02240 6.18708 6.19823 6.30871 6.55395 6.73641 6.89472 6.93657 6.98611 7.05859 7.18853 7.54562 7.65665 7.80726 7.86382 7.97230 8.10220 8.35816 8.90671 9.52961 10.99116 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.002399 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.267691 B =11668.155221 C =12145.147220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.092 3.908 5 C -0.155 4.155 6 C 0.113 3.887 7 N -0.603 5.603 8 C 0.524 3.476 9 O -0.509 6.509 10 C 0.511 3.489 11 O -0.533 6.533 12 N -0.578 5.578 13 C 0.103 3.897 14 C -0.125 4.125 15 C 0.049 3.951 16 C -0.511 4.511 17 H 0.056 0.944 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.125 4.125 25 C 0.110 3.890 26 C 0.109 3.891 27 C -0.130 4.130 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.085 0.915 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.069 -8.243 -2.347 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.301 6.301 4 C 0.034 3.966 5 C -0.194 4.194 6 C -0.010 4.010 7 N -0.340 5.340 8 C 0.307 3.693 9 O -0.382 6.382 10 C 0.293 3.707 11 O -0.410 6.410 12 N -0.312 5.312 13 C -0.018 4.018 14 C -0.164 4.164 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.074 0.926 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.163 4.163 25 C -0.011 4.011 26 C -0.014 4.014 27 C -0.168 4.168 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.104 0.896 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.243 -7.750 -1.819 22.686 hybrid contribution 1.147 -0.235 0.419 1.244 sum -20.096 -7.984 -1.400 21.669 Atomic orbital electron populations 1.21745 0.93775 1.02202 1.03169 1.22510 0.95590 0.83929 1.00032 1.87943 1.20770 1.26356 1.95052 1.22069 0.81157 0.98151 0.95232 1.22433 0.95495 1.03715 0.97747 1.21637 0.93869 0.87627 0.97824 1.48138 1.47811 1.23321 1.14696 1.20436 0.78852 0.81677 0.88294 1.90797 1.57582 1.73456 1.16385 1.20052 0.82641 0.87839 0.80180 1.90763 1.57000 1.31067 1.62184 1.48342 1.17896 1.16630 1.48282 1.22044 0.94939 0.83648 1.01197 1.21975 0.91067 1.04359 0.98965 1.18646 0.93068 0.89451 0.95791 1.21182 0.94581 0.95493 1.43700 0.92593 1.24960 0.98730 0.95125 0.95157 1.69821 1.34257 1.00934 1.48111 0.86596 0.84383 0.78222 0.78828 1.20701 1.21254 1.19935 1.22042 0.92723 1.00972 1.00606 1.21858 0.96319 0.88504 0.94410 1.21781 0.93481 1.03859 0.82247 1.21965 0.94853 0.98028 1.01961 0.91848 0.91856 0.91158 0.93399 0.93363 0.91782 0.90357 0.90376 0.90691 0.88182 0.91943 0.91117 0.87467 0.93882 0.95288 0.92948 0.91665 0.92693 0.91343 0.90000 0.90333 0.88878 0.89610 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.39 6.47 37.16 0.24 0.63 16 3 O -0.38 -3.62 9.99 -35.23 -0.35 -3.97 16 4 C 0.09 0.78 2.57 -26.69 -0.07 0.71 16 5 C -0.16 -1.38 5.69 -26.61 -0.15 -1.53 16 6 C 0.11 1.15 6.44 -3.71 -0.02 1.13 16 7 N -0.60 -7.64 2.97 -173.28 -0.52 -8.16 16 8 C 0.52 8.87 5.47 -11.59 -0.06 8.81 16 9 O -0.51 -10.10 16.51 5.49 0.09 -10.01 16 10 C 0.51 9.27 5.60 -11.59 -0.06 9.20 16 11 O -0.53 -10.62 16.34 5.49 0.09 -10.53 16 12 N -0.58 -10.30 2.98 -173.54 -0.52 -10.82 16 13 C 0.10 1.86 6.33 -3.93 -0.02 1.83 16 14 C -0.13 -2.78 5.14 -26.83 -0.14 -2.92 16 15 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 16 C -0.51 -13.47 8.56 -34.44 -0.29 -13.77 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -24.15 11.31 55.43 0.63 -23.52 16 20 Si 0.89 20.80 29.54 -169.99 -5.02 15.77 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.13 -2.50 5.30 -26.61 -0.14 -2.64 16 25 C 0.11 1.92 6.42 -3.71 -0.02 1.89 16 26 C 0.11 1.11 6.32 -3.71 -0.02 1.09 16 27 C -0.13 -1.19 5.73 -26.61 -0.15 -1.34 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.29 7.84 -51.93 -0.41 -0.11 16 32 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 1.17 7.00 -51.93 -0.36 0.81 16 38 H 0.06 1.07 6.31 -51.93 -0.33 0.74 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.11 2.63 6.03 -51.92 -0.31 2.32 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.08 1.40 7.03 -51.93 -0.37 1.03 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.09 1.08 6.24 -51.93 -0.32 0.76 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -31.02 398.86 -9.21 -40.23 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.79 Total: -0.07 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.83 Total: 5.07 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.41 Total: -42.50 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.17 Total: -24.51 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.02 -9.21 -40.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346244993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.054 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds