Wall clock time and date at job start Tue Mar 31 2020 21:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47237 * 2 1 4 4 C 1.42902 * 113.99855 * 179.97438 * 3 2 1 5 5 C 1.53038 * 109.45883 * 270.06778 * 4 3 2 6 6 C 1.53197 * 109.31257 * 178.61663 * 5 4 3 7 7 N 1.46927 * 108.77542 * 54.63095 * 6 5 4 8 8 C 1.34773 * 120.62820 * 126.41252 * 7 6 5 9 9 O 1.21353 * 120.00033 * 354.93187 * 8 7 6 10 10 C 1.49446 * 120.00106 * 174.92379 * 8 7 6 11 11 O 1.21354 * 119.99725 * 85.48391 * 10 8 7 12 12 N 1.34778 * 120.00391 * 265.49175 * 10 8 7 13 13 C 1.46926 * 120.62858 * 4.77534 * 12 10 8 14 14 C 1.52762 * 109.00350 * 233.58593 * 13 12 10 15 15 C 1.53048 * 109.38419 * 305.58509 * 14 13 12 16 16 C 1.50694 * 109.46275 * 181.26502 * 15 14 13 17 17 H 1.07995 * 119.99880 * 239.93829 * 16 15 14 18 18 C 1.37879 * 120.00044 * 59.92463 * 16 15 14 19 19 N 1.31514 * 120.00234 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99849 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.46629 * 90.00767 * 20 18 16 22 22 H 1.48503 * 109.46833 * 210.00597 * 20 18 16 23 23 H 1.48500 * 109.47177 * 330.00468 * 20 18 16 24 24 C 1.53031 * 109.53593 * 61.24021 * 15 14 13 25 25 C 1.46922 * 120.63178 * 185.04966 * 12 10 8 26 26 C 1.46928 * 118.73904 * 306.39505 * 7 6 5 27 27 C 1.53042 * 109.45932 * 149.99714 * 4 3 2 28 28 H 1.08999 * 109.46783 * 60.00034 * 1 2 3 29 29 H 1.09002 * 109.47467 * 300.00575 * 1 2 3 30 30 H 1.08994 * 109.47555 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46684 * 119.99564 * 2 1 3 32 32 H 1.08998 * 109.46982 * 239.99450 * 2 1 3 33 33 H 1.08994 * 109.45799 * 30.02356 * 4 3 2 34 34 H 1.08999 * 109.49822 * 298.56694 * 5 4 3 35 35 H 1.08998 * 109.50312 * 58.66256 * 5 4 3 36 36 H 1.08999 * 109.58163 * 294.84392 * 6 5 4 37 37 H 1.08993 * 109.70140 * 174.49115 * 6 5 4 38 38 H 1.08998 * 109.58737 * 353.41206 * 13 12 10 39 39 H 1.09001 * 109.59110 * 113.84608 * 13 12 10 40 40 H 1.09009 * 109.56256 * 185.55433 * 14 13 12 41 41 H 1.08998 * 109.36583 * 65.49831 * 14 13 12 42 42 H 1.09002 * 109.45469 * 301.22433 * 15 14 13 43 43 H 0.96998 * 120.00214 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.50325 * 178.68132 * 24 15 14 45 45 H 1.09009 * 109.52485 * 58.60823 * 24 15 14 46 46 H 1.08992 * 109.59352 * 246.15577 * 25 12 10 47 47 H 1.09000 * 109.58675 * 6.44422 * 25 12 10 48 48 H 1.09006 * 109.58422 * 293.82092 * 26 7 6 49 49 H 1.09000 * 109.69907 * 173.46674 * 26 7 6 50 50 H 1.08991 * 109.49877 * 301.33910 * 27 4 3 51 51 H 1.09007 * 109.49224 * 61.43354 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.9387 1.4988 1.4438 6 6 5.4683 1.5848 1.4406 7 7 5.8753 2.7382 0.6264 8 6 6.6976 3.6791 1.1313 9 8 7.0354 3.6282 2.2958 10 6 7.1935 4.7852 0.2572 11 8 6.5228 5.7850 0.1046 12 7 8.3854 4.6722 -0.3618 13 6 9.1607 3.4275 -0.2716 14 6 10.5690 3.7533 0.2226 15 6 11.1917 4.8178 -0.6837 16 6 12.5925 5.1181 -0.2165 17 1 12.8563 6.1192 0.0909 18 6 13.5374 4.1146 -0.1810 19 7 13.2164 2.8955 -0.5555 20 14 15.2742 4.4871 0.3975 21 1 15.3616 4.2810 1.8655 22 1 16.2294 3.5796 -0.2875 23 1 15.6120 5.8966 0.0744 24 6 10.3503 6.0947 -0.6262 25 6 8.9368 5.7936 -1.1345 26 6 5.3692 2.8460 -0.7487 27 6 3.8409 2.7459 -0.7210 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.8633 0.6016 -0.5133 34 1 3.5263 2.3708 1.9512 35 1 3.6264 0.5932 1.9638 36 1 5.8846 0.6719 1.0149 37 1 5.8313 1.7111 2.4605 38 1 8.6778 2.7461 0.4289 39 1 9.2202 2.9619 -1.2553 40 1 11.1817 2.8520 0.1992 41 1 10.5154 4.1309 1.2436 42 1 11.2223 4.4490 -1.7090 43 1 13.8812 2.1896 -0.5310 44 1 10.8071 6.8602 -1.2535 45 1 10.2987 6.4510 0.4028 46 1 8.9777 5.5249 -2.1900 47 1 8.3049 6.6722 -1.0053 48 1 5.7776 2.0359 -1.3529 49 1 5.6650 3.8047 -1.1749 50 1 3.4589 2.7279 -1.7416 51 1 3.4294 3.6063 -0.1931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346244993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:29 Heat of formation + Delta-G solvation = -142.008827 kcal Electronic energy + Delta-G solvation = -30721.751176 eV Core-core repulsion = 26619.942431 eV Total energy + Delta-G solvation = -4101.808745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21883 -40.50654 -39.48039 -38.53507 -37.65132 -35.42944 -33.68494 -33.11732 -32.37120 -31.87065 -31.37991 -28.50281 -26.96375 -25.38320 -24.60897 -24.15865 -23.52307 -23.40904 -21.89855 -20.89619 -19.75741 -19.16374 -18.46190 -18.09287 -17.72209 -17.56827 -16.58116 -16.52072 -16.26133 -16.01536 -15.92115 -15.54916 -15.16550 -15.04422 -14.91406 -14.63727 -14.51746 -14.38017 -14.11447 -13.98516 -13.64871 -13.34531 -13.29178 -13.23098 -12.94766 -12.90102 -12.82637 -12.68924 -12.47996 -12.31050 -12.17429 -12.13812 -11.96794 -11.80579 -11.55554 -11.49559 -11.05817 -10.94900 -10.69974 -10.42583 -10.40905 -10.00947 -9.79219 -8.08947 -6.20819 0.89101 0.99816 1.36132 1.41085 1.43681 1.51896 2.20610 2.44009 2.66510 3.00342 3.18261 3.60798 3.74372 3.91208 3.93669 4.01918 4.19065 4.20250 4.22073 4.27292 4.30454 4.35925 4.36302 4.38918 4.53235 4.54095 4.57193 4.61582 4.70649 4.72393 4.78748 4.87547 4.90820 4.94242 5.03465 5.08900 5.12307 5.16616 5.18286 5.28182 5.32134 5.34417 5.42443 5.62186 5.87657 5.96956 6.05481 6.11799 6.32687 6.38698 6.58006 6.64815 6.87873 7.46630 8.94839 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022921 B = 0.002399 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.267691 B =11668.155221 C =12145.147220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.402 6.402 4 C 0.093 3.907 5 C -0.148 4.148 6 C 0.109 3.891 7 N -0.591 5.591 8 C 0.520 3.480 9 O -0.550 6.550 10 C 0.512 3.488 11 O -0.554 6.554 12 N -0.578 5.578 13 C 0.117 3.883 14 C -0.116 4.116 15 C 0.047 3.953 16 C -0.534 4.534 17 H 0.047 0.953 18 C 0.018 3.982 19 N -0.910 5.910 20 Si 0.947 3.053 21 H -0.282 1.282 22 H -0.281 1.281 23 H -0.272 1.272 24 C -0.117 4.117 25 C 0.115 3.885 26 C 0.105 3.895 27 C -0.125 4.125 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.262 0.738 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.094 0.906 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.079 0.921 50 H 0.104 0.896 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.075 -9.881 -3.658 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.322 6.322 4 C 0.036 3.964 5 C -0.186 4.186 6 C -0.012 4.012 7 N -0.325 5.325 8 C 0.303 3.697 9 O -0.427 6.427 10 C 0.295 3.705 11 O -0.433 6.433 12 N -0.311 5.311 13 C -0.004 4.004 14 C -0.155 4.155 15 C 0.028 3.972 16 C -0.572 4.572 17 H 0.065 0.935 18 C -0.181 4.181 19 N -0.549 5.549 20 Si 0.773 3.227 21 H -0.208 1.208 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.156 4.156 25 C -0.006 4.006 26 C -0.017 4.017 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.130 0.870 49 H 0.097 0.903 50 H 0.122 0.878 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.283 -9.411 -3.163 24.395 hybrid contribution 1.411 0.257 0.814 1.649 sum -20.872 -9.154 -2.348 22.912 Atomic orbital electron populations 1.21771 0.93423 1.03220 1.02468 1.22714 0.95990 0.82929 1.01096 1.87929 1.21093 1.28095 1.95129 1.22071 0.81153 0.98488 0.94704 1.22371 0.94158 1.03660 0.98451 1.21874 0.94945 0.87532 0.96889 1.48281 1.45827 1.22505 1.15861 1.20267 0.79743 0.82147 0.87571 1.90780 1.59667 1.74578 1.17686 1.20307 0.82464 0.87960 0.79758 1.90743 1.57599 1.31988 1.62935 1.48346 1.17807 1.16642 1.48281 1.21858 0.92279 0.83890 1.02397 1.21737 0.93490 1.02781 0.97491 1.18613 0.92515 0.91147 0.94877 1.21535 0.96497 0.95235 1.43981 0.93472 1.25611 1.01933 0.95146 0.95413 1.69915 1.35122 1.01352 1.48545 0.85732 0.80652 0.78134 0.78164 1.20796 1.20635 1.19640 1.21905 0.94123 0.99602 0.99933 1.21849 0.94401 0.88822 0.95505 1.22024 0.94296 1.04441 0.80920 1.21910 0.93834 0.97685 1.02876 0.92365 0.92745 0.89302 0.92500 0.92024 0.89301 0.92749 0.88283 0.87550 0.89966 0.90917 0.88905 0.89788 0.96448 0.96531 0.92882 0.90671 0.94532 0.88812 0.89450 0.87031 0.90279 0.87792 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.54 6.47 71.98 0.47 1.00 16 3 O -0.40 -6.75 9.99 -148.98 -1.49 -8.24 16 4 C 0.09 1.33 2.57 30.62 0.08 1.41 16 5 C -0.15 -2.35 5.69 30.67 0.17 -2.17 16 6 C 0.11 2.03 6.44 86.36 0.56 2.58 16 7 N -0.59 -14.12 2.97 -820.48 -2.44 -16.56 16 8 C 0.52 17.48 5.47 87.27 0.48 17.96 16 9 O -0.55 -22.26 16.51 -3.26 -0.05 -22.31 16 10 C 0.51 18.37 5.60 87.27 0.49 18.85 16 11 O -0.55 -21.99 16.34 -3.26 -0.05 -22.05 16 12 N -0.58 -20.07 2.98 -821.33 -2.45 -22.52 16 13 C 0.12 4.10 6.33 86.22 0.55 4.64 16 14 C -0.12 -5.23 5.14 30.53 0.16 -5.07 16 15 C 0.05 2.20 2.06 -11.52 -0.02 2.18 16 16 C -0.53 -28.55 8.56 25.60 0.22 -28.33 16 17 H 0.05 2.53 7.74 -2.91 -0.02 2.51 16 18 C 0.02 0.97 5.30 84.66 0.45 1.41 16 19 N -0.91 -49.48 11.31 21.45 0.24 -49.24 16 20 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C -0.12 -4.68 5.30 30.67 0.16 -4.51 16 25 C 0.12 3.86 6.42 86.36 0.55 4.42 16 26 C 0.10 1.89 6.32 86.36 0.55 2.43 16 27 C -0.12 -2.02 5.73 30.67 0.18 -1.85 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.52 7.84 -2.38 -0.02 0.50 16 32 H 0.06 0.52 8.09 -2.39 -0.02 0.50 16 33 H 0.09 0.87 7.79 -2.39 -0.02 0.85 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.17 7.84 -2.39 -0.02 1.15 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.88 7.00 -2.39 -0.02 1.87 16 38 H 0.07 2.41 6.31 -2.39 -0.02 2.39 16 39 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.08 4.19 6.03 -2.38 -0.01 4.18 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 44 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.09 2.87 7.03 -2.39 -0.02 2.86 16 48 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 49 H 0.08 1.70 6.24 -2.39 -0.01 1.68 16 50 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -68.54 398.86 2.46 -66.08 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.90 Total: 15.80 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.77 Total: 14.20 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.64 Total: -88.32 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -1.59 Total: -52.60 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -68.54 2.46 -66.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346244993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.924 kcal (2) G-P(sol) polarization free energy of solvation -68.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds