Wall clock time and date at job start Tue Mar 31 2020 21:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46852 * 2 1 4 4 C 1.52998 * 109.47169 * 120.00074 * 2 1 3 5 5 O 1.42906 * 109.46874 * 240.00184 * 2 1 3 6 6 C 1.42893 * 114.00079 * 60.00002 * 5 2 1 7 7 H 1.09001 * 112.85214 * 18.80420 * 6 5 2 8 8 C 1.53782 * 113.61410 * 149.99686 * 6 5 2 9 9 C 1.53782 * 87.08095 * 139.97731 * 8 6 5 10 10 H 1.09007 * 113.60830 * 89.11896 * 9 8 6 11 11 N 1.46498 * 113.61630 * 219.93086 * 9 8 6 12 12 C 1.34775 * 120.00161 * 204.99722 * 11 9 8 13 13 O 1.21351 * 120.00175 * 0.02562 * 12 11 9 14 14 C 1.49451 * 120.00028 * 180.02562 * 12 11 9 15 15 O 1.21352 * 119.99942 * 355.01936 * 14 12 11 16 16 N 1.34781 * 119.99819 * 175.01125 * 14 12 11 17 17 C 1.46504 * 119.99695 * 185.78188 * 16 14 12 18 18 C 1.52994 * 109.46842 * 183.69954 * 17 16 14 19 19 C 1.50701 * 115.55022 * 306.41148 * 18 17 16 20 20 H 1.07998 * 120.00207 * 145.11095 * 19 18 17 21 21 C 1.37880 * 120.00020 * 325.11729 * 19 18 17 22 22 N 1.31509 * 119.99994 * 349.43835 * 21 19 18 23 23 Si 1.86800 * 119.99988 * 169.44477 * 21 19 18 24 24 H 1.48495 * 109.47407 * 59.99782 * 23 21 19 25 25 H 1.48505 * 109.46883 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46764 * 299.99559 * 23 21 19 27 27 C 1.53002 * 117.49819 * 160.74629 * 18 17 16 28 28 C 1.52995 * 117.50247 * 92.08524 * 18 17 16 29 29 C 1.53774 * 87.08066 * 334.57137 * 9 8 6 30 30 H 1.09000 * 109.47512 * 60.00290 * 1 2 3 31 31 H 1.08997 * 109.47377 * 300.00012 * 1 2 3 32 32 H 1.09005 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47496 * 60.00212 * 3 2 1 34 34 H 1.09000 * 109.46691 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47145 * 299.99692 * 3 2 1 36 36 H 1.09005 * 109.47301 * 60.00196 * 4 2 1 37 37 H 1.08999 * 109.46990 * 180.02562 * 4 2 1 38 38 H 1.08997 * 109.46900 * 300.00206 * 4 2 1 39 39 H 1.08997 * 113.61979 * 254.53079 * 8 6 5 40 40 H 1.09005 * 113.61275 * 25.35028 * 8 6 5 41 41 H 0.96998 * 120.00265 * 25.01084 * 11 9 8 42 42 H 0.96992 * 120.00112 * 5.78403 * 16 14 12 43 43 H 1.09000 * 109.47069 * 303.69525 * 17 16 14 44 44 H 1.08994 * 109.47297 * 63.69454 * 17 16 14 45 45 H 0.97003 * 120.00466 * 185.03275 * 22 21 19 46 46 H 1.08998 * 117.49836 * 359.97438 * 27 18 17 47 47 H 1.09009 * 117.49747 * 145.01767 * 27 18 17 48 48 H 1.09008 * 117.50141 * 214.97575 * 28 18 17 49 49 H 1.08997 * 117.49852 * 0.02562 * 28 18 17 50 50 H 1.09007 * 113.61058 * 270.87639 * 29 9 8 51 51 H 1.09000 * 113.61620 * 139.98061 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0063 -0.6736 -1.1669 6 6 1.5846 -0.0773 -2.3951 7 1 1.2522 0.9536 -2.2729 8 6 2.5837 -0.2698 -3.5482 9 6 1.3667 -0.5004 -4.4596 10 1 0.9736 0.4146 -4.9028 11 7 1.5632 -1.5694 -5.4419 12 6 0.8566 -1.5683 -6.5895 13 8 0.0579 -0.6816 -6.8095 14 6 1.0567 -2.6591 -7.5913 15 8 1.9183 -3.4951 -7.4141 16 7 0.2802 -2.7145 -8.6915 17 6 0.3893 -3.8516 -9.6087 18 6 -0.5269 -3.6253 -10.8129 19 6 -1.9673 -3.3257 -10.4864 20 1 -2.5304 -2.6425 -11.1049 21 6 -2.5663 -3.9238 -9.3980 22 7 -1.9576 -4.9056 -8.7695 23 14 -4.2425 -3.3396 -8.8162 24 1 -5.2330 -3.5100 -9.9094 25 1 -4.6634 -4.1384 -7.6372 26 1 -4.1633 -1.9054 -8.4391 27 6 -0.2435 -4.4369 -12.0786 28 6 0.0763 -2.9404 -12.0408 29 6 0.6077 -0.9503 -3.2002 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.6766 1.9564 0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 -1.7490 1.2492 37 1 3.1300 -0.7208 1.2494 38 1 1.6766 -0.2074 2.1392 39 1 3.1477 0.6304 -3.7922 40 1 3.2181 -1.1489 -3.4341 41 1 2.2018 -2.2781 -5.2662 42 1 -0.3509 -2.0014 -8.8761 43 1 1.4204 -3.9460 -9.9494 44 1 0.0923 -4.7645 -9.0926 45 1 -2.4089 -5.3749 -8.0505 46 1 0.5959 -5.1317 -12.0535 47 1 -1.0990 -4.7537 -12.6753 48 1 -0.5688 -2.2733 -12.6128 49 1 1.1261 -2.6514 -11.9909 50 1 0.7008 -2.0161 -2.9917 51 1 -0.4236 -0.5993 -3.1632 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349246884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:58 Heat of formation + Delta-G solvation = -94.909803 kcal Electronic energy + Delta-G solvation = -29776.511865 eV Core-core repulsion = 25676.745487 eV Total energy + Delta-G solvation = -4099.766378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.77064 -40.77068 -39.59112 -38.45976 -38.22942 -35.25512 -34.46705 -34.14014 -33.34311 -28.69003 -28.36968 -28.32158 -27.53341 -26.68635 -26.08289 -23.80324 -22.93526 -21.47097 -21.25766 -21.12020 -20.62269 -19.41897 -18.23893 -17.99521 -17.55253 -16.97673 -16.90338 -16.60217 -16.39446 -15.94342 -15.91119 -15.39872 -15.26667 -15.01858 -14.77408 -14.38667 -14.35079 -14.12711 -13.63289 -13.51655 -13.42842 -13.27714 -13.10805 -12.89134 -12.84314 -12.77331 -12.71918 -12.64205 -12.60754 -12.33024 -12.26435 -12.10523 -12.05583 -11.75903 -11.44680 -11.27692 -11.10168 -10.70350 -10.58591 -10.41626 -10.21882 -10.15858 -9.82804 -8.06790 -6.20553 0.42641 1.39782 1.43631 1.45467 1.49352 2.23258 2.39084 2.62807 2.89368 3.06274 3.42683 3.51619 3.56539 3.68807 3.78771 3.85183 3.93798 3.99982 4.13192 4.21921 4.27501 4.49900 4.61246 4.66084 4.69472 4.70532 4.72725 4.75772 4.81902 4.82733 4.91470 4.92785 4.97129 4.98362 5.00077 5.03157 5.06907 5.18552 5.26596 5.34408 5.36540 5.40463 5.47201 5.56172 5.58990 5.88389 6.05229 6.34554 6.40757 6.53077 6.78088 6.85456 7.10392 7.42099 8.88107 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016707 B = 0.002395 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.526295 B =11689.075458 C =12629.567028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 C -0.176 4.176 4 C -0.138 4.138 5 O -0.377 6.377 6 C 0.075 3.925 7 H 0.111 0.889 8 C -0.130 4.130 9 C 0.113 3.887 10 H 0.117 0.883 11 N -0.677 5.677 12 C 0.514 3.486 13 O -0.544 6.544 14 C 0.491 3.509 15 O -0.563 6.563 16 N -0.655 5.655 17 C 0.170 3.830 18 C 0.002 3.998 19 C -0.507 4.507 20 H 0.058 0.942 21 C 0.039 3.961 22 N -0.892 5.892 23 Si 0.940 3.060 24 H -0.271 1.271 25 H -0.289 1.289 26 H -0.273 1.273 27 C -0.190 4.190 28 C -0.187 4.187 29 C -0.170 4.170 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.418 0.582 42 H 0.410 0.590 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.642 12.153 18.396 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.233 4.233 4 C -0.195 4.195 5 O -0.296 6.296 6 C 0.016 3.984 7 H 0.129 0.871 8 C -0.168 4.168 9 C 0.009 3.991 10 H 0.135 0.865 11 N -0.329 5.329 12 C 0.295 3.705 13 O -0.421 6.421 14 C 0.271 3.729 15 O -0.444 6.444 16 N -0.303 5.303 17 C 0.047 3.953 18 C 0.002 3.998 19 C -0.544 4.544 20 H 0.076 0.924 21 C -0.163 4.163 22 N -0.529 5.529 23 Si 0.766 3.234 24 H -0.196 1.196 25 H -0.215 1.215 26 H -0.198 1.198 27 C -0.229 4.229 28 C -0.224 4.224 29 C -0.209 4.209 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.256 0.744 42 H 0.246 0.754 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.105 0.895 50 H 0.102 0.898 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.767 11.928 18.571 23.749 hybrid contribution -1.338 -0.118 -0.039 1.343 sum 7.430 11.810 18.531 23.197 Atomic orbital electron populations 1.22472 0.95334 1.02419 1.03141 1.21749 0.93484 0.92906 0.86169 1.22443 1.02144 0.95369 1.03353 1.21785 1.01821 1.00589 0.95284 1.88020 1.73902 1.54327 1.13364 1.23324 0.94802 0.97145 0.83082 0.87130 1.23563 0.96261 1.04549 0.92419 1.22516 0.99089 0.91093 0.86439 0.86469 1.45661 1.41590 1.28653 1.17039 1.20178 0.81300 0.85522 0.83508 1.90722 1.35467 1.37890 1.78027 1.20265 0.82911 0.86223 0.83514 1.90661 1.34481 1.42005 1.77236 1.45681 1.38021 1.24700 1.21851 1.20922 0.95315 0.89222 0.89876 1.19243 0.94197 1.00409 0.85971 1.20657 0.95275 1.27115 1.11368 0.92407 1.25497 1.00263 0.94543 0.95991 1.69946 1.38001 1.21083 1.23901 0.85884 0.81073 0.78625 0.77803 1.19607 1.21496 1.19839 1.22934 1.01781 0.93328 1.04843 1.22981 1.00173 0.94839 1.04440 1.24043 0.99845 1.01791 0.95179 0.92356 0.90145 0.92877 0.90113 0.91779 0.91872 0.92714 0.91963 0.89413 0.88127 0.88385 0.74406 0.75375 0.94199 0.89819 0.93034 0.90151 0.90484 0.89847 0.89470 0.89791 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.38 71.98 0.60 -1.76 16 2 C 0.10 1.33 1.11 -10.79 -0.01 1.32 16 3 C -0.18 -1.85 8.38 71.98 0.60 -1.25 16 4 C -0.14 -1.67 8.84 71.98 0.64 -1.04 16 5 O -0.38 -7.02 10.00 -148.98 -1.49 -8.51 16 6 C 0.07 1.24 2.82 31.12 0.09 1.33 16 7 H 0.11 1.46 5.54 -2.39 -0.01 1.45 16 8 C -0.13 -2.12 7.66 31.12 0.24 -1.88 16 9 C 0.11 2.49 4.24 45.52 0.19 2.68 16 10 H 0.12 2.70 7.46 -2.38 -0.02 2.68 16 11 N -0.68 -18.92 5.35 -441.37 -2.36 -21.28 16 12 C 0.51 18.77 7.89 87.27 0.69 19.46 16 13 O -0.54 -21.91 16.09 -3.25 -0.05 -21.96 16 14 C 0.49 20.60 7.88 87.27 0.69 21.29 16 15 O -0.56 -24.98 16.48 -3.25 -0.05 -25.03 16 16 N -0.65 -29.30 5.27 -464.41 -2.45 -31.74 16 17 C 0.17 7.99 4.75 86.38 0.41 8.40 16 18 C 0.00 0.12 2.00 -52.93 -0.11 0.01 16 19 C -0.51 -26.01 8.27 25.60 0.21 -25.80 16 20 H 0.06 2.96 7.84 -2.91 -0.02 2.94 16 21 C 0.04 2.03 5.13 84.66 0.43 2.47 16 22 N -0.89 -48.45 10.75 21.45 0.23 -48.22 16 23 Si 0.94 42.44 29.55 68.60 2.03 44.46 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 27 C -0.19 -8.07 9.96 30.62 0.30 -7.77 16 28 C -0.19 -7.48 9.92 30.62 0.30 -7.18 16 29 C -0.17 -3.56 7.71 31.12 0.24 -3.32 16 30 H 0.06 0.80 7.02 -2.39 -0.02 0.78 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.63 6.24 -2.39 -0.01 0.62 16 36 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.65 8.12 -2.38 -0.02 1.63 16 41 H 0.42 10.83 8.21 -92.71 -0.76 10.07 16 42 H 0.41 18.72 7.41 -92.71 -0.69 18.04 16 43 H 0.04 1.79 8.06 -2.39 -0.02 1.77 16 44 H 0.08 4.49 6.04 -2.39 -0.01 4.48 16 45 H 0.26 13.85 8.32 -92.71 -0.77 13.08 16 46 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 47 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 48 H 0.08 3.23 8.14 -2.38 -0.02 3.21 16 49 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 50 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -61.22 414.00 0.87 -60.35 By element: Atomic # 1 Polarization: 45.47 SS G_CDS: -0.51 Total: 44.96 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 5.53 Total: 6.97 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -4.58 Total: -101.24 kcal Atomic # 8 Polarization: -53.91 SS G_CDS: -1.60 Total: -55.50 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -61.22 0.87 -60.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349246884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.559 kcal (2) G-P(sol) polarization free energy of solvation -61.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds