Wall clock time and date at job start Tue Mar 31 2020 21:18:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.42906 * 109.47133 * 2 1
4 4 C 1.42900 * 113.99889 * 180.02562 * 3 2 1
5 5 C 1.53001 * 109.47120 * 180.02562 * 4 3 2
6 6 C 1.50704 * 115.54878 * 295.52148 * 5 4 3
7 7 O 1.21277 * 119.99995 * 98.11852 * 6 5 4
8 8 N 1.34774 * 119.99554 * 278.11978 * 6 5 4
9 9 C 1.46503 * 119.99548 * 184.74944 * 8 6 5
10 10 C 1.52999 * 109.46740 * 179.97438 * 9 8 6
11 11 H 1.08994 * 110.52492 * 307.78905 * 10 9 8
12 12 C 1.55064 * 110.58337 * 184.99675 * 10 9 8
13 13 C 1.55028 * 102.13067 * 204.93619 * 12 10 9
14 14 C 1.53321 * 103.78563 * 20.86615 * 13 12 10
15 15 C 1.52650 * 115.56307 * 133.64657 * 14 13 12
16 16 N 1.47223 * 87.78206 * 90.03815 * 15 14 13
17 17 C 1.36929 * 135.97028 * 206.40782 * 16 15 14
18 18 H 1.08009 * 119.99855 * 359.44512 * 17 16 15
19 19 C 1.38810 * 120.00456 * 179.44258 * 17 16 15
20 20 N 1.31623 * 120.00271 * 172.38436 * 19 17 16
21 21 Si 1.86803 * 119.99990 * 352.38328 * 19 17 16
22 22 H 1.48490 * 109.47283 * 177.44827 * 21 19 17
23 23 H 1.48500 * 109.46707 * 297.44834 * 21 19 17
24 24 H 1.48500 * 109.46886 * 57.44247 * 21 19 17
25 25 C 1.47223 * 88.06606 * 26.66922 * 16 15 14
26 26 O 1.42832 * 108.32876 * 1.60337 * 14 13 12
27 27 C 1.53001 * 117.51848 * 81.21934 * 5 4 3
28 28 C 1.52996 * 60.00074 * 107.48439 * 27 5 4
29 29 H 1.09001 * 109.47069 * 300.00517 * 1 2 3
30 30 H 1.09008 * 109.46672 * 59.99712 * 1 2 3
31 31 H 1.09002 * 109.47093 * 179.97438 * 1 2 3
32 32 H 1.08995 * 109.47439 * 240.00091 * 2 1 3
33 33 H 1.08999 * 109.47360 * 119.99903 * 2 1 3
34 34 H 1.08996 * 109.47339 * 59.99909 * 4 3 2
35 35 H 1.09005 * 109.46813 * 299.99706 * 4 3 2
36 36 H 0.97000 * 120.00618 * 4.74313 * 8 6 5
37 37 H 1.09002 * 109.47276 * 60.00203 * 9 8 6
38 38 H 1.09003 * 109.47011 * 299.99799 * 9 8 6
39 39 H 1.09008 * 110.86899 * 86.77643 * 12 10 9
40 40 H 1.08996 * 111.05021 * 323.17942 * 12 10 9
41 41 H 1.08997 * 110.56617 * 262.28683 * 13 12 10
42 42 H 1.09005 * 110.68514 * 139.50273 * 13 12 10
43 43 H 1.09004 * 113.49686 * 335.31284 * 15 14 13
44 44 H 1.08998 * 113.55913 * 204.77972 * 15 14 13
45 45 H 0.97002 * 119.99744 * 354.86056 * 20 19 17
46 46 H 1.09002 * 113.50134 * 88.05522 * 25 16 15
47 47 H 1.08990 * 113.50157 * 218.60223 * 25 16 15
48 48 H 1.08998 * 117.49930 * 214.97241 * 27 5 4
49 49 H 1.09000 * 117.50010 * 359.97438 * 27 5 4
50 50 H 1.08999 * 117.49893 * 252.51505 * 28 27 5
51 51 H 1.09001 * 117.52068 * 107.47930 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 -0.0006
5 6 3.8254 2.9384 0.0001
6 6 3.4264 3.7182 -1.2262
7 8 2.4207 4.3958 -1.2134
8 7 4.1874 3.6624 -2.3372
9 6 3.8581 4.4999 -3.4933
10 6 4.8714 4.2470 -4.6113
11 1 5.8891 4.3556 -4.2365
12 6 4.6227 5.2103 -5.8007
13 6 5.2291 4.4226 -6.9903
14 6 5.2472 2.9713 -6.4961
15 6 4.7218 1.9326 -7.4837
16 7 6.0978 1.8022 -7.9906
17 6 6.6803 1.4380 -9.1751
18 1 6.0639 1.1476 -10.0132
19 6 8.0628 1.4420 -9.2990
20 7 8.6281 0.9514 -10.3817
21 14 9.1212 2.1439 -7.9291
22 1 10.5552 1.9751 -8.2755
23 1 8.8193 3.5882 -7.7610
24 1 8.8302 1.4267 -6.6618
25 6 6.5737 2.2285 -6.6642
26 8 4.6758 2.9352 -5.1876
27 6 3.8082 3.6740 1.3416
28 6 5.1417 3.3180 0.6814
29 1 -0.3633 0.5139 0.8899
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 3.8333 0.9767 -0.8908
35 1 3.8340 0.9765 0.8892
36 1 4.9531 3.0679 -2.3714
37 1 3.8926 5.5500 -3.2029
38 1 2.8570 4.2535 -3.8471
39 1 5.1474 6.1542 -5.6522
40 1 3.5566 5.3802 -5.9506
41 1 6.2411 4.7676 -7.2019
42 1 4.6004 4.5178 -7.8756
43 1 4.0258 2.3421 -8.2159
44 1 4.3470 1.0275 -7.0058
45 1 8.0846 0.5198 -11.0594
46 1 6.7020 1.4040 -5.9628
47 1 7.4408 2.8876 -6.7047
48 1 3.5083 4.7219 1.3371
49 1 3.5153 3.1050 2.2239
50 1 5.7264 2.5146 1.1294
51 1 5.7193 4.1314 0.2423
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001484782967.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:18:28
Heat of formation + Delta-G solvation = -36.913960 kcal
Electronic energy + Delta-G solvation = -30126.943594 eV
Core-core repulsion = 26029.692104 eV
Total energy + Delta-G solvation = -4097.251490 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.51714 -40.08294 -38.26575 -37.09697 -36.53645 -34.61938 -32.36685 -32.03172
-31.60795 -29.62900 -27.61251 -27.00726 -25.58170 -24.42027 -23.17922 -22.76444
-22.55225 -21.53772 -21.27540 -19.68378 -19.16105 -17.59269 -17.51879 -16.81072
-16.65747 -16.24003 -16.02525 -15.85257 -15.71071 -15.06198 -14.73538 -14.48135
-14.27051 -13.78938 -13.74717 -13.58559 -13.20070 -13.10633 -12.96287 -12.80426
-12.42782 -12.29962 -12.06685 -11.95071 -11.79779 -11.59681 -11.50849 -11.46327
-11.28056 -11.10756 -10.98115 -10.68666 -10.58686 -10.49286 -10.43431 -9.96584
-9.85827 -9.75860 -9.20197 -9.16696 -8.98724 -8.81360 -7.23250 -6.35792
-3.27921 2.48926 2.83506 3.03792 3.35155 3.38871 3.61050 3.62064
3.79607 4.25965 4.39855 4.51412 4.54965 4.57245 4.65038 4.67884
4.76201 4.82577 4.86149 4.88555 4.96677 5.05221 5.08696 5.10991
5.19642 5.21577 5.33019 5.37697 5.40702 5.44592 5.51556 5.51877
5.56460 5.63990 5.71200 5.78815 5.86083 5.89909 6.10658 6.18391
6.19946 6.26262 6.28461 6.30578 6.33974 6.52521 6.89634 7.00069
7.27976 7.38062 8.11555 8.18625 8.92305 9.44058 10.29071 11.15750
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.013754 B = 0.002589 C = 0.002497
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2035.347024 B =10813.369033 C =11212.159716
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.056 3.944
3 O -0.378 6.378
4 C 0.107 3.893
5 C -0.159 4.159
6 C 0.555 3.445
7 O -0.530 6.530
8 N -0.722 5.722
9 C 0.129 3.871
10 C 0.062 3.938
11 H 0.076 0.924
12 C -0.146 4.146
13 C -0.114 4.114
14 C 0.060 3.940
15 C 0.134 3.866
16 N -0.620 5.620
17 C -0.301 4.301
18 H 0.085 0.915
19 C -0.023 4.023
20 N -0.932 5.932
21 Si 1.069 2.931
22 H -0.295 1.295
23 H -0.294 1.294
24 H -0.288 1.288
25 C 0.092 3.908
26 O -0.355 6.355
27 C -0.135 4.135
28 C -0.155 4.155
29 H 0.062 0.938
30 H 0.064 0.936
31 H 0.070 0.930
32 H 0.049 0.951
33 H 0.047 0.953
34 H 0.059 0.941
35 H 0.059 0.941
36 H 0.405 0.595
37 H 0.079 0.921
38 H 0.078 0.922
39 H 0.081 0.919
40 H 0.080 0.920
41 H 0.080 0.920
42 H 0.083 0.917
43 H 0.051 0.949
44 H 0.046 0.954
45 H 0.261 0.739
46 H 0.050 0.950
47 H 0.049 0.951
48 H 0.103 0.897
49 H 0.105 0.895
50 H 0.106 0.894
51 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.828 4.945 24.264 26.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.020 4.020
3 O -0.298 6.298
4 C 0.030 3.970
5 C -0.162 4.162
6 C 0.340 3.660
7 O -0.405 6.405
8 N -0.373 5.373
9 C 0.006 3.994
10 C 0.004 3.996
11 H 0.094 0.906
12 C -0.184 4.184
13 C -0.152 4.152
14 C 0.019 3.981
15 C 0.007 3.993
16 N -0.350 5.350
17 C -0.427 4.427
18 H 0.102 0.898
19 C -0.222 4.222
20 N -0.575 5.575
21 Si 0.902 3.098
22 H -0.222 1.222
23 H -0.222 1.222
24 H -0.216 1.216
25 C -0.033 4.033
26 O -0.273 6.273
27 C -0.173 4.173
28 C -0.192 4.192
29 H 0.081 0.919
30 H 0.083 0.917
31 H 0.089 0.911
32 H 0.068 0.932
33 H 0.065 0.935
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.239 0.761
37 H 0.098 0.902
38 H 0.096 0.904
39 H 0.099 0.901
40 H 0.098 0.902
41 H 0.099 0.901
42 H 0.101 0.899
43 H 0.069 0.931
44 H 0.064 0.936
45 H 0.071 0.929
46 H 0.068 0.932
47 H 0.067 0.933
48 H 0.121 0.879
49 H 0.123 0.877
50 H 0.125 0.875
51 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -9.120 5.708 24.530 26.786
hybrid contribution -0.930 -0.993 -0.645 1.506
sum -10.050 4.715 23.885 26.339
Atomic orbital electron populations
1.21729 0.93596 1.02161 1.03319 1.22480 0.95860 0.83642 1.00048
1.88007 1.20070 1.26306 1.95368 1.21796 0.82413 0.91855 1.00963
1.21302 1.04535 0.95986 0.94378 1.19281 0.82769 0.80907 0.83009
1.90694 1.24757 1.41609 1.83457 1.45907 1.32396 1.44778 1.14261
1.21432 0.99186 0.94791 0.84035 1.23369 0.98185 0.84567 0.93510
0.90597 1.23144 1.02336 0.98606 0.94298 1.22391 1.02530 0.92225
0.98026 1.23680 0.95981 0.95733 0.82671 1.22367 0.89538 0.95005
0.92395 1.45725 1.01523 1.80805 1.06963 1.20134 0.91869 1.43604
0.87056 0.89764 1.25689 0.93769 1.00340 1.02427 1.70916 1.37335
1.39287 1.09920 0.83737 0.75701 0.75705 0.74619 1.22231 1.22191
1.21558 1.23175 0.95074 0.96309 0.88778 1.88778 1.79500 1.30139
1.28870 1.22947 0.98898 1.01621 0.93798 1.23152 0.89923 1.03782
1.02346 0.91881 0.91687 0.91095 0.93225 0.93484 0.92277 0.92252
0.76076 0.90240 0.90413 0.90066 0.90168 0.90120 0.89857 0.93098
0.93647 0.92851 0.93248 0.93334 0.87891 0.87697 0.87537 0.87662
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16
2 C 0.06 0.50 6.66 37.16 0.25 0.74 16
3 O -0.38 -4.41 10.26 -35.23 -0.36 -4.78 16
4 C 0.11 0.98 5.76 37.16 0.21 1.20 16
5 C -0.16 -1.52 2.13 -155.66 -0.33 -1.86 16
6 C 0.56 7.02 6.90 -10.98 -0.08 6.95 16
7 O -0.53 -8.79 17.03 5.56 0.09 -8.69 16
8 N -0.72 -8.01 5.55 -60.29 -0.33 -8.34 16
9 C 0.13 1.47 5.42 -4.04 -0.02 1.45 16
10 C 0.06 0.75 3.38 -25.64 -0.09 0.66 16
11 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
12 C -0.15 -1.68 6.60 -24.57 -0.16 -1.84 16
13 C -0.11 -1.75 6.46 -25.49 -0.16 -1.91 16
14 C 0.06 1.07 1.66 -90.66 -0.15 0.92 16
15 C 0.13 2.71 8.20 -8.03 -0.07 2.65 16
16 N -0.62 -15.25 3.65 -184.59 -0.67 -15.92 16
17 C -0.30 -8.62 11.07 -15.06 -0.17 -8.78 16
18 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16
19 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16
20 N -0.93 -29.25 13.70 55.49 0.76 -28.49 16
21 Si 1.07 26.50 25.02 -169.99 -4.25 22.25 16
22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
23 H -0.29 -6.80 6.77 56.52 0.38 -6.41 16
24 H -0.29 -6.68 6.29 56.52 0.36 -6.33 16
25 C 0.09 1.97 5.37 -7.88 -0.04 1.93 16
26 O -0.35 -5.59 11.02 -35.23 -0.39 -5.98 16
27 C -0.14 -1.10 9.89 -26.73 -0.26 -1.37 16
28 C -0.15 -1.01 9.93 -26.73 -0.27 -1.28 16
29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
30 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16
31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
35 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16
36 H 0.40 3.88 8.48 -40.82 -0.35 3.54 16
37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16
38 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
39 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16
40 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16
41 H 0.08 1.31 7.82 -51.93 -0.41 0.90 16
42 H 0.08 1.28 7.81 -51.93 -0.41 0.87 16
43 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16
44 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16
45 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16
46 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16
47 H 0.05 1.05 3.99 -51.93 -0.21 0.84 16
48 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16
49 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
50 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16
51 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16
LS Contribution 410.74 15.07 6.19 6.19
Total: -1.00 -35.39 410.74 -9.03 -44.42
By element:
Atomic # 1 Polarization: 10.53 SS G_CDS: -9.01 Total: 1.52 kcal
Atomic # 6 Polarization: -1.12 SS G_CDS: -1.05 Total: -2.18 kcal
Atomic # 7 Polarization: -52.51 SS G_CDS: -0.25 Total: -52.75 kcal
Atomic # 8 Polarization: -18.79 SS G_CDS: -0.66 Total: -19.45 kcal
Atomic # 14 Polarization: 26.50 SS G_CDS: -4.25 Total: 22.25 kcal
Total LS contribution 6.19 Total: 6.19 kcal
Total: -35.39 -9.03 -44.42 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001484782967.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.508 kcal
(2) G-P(sol) polarization free energy of solvation -35.390 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.882 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds