Wall clock time and date at job start Tue Mar 31 2020 22:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47279 * 2 1 4 4 C 1.42906 * 113.99681 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47425 * 30.00435 * 4 3 2 6 6 C 1.50704 * 109.47251 * 270.00094 * 4 3 2 7 7 O 1.21281 * 119.99885 * 331.12487 * 6 4 3 8 8 N 1.34769 * 119.99934 * 151.12529 * 6 4 3 9 9 C 1.47161 * 120.71149 * 183.68235 * 8 6 4 10 10 C 1.53885 * 108.03330 * 132.75351 * 9 8 6 11 11 H 1.09000 * 112.57811 * 182.22661 * 10 9 8 12 12 C 1.54135 * 107.70979 * 306.32463 * 10 9 8 13 13 C 1.54283 * 104.88987 * 89.41098 * 12 10 9 14 14 C 1.54550 * 104.84741 * 359.80874 * 13 12 10 15 15 H 1.08994 * 112.18009 * 146.41018 * 14 13 12 16 16 C 1.47977 * 120.64232 * 3.37917 * 8 6 4 17 17 N 1.48307 * 107.20895 * 58.36260 * 10 9 8 18 18 C 1.36933 * 128.07975 * 106.69878 * 17 10 9 19 19 H 1.07999 * 119.99751 * 157.25834 * 18 17 10 20 20 C 1.38817 * 119.99833 * 337.26760 * 18 17 10 21 21 N 1.31616 * 120.00139 * 354.18397 * 20 18 17 22 22 Si 1.86792 * 119.99788 * 174.18254 * 20 18 17 23 23 H 1.48506 * 109.47414 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47461 * 299.99995 * 22 20 18 25 25 H 1.48503 * 109.47231 * 59.99892 * 22 20 18 26 26 C 1.53003 * 109.46710 * 150.00630 * 4 3 2 27 27 H 1.08997 * 110.80685 * 69.75673 * 26 4 3 28 28 C 1.54819 * 110.90570 * 306.13267 * 26 4 3 29 29 C 1.54097 * 104.18879 * 220.92295 * 28 26 4 30 30 O 1.43751 * 107.29454 * 357.97155 * 29 28 26 31 31 C 1.44381 * 106.97428 * 26.51111 * 30 29 28 32 32 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46754 * 299.99742 * 1 2 3 34 34 H 1.08999 * 109.47090 * 59.99312 * 1 2 3 35 35 H 1.09004 * 109.46754 * 240.00258 * 2 1 3 36 36 H 1.08996 * 109.47766 * 120.00428 * 2 1 3 37 37 H 1.09006 * 109.75016 * 13.11593 * 9 8 6 38 38 H 1.09005 * 109.79101 * 252.41143 * 9 8 6 39 39 H 1.08996 * 110.50546 * 330.47142 * 12 10 9 40 40 H 1.09001 * 110.27296 * 208.23350 * 12 10 9 41 41 H 1.09003 * 110.36147 * 240.96559 * 13 12 10 42 42 H 1.08992 * 110.45288 * 118.69500 * 13 12 10 43 43 H 1.09009 * 109.68884 * 107.67712 * 16 8 6 44 44 H 1.09000 * 109.93331 * 346.86897 * 16 8 6 45 45 H 0.96996 * 120.00444 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.48902 * 339.60198 * 28 26 4 47 47 H 1.09001 * 110.48342 * 102.24671 * 28 26 4 48 48 H 1.08991 * 109.87887 * 117.39368 * 29 28 26 49 49 H 1.08999 * 109.87777 * 238.39980 * 29 28 26 50 50 H 1.08996 * 110.62390 * 201.44044 * 31 30 29 51 51 H 1.09000 * 110.61610 * 78.43711 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5148 6 6 3.9324 1.4994 1.4200 7 8 3.2298 1.9524 2.2987 8 7 5.1615 1.0312 1.7140 9 6 5.6359 0.9876 3.1064 10 6 6.2503 -0.4008 3.3571 11 1 6.5927 -0.5277 4.3841 12 6 5.1996 -1.4569 2.9613 13 6 5.4568 -1.7307 1.4649 14 6 6.6396 -0.8088 1.0912 15 1 7.2880 -1.2561 0.3379 16 6 6.0591 0.5442 0.6432 17 7 7.3468 -0.5793 2.3746 18 6 8.6969 -0.5460 2.6005 19 1 9.3714 -1.0373 1.9149 20 6 9.1986 0.1192 3.7109 21 7 8.3899 0.8135 4.4831 22 14 11.0213 0.0287 4.1091 23 1 11.3001 0.8190 5.3352 24 1 11.4094 -1.3870 4.3334 25 1 11.8039 0.5828 2.9751 26 6 3.8404 2.7458 -0.7217 27 1 3.5673 3.6227 -0.1347 28 6 3.2129 2.8101 -2.1356 29 6 4.3414 3.3672 -3.0247 30 8 5.4665 3.6336 -2.1705 31 6 5.3574 2.7426 -1.0397 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 4.7989 1.1482 3.7860 38 1 6.3908 1.7582 3.2634 39 1 4.1924 -1.0669 3.1079 40 1 5.3415 -2.3674 3.5434 41 1 4.5760 -1.4753 0.8757 42 1 5.7264 -2.7753 1.3097 43 1 6.8676 1.2588 0.4883 44 1 5.4978 0.4158 -0.2824 45 1 8.7405 1.2786 5.2587 46 1 2.9208 1.8143 -2.4690 47 1 2.3550 3.4825 -2.1419 48 1 4.6158 2.6310 -3.7801 49 1 4.0131 4.2880 -3.5068 50 1 5.9278 3.1250 -0.1932 51 1 5.6913 1.7401 -1.3074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493924255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:18 Heat of formation + Delta-G solvation = -81.252543 kcal Electronic energy + Delta-G solvation = -32831.834916 eV Core-core repulsion = 28732.660761 eV Total energy + Delta-G solvation = -4099.174155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.69981 -39.25598 -38.28195 -37.05900 -33.99404 -33.14048 -32.40485 -31.03362 -30.86541 -29.60087 -29.27866 -27.12648 -25.43264 -24.24154 -23.57982 -22.92425 -22.52724 -20.95040 -19.99163 -19.63736 -18.59467 -17.89211 -16.76869 -16.58209 -16.38997 -15.93893 -15.35079 -15.25039 -15.06944 -14.73071 -14.54635 -14.11310 -13.80903 -13.63296 -13.42134 -13.11054 -13.05403 -12.79997 -12.65271 -12.40677 -11.96277 -11.94647 -11.87147 -11.67149 -11.55747 -11.44730 -11.34179 -11.17756 -11.06963 -10.90570 -10.89389 -10.56760 -10.42285 -10.22724 -10.06832 -9.96408 -9.86601 -9.69174 -9.59354 -8.94346 -8.71717 -8.11476 -6.82545 -5.91652 -3.31034 2.94814 3.21809 3.32820 3.38320 3.39267 3.65449 3.85981 4.35177 4.44461 4.63388 4.70311 4.81342 4.85027 4.96043 5.03056 5.07654 5.13285 5.17757 5.25933 5.28729 5.37953 5.48990 5.52601 5.58437 5.60065 5.65621 5.67458 5.70428 5.76346 5.81425 5.86174 5.90568 5.99262 6.04591 6.12767 6.24031 6.32504 6.43820 6.55878 6.62447 6.72307 6.74590 6.77718 6.90493 7.04275 7.27114 7.44821 7.64452 8.00629 8.08901 8.64771 8.99026 9.60856 10.39989 11.22190 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.004220 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.762507 B = 6633.768529 C = 7771.887564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.087 3.913 5 H 0.081 0.919 6 C 0.482 3.518 7 O -0.539 6.539 8 N -0.588 5.588 9 C 0.111 3.889 10 C 0.173 3.827 11 H 0.108 0.892 12 C -0.137 4.137 13 C -0.123 4.123 14 C 0.131 3.869 15 H 0.080 0.920 16 C 0.086 3.914 17 N -0.580 5.580 18 C -0.235 4.235 19 H 0.073 0.927 20 C 0.006 3.994 21 N -0.908 5.908 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.112 4.112 27 H 0.098 0.902 28 C -0.139 4.139 29 C 0.044 3.956 30 O -0.374 6.374 31 C 0.047 3.953 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.046 0.954 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.257 0.743 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.058 0.942 49 H 0.083 0.917 50 H 0.102 0.898 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 -1.628 -13.013 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.026 3.974 5 H 0.099 0.901 6 C 0.268 3.732 7 O -0.417 6.417 8 N -0.322 5.322 9 C -0.011 4.011 10 C 0.065 3.935 11 H 0.125 0.875 12 C -0.176 4.176 13 C -0.162 4.162 14 C 0.023 3.977 15 H 0.098 0.902 16 C -0.039 4.039 17 N -0.301 5.301 18 C -0.363 4.363 19 H 0.091 0.909 20 C -0.193 4.193 21 N -0.552 5.552 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.211 1.211 25 H -0.210 1.210 26 C -0.131 4.131 27 H 0.116 0.884 28 C -0.177 4.177 29 C -0.033 4.033 30 O -0.292 6.292 31 C -0.029 4.029 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.095 0.905 47 H 0.100 0.900 48 H 0.077 0.923 49 H 0.101 0.899 50 H 0.120 0.880 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.385 -0.974 -12.385 16.851 hybrid contribution 0.899 -0.398 0.304 1.029 sum -10.486 -1.372 -12.081 16.056 Atomic orbital electron populations 1.21700 0.93467 1.02144 1.03159 1.22581 0.95884 0.83727 1.00116 1.87980 1.18315 1.26378 1.94566 1.21971 0.83182 0.98695 0.93598 0.90089 1.21009 0.82046 0.79153 0.90976 1.90660 1.56325 1.45891 1.48844 1.48502 1.13786 1.60384 1.09520 1.22475 0.98158 1.01482 0.79005 1.21622 0.85701 0.89477 0.96659 0.87468 1.22574 0.99218 1.00111 0.95701 1.22484 0.97552 0.99278 0.96866 1.21991 0.92540 0.91821 0.91390 0.90214 1.23048 0.93167 0.99196 0.88510 1.45063 1.01137 1.83267 1.00659 1.18882 0.80234 1.27773 1.09445 0.90892 1.24982 0.97833 0.97303 0.99183 1.69833 1.33819 1.34251 1.17327 0.86232 0.84561 0.77502 0.77571 1.21560 1.21087 1.20952 1.22729 0.96123 0.97689 0.96601 0.88385 1.22856 0.98883 1.02541 0.93395 1.23201 0.86012 1.00721 0.93387 1.88913 1.45600 1.60202 1.34526 1.24030 0.94343 0.94964 0.89607 0.91140 0.91614 0.91971 0.93389 0.93180 0.91581 0.89491 0.92984 0.92777 0.93489 0.92501 0.90835 0.91715 0.93296 0.90472 0.89966 0.92346 0.89891 0.88036 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.63 6.46 37.16 0.24 0.87 16 3 O -0.35 -5.10 9.20 -53.24 -0.49 -5.59 16 4 C 0.09 1.23 1.62 -27.88 -0.05 1.18 16 5 H 0.08 0.99 5.65 -51.93 -0.29 0.70 16 6 C 0.48 8.76 6.68 -10.99 -0.07 8.68 16 7 O -0.54 -11.89 16.21 -12.45 -0.20 -12.09 16 8 N -0.59 -10.81 2.28 -170.86 -0.39 -11.20 16 9 C 0.11 2.41 5.73 -3.22 -0.02 2.39 16 10 C 0.17 3.79 3.06 -65.88 -0.20 3.59 16 11 H 0.11 2.68 6.81 -51.93 -0.35 2.33 16 12 C -0.14 -2.54 6.16 -25.47 -0.16 -2.69 16 13 C -0.12 -2.00 6.19 -25.25 -0.16 -2.16 16 14 C 0.13 2.37 4.32 -65.66 -0.28 2.08 16 15 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 16 C 0.09 1.40 3.78 -2.77 -0.01 1.39 16 17 N -0.58 -13.12 2.79 -152.84 -0.43 -13.55 16 18 C -0.24 -5.93 10.34 -15.06 -0.16 -6.09 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C 0.01 0.14 5.43 -17.43 -0.09 0.05 16 21 N -0.91 -24.37 10.21 55.49 0.57 -23.81 16 22 Si 0.91 20.75 29.56 -169.99 -5.02 15.72 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.11 -1.46 2.85 -88.61 -0.25 -1.72 16 27 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 28 C -0.14 -1.42 6.16 -25.20 -0.16 -1.58 16 29 C 0.04 0.44 7.70 37.73 0.29 0.73 16 30 O -0.37 -5.08 11.52 -35.23 -0.41 -5.49 16 31 C 0.05 0.62 5.27 38.21 0.20 0.82 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.47 7.14 -51.93 -0.37 1.10 16 38 H 0.09 2.16 7.34 -51.93 -0.38 1.77 16 39 H 0.05 0.96 7.83 -51.93 -0.41 0.55 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.68 7.84 -51.93 -0.41 0.28 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.29 7.30 -51.92 -0.38 0.92 16 44 H 0.06 0.84 3.76 -51.93 -0.20 0.65 16 45 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 46 H 0.08 0.71 7.84 -51.93 -0.41 0.30 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.10 1.49 7.62 -51.93 -0.40 1.10 16 51 H 0.07 0.87 5.44 -51.93 -0.28 0.58 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -29.86 383.47 -9.57 -39.43 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.49 Total: 4.29 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.49 Total: 6.50 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.25 Total: -48.55 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -1.10 Total: -23.17 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.86 -9.57 -39.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493924255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.825 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds