Wall clock time and date at job start Tue Mar 31 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42903 * 109.47279 * 2 1 4 4 C 1.42906 * 113.99681 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47425 * 30.00435 * 4 3 2 6 6 C 1.50704 * 109.47251 * 270.00094 * 4 3 2 7 7 O 1.21281 * 119.99885 * 331.12487 * 6 4 3 8 8 N 1.34769 * 119.99934 * 151.12529 * 6 4 3 9 9 C 1.47161 * 120.71149 * 183.68235 * 8 6 4 10 10 C 1.53885 * 108.03330 * 132.75351 * 9 8 6 11 11 H 1.09000 * 112.57811 * 182.22661 * 10 9 8 12 12 C 1.54135 * 107.70979 * 306.32463 * 10 9 8 13 13 C 1.54283 * 104.88987 * 89.41098 * 12 10 9 14 14 C 1.54550 * 104.84741 * 359.80874 * 13 12 10 15 15 H 1.08994 * 112.18009 * 146.41018 * 14 13 12 16 16 C 1.47977 * 120.64232 * 3.37917 * 8 6 4 17 17 N 1.48307 * 107.20895 * 58.36260 * 10 9 8 18 18 C 1.36933 * 128.07975 * 106.69878 * 17 10 9 19 19 H 1.07999 * 119.99751 * 157.25834 * 18 17 10 20 20 C 1.38817 * 119.99833 * 337.26760 * 18 17 10 21 21 N 1.31616 * 120.00139 * 354.18397 * 20 18 17 22 22 Si 1.86792 * 119.99788 * 174.18254 * 20 18 17 23 23 H 1.48506 * 109.47414 * 179.97438 * 22 20 18 24 24 H 1.48500 * 109.47461 * 299.99995 * 22 20 18 25 25 H 1.48503 * 109.47231 * 59.99892 * 22 20 18 26 26 C 1.53003 * 109.46710 * 150.00630 * 4 3 2 27 27 H 1.08997 * 110.80685 * 69.75673 * 26 4 3 28 28 C 1.54819 * 110.90570 * 306.13267 * 26 4 3 29 29 C 1.54097 * 104.18879 * 220.92295 * 28 26 4 30 30 O 1.43751 * 107.29454 * 357.97155 * 29 28 26 31 31 C 1.44381 * 106.97428 * 26.51111 * 30 29 28 32 32 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46754 * 299.99742 * 1 2 3 34 34 H 1.08999 * 109.47090 * 59.99312 * 1 2 3 35 35 H 1.09004 * 109.46754 * 240.00258 * 2 1 3 36 36 H 1.08996 * 109.47766 * 120.00428 * 2 1 3 37 37 H 1.09006 * 109.75016 * 13.11593 * 9 8 6 38 38 H 1.09005 * 109.79101 * 252.41143 * 9 8 6 39 39 H 1.08996 * 110.50546 * 330.47142 * 12 10 9 40 40 H 1.09001 * 110.27296 * 208.23350 * 12 10 9 41 41 H 1.09003 * 110.36147 * 240.96559 * 13 12 10 42 42 H 1.08992 * 110.45288 * 118.69500 * 13 12 10 43 43 H 1.09009 * 109.68884 * 107.67712 * 16 8 6 44 44 H 1.09000 * 109.93331 * 346.86897 * 16 8 6 45 45 H 0.96996 * 120.00444 * 180.02562 * 21 20 18 46 46 H 1.08996 * 110.48902 * 339.60198 * 28 26 4 47 47 H 1.09001 * 110.48342 * 102.24671 * 28 26 4 48 48 H 1.08991 * 109.87887 * 117.39368 * 29 28 26 49 49 H 1.08999 * 109.87777 * 238.39980 * 29 28 26 50 50 H 1.08996 * 110.62390 * 201.44044 * 31 30 29 51 51 H 1.09000 * 110.61610 * 78.43711 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8632 0.6016 -0.5148 6 6 3.9324 1.4994 1.4200 7 8 3.2298 1.9524 2.2987 8 7 5.1615 1.0312 1.7140 9 6 5.6359 0.9876 3.1064 10 6 6.2503 -0.4008 3.3571 11 1 6.5927 -0.5277 4.3841 12 6 5.1996 -1.4569 2.9613 13 6 5.4568 -1.7307 1.4649 14 6 6.6396 -0.8088 1.0912 15 1 7.2880 -1.2561 0.3379 16 6 6.0591 0.5442 0.6432 17 7 7.3468 -0.5793 2.3746 18 6 8.6969 -0.5460 2.6005 19 1 9.3714 -1.0373 1.9149 20 6 9.1986 0.1192 3.7109 21 7 8.3899 0.8135 4.4831 22 14 11.0213 0.0287 4.1091 23 1 11.3001 0.8190 5.3352 24 1 11.4094 -1.3870 4.3334 25 1 11.8039 0.5828 2.9751 26 6 3.8404 2.7458 -0.7217 27 1 3.5673 3.6227 -0.1347 28 6 3.2129 2.8101 -2.1356 29 6 4.3414 3.3672 -3.0247 30 8 5.4665 3.6336 -2.1705 31 6 5.3574 2.7426 -1.0397 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 4.7989 1.1482 3.7860 38 1 6.3908 1.7582 3.2634 39 1 4.1924 -1.0669 3.1079 40 1 5.3415 -2.3674 3.5434 41 1 4.5760 -1.4753 0.8757 42 1 5.7264 -2.7753 1.3097 43 1 6.8676 1.2588 0.4883 44 1 5.4978 0.4158 -0.2824 45 1 8.7405 1.2786 5.2587 46 1 2.9208 1.8143 -2.4690 47 1 2.3550 3.4825 -2.1419 48 1 4.6158 2.6310 -3.7801 49 1 4.0131 4.2880 -3.5068 50 1 5.9278 3.1250 -0.1932 51 1 5.6913 1.7401 -1.3074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493924255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:17 Heat of formation + Delta-G solvation = -98.953349 kcal Electronic energy + Delta-G solvation = -32832.602480 eV Core-core repulsion = 28732.660761 eV Total energy + Delta-G solvation = -4099.941719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03982 -40.47039 -39.54167 -38.34638 -35.55374 -34.42904 -33.99018 -32.39187 -31.85613 -31.11112 -30.47159 -28.52298 -26.86356 -25.67389 -25.24843 -23.93111 -23.42613 -21.99241 -21.41786 -21.20862 -20.14343 -19.20527 -18.19470 -17.83677 -17.52744 -17.11541 -16.72938 -16.55734 -16.37142 -16.13537 -15.72266 -15.53507 -15.17234 -14.85236 -14.71001 -14.58619 -14.46416 -14.22448 -13.61614 -13.47801 -13.32867 -13.32330 -13.20795 -12.92880 -12.81908 -12.69995 -12.64163 -12.63524 -12.30501 -12.21062 -12.12477 -12.02304 -11.83725 -11.71431 -11.50658 -11.46786 -11.25487 -11.12211 -10.69192 -10.63028 -10.23384 -9.76546 -8.63516 -7.87237 -5.26208 1.49861 1.50325 1.53030 1.56952 1.90847 2.49396 2.52994 2.91725 3.30820 3.33754 3.41645 3.64621 3.69651 3.83220 3.89010 4.05716 4.10967 4.14519 4.17632 4.18686 4.24948 4.30237 4.30857 4.36064 4.44377 4.48019 4.57913 4.69370 4.70202 4.80796 4.83377 4.85434 4.89330 4.96327 5.03673 5.04795 5.06822 5.10918 5.11991 5.16653 5.21818 5.27550 5.39478 5.52822 5.59634 5.79316 5.86053 6.02907 6.23548 6.54693 7.05282 7.17239 7.72270 8.53587 9.25399 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.004220 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.762507 B = 6633.768529 C = 7771.887564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 O -0.369 6.369 4 C 0.101 3.899 5 H 0.113 0.887 6 C 0.479 3.521 7 O -0.586 6.586 8 N -0.586 5.586 9 C 0.127 3.873 10 C 0.172 3.828 11 H 0.065 0.935 12 C -0.129 4.129 13 C -0.111 4.111 14 C 0.125 3.875 15 H 0.101 0.899 16 C 0.091 3.909 17 N -0.600 5.600 18 C -0.236 4.236 19 H 0.081 0.919 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.302 1.302 24 H -0.280 1.280 25 H -0.277 1.277 26 C -0.114 4.114 27 H 0.070 0.930 28 C -0.128 4.128 29 C 0.039 3.961 30 O -0.397 6.397 31 C 0.051 3.949 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.246 0.754 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.268 -3.617 -17.037 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.287 6.287 4 C 0.039 3.961 5 H 0.130 0.870 6 C 0.267 3.733 7 O -0.466 6.466 8 N -0.319 5.319 9 C 0.003 3.997 10 C 0.064 3.936 11 H 0.083 0.917 12 C -0.168 4.168 13 C -0.150 4.150 14 C 0.018 3.982 15 H 0.119 0.881 16 C -0.033 4.033 17 N -0.322 5.322 18 C -0.365 4.365 19 H 0.099 0.901 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.229 1.229 24 H -0.206 1.206 25 H -0.203 1.203 26 C -0.133 4.133 27 H 0.088 0.912 28 C -0.166 4.166 29 C -0.037 4.037 30 O -0.317 6.317 31 C -0.026 4.026 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.055 0.945 46 H 0.118 0.882 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.113 0.887 50 H 0.092 0.908 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.394 -2.989 -16.471 20.829 hybrid contribution 1.151 0.244 1.550 1.946 sum -11.243 -2.745 -14.921 18.883 Atomic orbital electron populations 1.21724 0.92251 1.03529 1.02702 1.22869 0.97025 0.82516 1.00855 1.87997 1.18023 1.28378 1.94328 1.21918 0.83570 1.00281 0.90301 0.86954 1.21934 0.81162 0.77531 0.92638 1.90636 1.57527 1.47674 1.50808 1.48486 1.14434 1.60507 1.08503 1.21960 0.96243 1.00343 0.81176 1.21421 0.86731 0.90553 0.94861 0.91651 1.22442 0.97674 0.98763 0.97889 1.22438 0.97782 0.99911 0.94860 1.22304 0.93119 0.92900 0.89881 0.88095 1.23112 0.93084 0.97814 0.89277 1.45232 1.00647 1.83365 1.02940 1.19220 0.81779 1.26511 1.08954 0.90142 1.25658 1.01026 0.97939 0.99764 1.70033 1.34920 1.35610 1.17582 0.85319 0.80889 0.77247 0.76756 1.22893 1.20574 1.20335 1.22677 0.96517 0.96077 0.98036 0.91154 1.22840 0.98798 1.04015 0.90942 1.23444 0.84893 1.02199 0.93184 1.88894 1.47164 1.60673 1.34941 1.23934 0.93963 0.95606 0.89059 0.88848 0.93633 0.90871 0.90012 0.94851 0.93353 0.93612 0.93126 0.92529 0.90663 0.90669 0.92254 0.87164 0.94473 0.88238 0.89553 0.90027 0.88683 0.90752 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 10.28 71.98 0.74 -1.65 16 2 C 0.04 0.86 6.46 71.98 0.46 1.33 16 3 O -0.37 -9.65 9.20 -131.76 -1.21 -10.87 16 4 C 0.10 2.58 1.62 29.85 0.05 2.63 16 5 H 0.11 2.15 5.65 -2.39 -0.01 2.14 16 6 C 0.48 17.25 6.68 87.66 0.59 17.83 16 7 O -0.59 -26.62 16.21 14.19 0.23 -26.39 16 8 N -0.59 -21.53 2.28 -812.87 -1.85 -23.38 16 9 C 0.13 5.81 5.73 86.55 0.50 6.31 16 10 C 0.17 7.80 3.06 45.33 0.14 7.94 16 11 H 0.07 3.49 6.81 -2.39 -0.02 3.48 16 12 C -0.13 -4.66 6.16 31.41 0.19 -4.47 16 13 C -0.11 -3.23 6.19 31.56 0.20 -3.03 16 14 C 0.13 4.17 4.32 45.47 0.20 4.37 16 15 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 16 C 0.09 2.76 3.78 86.40 0.33 3.09 16 17 N -0.60 -27.11 2.79 -637.46 -1.78 -28.88 16 18 C -0.24 -11.93 10.34 84.04 0.87 -11.06 16 19 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 20 C -0.05 -2.58 5.43 84.86 0.46 -2.12 16 21 N -0.94 -53.02 10.21 21.65 0.22 -52.80 16 22 Si 0.97 43.63 29.56 68.60 2.03 45.66 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 C -0.11 -2.75 2.85 -9.49 -0.03 -2.78 16 27 H 0.07 2.09 8.13 -2.39 -0.02 2.07 16 28 C -0.13 -2.15 6.16 31.59 0.19 -1.95 16 29 C 0.04 0.65 7.70 72.35 0.56 1.20 16 30 O -0.40 -10.00 11.52 -148.98 -1.72 -11.71 16 31 C 0.05 1.25 5.27 72.67 0.38 1.63 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.10 8.08 -2.39 -0.02 1.08 16 36 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 2.32 7.14 -2.38 -0.02 2.31 16 38 H 0.05 2.45 7.34 -2.38 -0.02 2.43 16 39 H 0.05 1.84 7.83 -2.39 -0.02 1.82 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 1.80 7.84 -2.39 -0.02 1.78 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 2.02 7.30 -2.38 -0.02 2.01 16 44 H 0.11 2.35 3.76 -2.39 -0.01 2.34 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 46 H 0.10 1.26 7.84 -2.39 -0.02 1.24 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.07 2.21 7.62 -2.39 -0.02 2.19 16 51 H 0.09 1.84 5.44 -2.39 -0.01 1.83 16 Total: -1.00 -69.97 383.47 2.66 -67.31 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.92 Total: 21.82 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 5.82 Total: 19.26 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.40 Total: -105.06 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -2.70 Total: -48.97 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -69.97 2.66 -67.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493924255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.646 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds