Wall clock time and date at job start Tue Mar 31 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00247 * 2 1 4 4 C 1.50701 * 119.99897 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47062 * 354.99334 * 4 2 1 6 6 C 1.52998 * 109.47313 * 114.99640 * 4 2 1 7 7 C 1.50701 * 109.47091 * 184.99963 * 6 4 2 8 8 O 1.21283 * 120.00258 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00058 * 180.02562 * 7 6 4 10 10 C 1.46500 * 120.00029 * 180.02562 * 9 7 6 11 11 H 1.09002 * 111.00614 * 37.71281 * 10 9 7 12 12 C 1.55012 * 111.10611 * 273.54272 * 10 9 7 13 13 O 1.43909 * 105.18438 * 206.02946 * 12 10 9 14 14 C 1.42393 * 109.55683 * 24.29326 * 13 12 10 15 15 C 1.52694 * 116.14692 * 129.85037 * 14 13 12 16 16 N 1.47210 * 87.79722 * 90.70583 * 15 14 13 17 17 C 1.36939 * 135.97108 * 206.43771 * 16 15 14 18 18 H 1.07995 * 120.00363 * 7.80729 * 17 16 15 19 19 C 1.38811 * 119.99913 * 187.80230 * 17 16 15 20 20 N 1.31614 * 120.00029 * 195.32788 * 19 17 16 21 21 Si 1.86806 * 119.99886 * 15.32225 * 19 17 16 22 22 H 1.48496 * 109.47243 * 270.00212 * 21 19 17 23 23 H 1.48505 * 109.46781 * 30.00256 * 21 19 17 24 24 H 1.48499 * 109.46957 * 149.99902 * 21 19 17 25 25 C 1.47207 * 88.05444 * 26.69194 * 16 15 14 26 26 C 1.53663 * 108.53338 * 358.08964 * 14 13 12 27 27 O 1.42905 * 109.47287 * 234.99579 * 4 2 1 28 28 C 1.42904 * 113.99820 * 89.99575 * 27 4 2 29 29 C 1.53006 * 109.46708 * 180.02562 * 28 27 4 30 30 H 1.08000 * 120.00210 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99708 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47118 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47029 * 299.99738 * 3 2 1 34 34 H 1.08998 * 109.47194 * 60.00250 * 3 2 1 35 35 H 1.09004 * 109.47364 * 65.00229 * 6 4 2 36 36 H 1.08996 * 109.47393 * 304.99978 * 6 4 2 37 37 H 0.97005 * 120.00098 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.30549 * 87.10004 * 12 10 9 39 39 H 1.09004 * 110.38551 * 324.99692 * 12 10 9 40 40 H 1.09004 * 113.49955 * 335.97100 * 15 14 13 41 41 H 1.09005 * 113.55743 * 205.44831 * 15 14 13 42 42 H 0.97001 * 120.00037 * 354.90512 * 20 19 17 43 43 H 1.08996 * 113.49679 * 88.03850 * 25 16 15 44 44 H 1.08996 * 113.49976 * 218.58408 * 25 16 15 45 45 H 1.08998 * 110.93255 * 97.29741 * 26 14 13 46 46 H 1.09000 * 110.93168 * 220.96351 * 26 14 13 47 47 H 1.08999 * 109.47266 * 299.99896 * 28 27 4 48 48 H 1.09000 * 109.47068 * 60.00482 * 28 27 4 49 49 H 1.09001 * 109.46576 * 180.02562 * 29 28 27 50 50 H 1.08999 * 109.46705 * 299.99667 * 29 28 27 51 51 H 1.09000 * 109.47429 * 60.00131 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1317 0.0887 6 6 2.8463 -1.4415 -1.3080 7 6 3.5007 -2.7979 -1.3625 8 8 3.3556 -3.5785 -0.4457 9 7 4.2480 -3.1432 -2.4296 10 6 4.8837 -4.4620 -2.4829 11 1 4.2339 -5.2265 -2.0569 12 6 6.2635 -4.4455 -1.7766 13 8 7.0184 -5.5006 -2.3995 14 6 6.5029 -5.7499 -3.7033 15 6 7.5263 -5.7851 -4.8360 16 7 7.6532 -7.2326 -4.6000 17 6 8.6234 -8.1799 -4.7910 18 1 9.6155 -7.8828 -5.0972 19 6 8.3318 -9.5222 -4.5908 20 7 9.3078 -10.3977 -4.4755 21 14 6.5540 -10.0860 -4.4849 22 1 6.1011 -10.0328 -3.0717 23 1 5.7018 -9.1941 -5.3118 24 1 6.4458 -11.4793 -4.9873 25 6 6.2781 -7.2168 -4.0748 26 6 5.2976 -4.8258 -3.9369 27 8 2.9709 -1.3318 1.1030 28 6 2.4139 -1.8775 2.3005 29 6 3.4681 -1.8558 3.4093 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 3.1351 1.1059 -0.0005 33 1 1.8002 1.8766 -0.8900 34 1 1.8002 1.8766 0.8900 35 1 3.6116 -0.6668 -1.3558 36 1 2.1656 -1.3323 -2.1522 37 1 4.3644 -2.5188 -3.1628 38 1 6.1455 -4.6431 -0.7112 39 1 6.7572 -3.4859 -1.9302 40 1 8.4368 -5.2274 -4.6167 41 1 7.1056 -5.5389 -5.8110 42 1 10.2277 -10.1181 -4.6039 43 1 5.5179 -7.3589 -4.8429 44 1 6.1347 -7.8679 -3.2126 45 1 5.5916 -3.9353 -4.4924 46 1 4.4945 -5.3553 -4.4494 47 1 1.5538 -1.2815 2.6057 48 1 2.0981 -2.9048 2.1190 49 1 3.0433 -2.2725 4.3225 50 1 4.3283 -2.4517 3.1043 51 1 3.7836 -0.8284 3.5907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502458479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:41 Heat of formation + Delta-G solvation = -43.851207 kcal Electronic energy + Delta-G solvation = -29991.562894 eV Core-core repulsion = 25894.010583 eV Total energy + Delta-G solvation = -4097.552311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58476 -39.77778 -38.48195 -36.57287 -35.51915 -34.59971 -32.31699 -32.12573 -31.00510 -29.91946 -28.31147 -27.78065 -25.65324 -25.38712 -24.56982 -22.95475 -21.91367 -21.17039 -20.59634 -19.30915 -19.21775 -17.52740 -17.25106 -17.17199 -16.69221 -16.07731 -15.79635 -15.35121 -15.25221 -14.91146 -14.59805 -14.14819 -14.12779 -13.90801 -13.77967 -13.65625 -13.56074 -13.33544 -13.17547 -12.86139 -12.57297 -12.53529 -12.23673 -12.12033 -12.05339 -11.86604 -11.67528 -11.58314 -11.35150 -11.12231 -10.92616 -10.77067 -10.40399 -10.19021 -10.04408 -9.82763 -9.77224 -9.59748 -9.22247 -9.20503 -8.78885 -8.65805 -7.12633 -6.24227 -3.14710 1.67130 2.45966 2.85789 3.43820 3.46423 3.51491 3.66384 4.00829 4.20615 4.39437 4.48629 4.52217 4.65821 4.73104 4.77716 4.83716 4.89241 4.91177 4.96958 5.03978 5.09263 5.14994 5.16921 5.20393 5.22153 5.27741 5.39598 5.50835 5.51300 5.54768 5.60215 5.68895 5.75950 5.76255 5.87943 5.89865 5.93313 6.10542 6.16230 6.18950 6.27806 6.30320 6.38996 6.45179 6.52104 7.00927 7.17867 7.27148 7.51664 8.03762 8.30214 9.03998 9.57608 10.42951 11.26233 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002220 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.281013 B =12611.284064 C =12942.739531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C -0.115 4.115 4 C 0.142 3.858 5 H 0.073 0.927 6 C -0.137 4.137 7 C 0.516 3.484 8 O -0.527 6.527 9 N -0.721 5.721 10 C 0.113 3.887 11 H 0.106 0.894 12 C 0.041 3.959 13 O -0.333 6.333 14 C 0.072 3.928 15 C 0.113 3.887 16 N -0.616 5.616 17 C -0.301 4.301 18 H 0.081 0.919 19 C -0.025 4.025 20 N -0.933 5.933 21 Si 1.062 2.938 22 H -0.292 1.292 23 H -0.283 1.283 24 H -0.295 1.295 25 C 0.097 3.903 26 C -0.143 4.143 27 O -0.367 6.367 28 C 0.064 3.936 29 C -0.150 4.150 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.401 0.599 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.041 0.959 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.778 26.299 8.032 33.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.147 4.147 3 C -0.171 4.171 4 C 0.084 3.916 5 H 0.091 0.909 6 C -0.176 4.176 7 C 0.302 3.698 8 O -0.402 6.402 9 N -0.374 5.374 10 C 0.008 3.992 11 H 0.124 0.876 12 C -0.038 4.038 13 O -0.250 6.250 14 C 0.030 3.970 15 C -0.013 4.013 16 N -0.344 5.344 17 C -0.427 4.427 18 H 0.099 0.901 19 C -0.224 4.224 20 N -0.575 5.575 21 Si 0.894 3.106 22 H -0.220 1.220 23 H -0.209 1.209 24 H -0.223 1.223 25 C -0.029 4.029 26 C -0.182 4.182 27 O -0.286 6.286 28 C -0.013 4.013 29 C -0.207 4.207 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.236 0.764 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.109 0.891 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.239 24.146 9.015 32.771 hybrid contribution 0.613 1.706 -0.847 2.001 sum -19.626 25.851 8.169 33.469 Atomic orbital electron populations 1.23775 0.95143 1.02204 1.01091 1.22305 0.95483 0.96671 1.00262 1.20744 1.00743 0.93935 1.01711 1.20719 0.90861 0.93723 0.86329 0.90901 1.21795 1.01474 0.95861 0.98517 1.20532 0.78507 0.88923 0.81812 1.90728 1.60806 1.52504 1.36161 1.45892 1.52004 1.17371 1.22139 1.22716 0.94705 0.85341 0.96455 0.87639 1.23799 0.90007 0.91675 0.98277 1.88493 1.55240 1.53961 1.27323 1.23126 0.92658 0.96008 0.85220 1.22659 0.96444 0.88122 0.94117 1.46010 1.10835 1.04489 1.73044 1.20089 0.89678 0.86617 1.46298 0.90098 1.25763 1.06359 0.91145 0.99105 1.70891 1.00062 1.36447 1.50085 0.83775 0.75149 0.75237 0.76454 1.21979 1.20943 1.22274 1.23048 0.89492 0.93357 0.97034 1.23156 0.98848 1.00675 0.95565 1.87905 1.38141 1.83282 1.19239 1.22422 0.96161 0.97537 0.85146 1.21718 0.99577 1.02590 0.96790 0.88356 0.88025 0.91368 0.91678 0.91692 0.87774 0.87571 0.76413 0.89414 0.92231 0.93046 0.93627 0.92899 0.92626 0.92255 0.89759 0.89059 0.94037 0.92893 0.91308 0.91644 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 13.95 29.02 0.40 -0.70 16 2 C -0.15 -1.00 5.05 -101.06 -0.51 -1.51 16 3 C -0.11 -0.67 9.69 36.01 0.35 -0.32 16 4 C 0.14 1.21 1.78 -27.88 -0.05 1.16 16 5 H 0.07 0.68 7.25 -51.93 -0.38 0.30 16 6 C -0.14 -0.98 5.24 -27.88 -0.15 -1.12 16 7 C 0.52 5.41 7.71 -10.98 -0.08 5.33 16 8 O -0.53 -7.67 15.17 -8.87 -0.13 -7.81 16 9 N -0.72 -6.60 5.24 -51.50 -0.27 -6.87 16 10 C 0.11 1.40 3.37 -65.54 -0.22 1.17 16 11 H 0.11 1.48 7.74 -51.93 -0.40 1.07 16 12 C 0.04 0.60 7.49 38.22 0.29 0.88 16 13 O -0.33 -6.51 11.18 -35.23 -0.39 -6.90 16 14 C 0.07 1.29 1.75 -90.45 -0.16 1.13 16 15 C 0.11 2.29 8.20 -8.08 -0.07 2.22 16 16 N -0.62 -15.88 3.63 -184.63 -0.67 -16.55 16 17 C -0.30 -9.03 11.03 -15.06 -0.17 -9.20 16 18 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 19 C -0.02 -0.77 5.50 -17.43 -0.10 -0.86 16 20 N -0.93 -30.37 13.70 55.49 0.76 -29.61 16 21 Si 1.06 27.47 25.51 -169.99 -4.34 23.13 16 22 H -0.29 -7.37 6.97 56.52 0.39 -6.98 16 23 H -0.28 -6.64 5.65 56.52 0.32 -6.32 16 24 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 25 C 0.10 2.11 5.09 -7.93 -0.04 2.07 16 26 C -0.14 -1.77 6.03 -25.06 -0.15 -1.92 16 27 O -0.37 -3.90 9.01 -49.66 -0.45 -4.35 16 28 C 0.06 0.61 6.46 37.16 0.24 0.85 16 29 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 30 H 0.10 0.55 7.84 -52.49 -0.41 0.14 16 31 H 0.10 0.49 8.05 -52.48 -0.42 0.07 16 32 H 0.07 0.44 7.50 -51.93 -0.39 0.05 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 2.40 8.51 -40.82 -0.35 2.05 16 38 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 42 H 0.26 8.39 8.73 -40.82 -0.36 8.03 16 43 H 0.06 1.13 6.79 -51.93 -0.35 0.78 16 44 H 0.06 1.39 6.28 -51.93 -0.33 1.07 16 45 H 0.08 0.83 7.96 -51.93 -0.41 0.41 16 46 H 0.09 1.03 7.81 -51.93 -0.41 0.62 16 47 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 409.60 15.07 6.17 6.17 Total: -1.00 -37.17 409.60 -8.33 -45.50 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.98 Total: -1.01 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.03 Total: -1.70 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.18 Total: -53.03 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.98 Total: -19.05 kcal Atomic # 14 Polarization: 27.47 SS G_CDS: -4.34 Total: 23.13 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.17 -8.33 -45.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502458479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.644 kcal (2) G-P(sol) polarization free energy of solvation -37.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds