Wall clock time and date at job start Tue Mar 31 2020 22:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50700 * 120.00247 * 2 1 4 4 C 1.50701 * 119.99897 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47062 * 354.99334 * 4 2 1 6 6 C 1.52998 * 109.47313 * 114.99640 * 4 2 1 7 7 C 1.50701 * 109.47091 * 184.99963 * 6 4 2 8 8 O 1.21283 * 120.00258 * 359.97438 * 7 6 4 9 9 N 1.34777 * 120.00058 * 180.02562 * 7 6 4 10 10 C 1.46500 * 120.00029 * 180.02562 * 9 7 6 11 11 H 1.09002 * 111.00614 * 37.71281 * 10 9 7 12 12 C 1.55012 * 111.10611 * 273.54272 * 10 9 7 13 13 O 1.43909 * 105.18438 * 206.02946 * 12 10 9 14 14 C 1.42393 * 109.55683 * 24.29326 * 13 12 10 15 15 C 1.52694 * 116.14692 * 129.85037 * 14 13 12 16 16 N 1.47210 * 87.79722 * 90.70583 * 15 14 13 17 17 C 1.36939 * 135.97108 * 206.43771 * 16 15 14 18 18 H 1.07995 * 120.00363 * 7.80729 * 17 16 15 19 19 C 1.38811 * 119.99913 * 187.80230 * 17 16 15 20 20 N 1.31614 * 120.00029 * 195.32788 * 19 17 16 21 21 Si 1.86806 * 119.99886 * 15.32225 * 19 17 16 22 22 H 1.48496 * 109.47243 * 270.00212 * 21 19 17 23 23 H 1.48505 * 109.46781 * 30.00256 * 21 19 17 24 24 H 1.48499 * 109.46957 * 149.99902 * 21 19 17 25 25 C 1.47207 * 88.05444 * 26.69194 * 16 15 14 26 26 C 1.53663 * 108.53338 * 358.08964 * 14 13 12 27 27 O 1.42905 * 109.47287 * 234.99579 * 4 2 1 28 28 C 1.42904 * 113.99820 * 89.99575 * 27 4 2 29 29 C 1.53006 * 109.46708 * 180.02562 * 28 27 4 30 30 H 1.08000 * 120.00210 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.99708 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.47118 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47029 * 299.99738 * 3 2 1 34 34 H 1.08998 * 109.47194 * 60.00250 * 3 2 1 35 35 H 1.09004 * 109.47364 * 65.00229 * 6 4 2 36 36 H 1.08996 * 109.47393 * 304.99978 * 6 4 2 37 37 H 0.97005 * 120.00098 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.30549 * 87.10004 * 12 10 9 39 39 H 1.09004 * 110.38551 * 324.99692 * 12 10 9 40 40 H 1.09004 * 113.49955 * 335.97100 * 15 14 13 41 41 H 1.09005 * 113.55743 * 205.44831 * 15 14 13 42 42 H 0.97001 * 120.00037 * 354.90512 * 20 19 17 43 43 H 1.08996 * 113.49679 * 88.03850 * 25 16 15 44 44 H 1.08996 * 113.49976 * 218.58408 * 25 16 15 45 45 H 1.08998 * 110.93255 * 97.29741 * 26 14 13 46 46 H 1.09000 * 110.93168 * 220.96351 * 26 14 13 47 47 H 1.08999 * 109.47266 * 299.99896 * 28 27 4 48 48 H 1.09000 * 109.47068 * 60.00482 * 28 27 4 49 49 H 1.09001 * 109.46576 * 180.02562 * 29 28 27 50 50 H 1.08999 * 109.46705 * 299.99667 * 29 28 27 51 51 H 1.09000 * 109.47429 * 60.00131 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 1 1.3585 -2.1317 0.0887 6 6 2.8463 -1.4415 -1.3080 7 6 3.5007 -2.7979 -1.3625 8 8 3.3556 -3.5785 -0.4457 9 7 4.2480 -3.1432 -2.4296 10 6 4.8837 -4.4620 -2.4829 11 1 4.2339 -5.2265 -2.0569 12 6 6.2635 -4.4455 -1.7766 13 8 7.0184 -5.5006 -2.3995 14 6 6.5029 -5.7499 -3.7033 15 6 7.5263 -5.7851 -4.8360 16 7 7.6532 -7.2326 -4.6000 17 6 8.6234 -8.1799 -4.7910 18 1 9.6155 -7.8828 -5.0972 19 6 8.3318 -9.5222 -4.5908 20 7 9.3078 -10.3977 -4.4755 21 14 6.5540 -10.0860 -4.4849 22 1 6.1011 -10.0328 -3.0717 23 1 5.7018 -9.1941 -5.3118 24 1 6.4458 -11.4793 -4.9873 25 6 6.2781 -7.2168 -4.0748 26 6 5.2976 -4.8258 -3.9369 27 8 2.9709 -1.3318 1.1030 28 6 2.4139 -1.8775 2.3005 29 6 3.4681 -1.8558 3.4093 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9354 0.0004 32 1 3.1351 1.1059 -0.0005 33 1 1.8002 1.8766 -0.8900 34 1 1.8002 1.8766 0.8900 35 1 3.6116 -0.6668 -1.3558 36 1 2.1656 -1.3323 -2.1522 37 1 4.3644 -2.5188 -3.1628 38 1 6.1455 -4.6431 -0.7112 39 1 6.7572 -3.4859 -1.9302 40 1 8.4368 -5.2274 -4.6167 41 1 7.1056 -5.5389 -5.8110 42 1 10.2277 -10.1181 -4.6039 43 1 5.5179 -7.3589 -4.8429 44 1 6.1347 -7.8679 -3.2126 45 1 5.5916 -3.9353 -4.4924 46 1 4.4945 -5.3553 -4.4494 47 1 1.5538 -1.2815 2.6057 48 1 2.0981 -2.9048 2.1190 49 1 3.0433 -2.2725 4.3225 50 1 4.3283 -2.4517 3.1043 51 1 3.7836 -0.8284 3.5907 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502458479.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:40 Heat of formation + Delta-G solvation = -71.660425 kcal Electronic energy + Delta-G solvation = -29992.768793 eV Core-core repulsion = 25894.010583 eV Total energy + Delta-G solvation = -4098.758209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77264 -40.77711 -39.27548 -38.06988 -36.07974 -35.65086 -34.53171 -32.82154 -31.96114 -30.91364 -29.79514 -28.20485 -27.25299 -27.05240 -25.27674 -23.66610 -23.39658 -22.46037 -21.56340 -20.78504 -19.77396 -19.58453 -18.13070 -17.85475 -17.69132 -17.45852 -16.61825 -16.55861 -16.22305 -16.04452 -15.69013 -15.63280 -15.28770 -15.10808 -15.02956 -14.81596 -14.65755 -14.28004 -14.01211 -13.92673 -13.59015 -13.48955 -13.24018 -13.12284 -12.81893 -12.68059 -12.62960 -12.59473 -12.47060 -12.46446 -12.02371 -11.96146 -11.77170 -11.75267 -11.59287 -11.33403 -10.93071 -10.84482 -10.45643 -10.36826 -10.09113 -10.04931 -9.25415 -8.64068 -5.45935 1.20611 1.37046 1.48808 1.64165 1.67496 2.04832 2.54422 2.71650 2.81844 3.04045 3.15035 3.36049 3.48134 3.64819 3.69824 3.92781 3.94912 4.04030 4.06960 4.17056 4.24318 4.35260 4.47096 4.49827 4.56141 4.57379 4.58564 4.63169 4.66350 4.74492 4.74889 4.78219 4.84457 4.87146 4.89865 4.92535 4.95432 5.01926 5.02676 5.09023 5.20257 5.22590 5.23842 5.44184 5.66252 5.83446 5.93900 6.18086 6.35016 6.58300 6.68673 7.30417 7.33437 8.27435 8.88137 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021332 B = 0.002220 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.281013 B =12611.284064 C =12942.739531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.155 4.155 3 C -0.112 4.112 4 C 0.136 3.864 5 H 0.058 0.942 6 C -0.128 4.128 7 C 0.513 3.487 8 O -0.573 6.573 9 N -0.704 5.704 10 C 0.125 3.875 11 H 0.087 0.913 12 C 0.037 3.963 13 O -0.374 6.374 14 C 0.085 3.915 15 C 0.112 3.888 16 N -0.656 5.656 17 C -0.289 4.289 18 H 0.046 0.954 19 C -0.090 4.090 20 N -0.970 5.970 21 Si 1.103 2.897 22 H -0.289 1.289 23 H -0.241 1.241 24 H -0.299 1.299 25 C 0.085 3.915 26 C -0.124 4.124 27 O -0.385 6.385 28 C 0.063 3.937 29 C -0.147 4.147 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.422 0.578 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.245 0.755 43 H 0.087 0.913 44 H 0.036 0.964 45 H 0.123 0.877 46 H 0.114 0.886 47 H 0.054 0.946 48 H 0.036 0.964 49 H 0.084 0.916 50 H 0.045 0.955 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.216 29.801 6.855 38.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.168 4.168 4 C 0.078 3.922 5 H 0.076 0.924 6 C -0.168 4.168 7 C 0.301 3.699 8 O -0.452 6.452 9 N -0.358 5.358 10 C 0.019 3.981 11 H 0.105 0.895 12 C -0.040 4.040 13 O -0.293 6.293 14 C 0.044 3.956 15 C -0.013 4.013 16 N -0.385 5.385 17 C -0.416 4.416 18 H 0.064 0.936 19 C -0.281 4.281 20 N -0.616 5.616 21 Si 0.927 3.073 22 H -0.216 1.216 23 H -0.165 1.165 24 H -0.227 1.227 25 C -0.039 4.039 26 C -0.163 4.163 27 O -0.305 6.305 28 C -0.013 4.013 29 C -0.204 4.204 30 H 0.116 0.884 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.260 0.740 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.054 0.946 45 H 0.141 0.859 46 H 0.132 0.868 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.103 0.897 50 H 0.065 0.935 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.698 27.754 7.801 37.319 hybrid contribution 1.751 0.742 -0.409 1.945 sum -21.948 28.496 7.392 36.720 Atomic orbital electron populations 1.23921 0.94944 1.02892 0.99789 1.22230 0.95667 0.96166 1.01465 1.20734 1.00103 0.93528 1.02458 1.20852 0.90740 0.94228 0.86361 0.92411 1.21855 1.02189 0.93831 0.98892 1.21169 0.77991 0.89659 0.81110 1.90725 1.62404 1.54111 1.37942 1.45681 1.51038 1.16476 1.22608 1.22361 0.93049 0.86570 0.96129 0.89460 1.23948 0.91450 0.91130 0.97510 1.88455 1.56786 1.55610 1.28409 1.22877 0.93939 0.94766 0.84049 1.22955 0.97110 0.84472 0.96751 1.46097 1.12005 1.06205 1.74155 1.19934 0.89780 0.87958 1.43962 0.93649 1.27169 1.09596 0.91775 0.99578 1.71009 0.99707 1.37382 1.53451 0.83333 0.71297 0.75324 0.77309 1.21588 1.16485 1.22716 1.23385 0.87890 0.95816 0.96854 1.23108 0.96511 1.00940 0.95705 1.87873 1.39344 1.83333 1.19956 1.22435 0.96799 0.96789 0.85298 1.21718 0.98756 1.02698 0.97211 0.88369 0.86654 0.92093 0.90121 0.91761 0.86073 0.84362 0.73968 0.90955 0.90343 0.94104 0.89719 0.94606 0.89609 0.94551 0.85918 0.86760 0.92755 0.94600 0.89709 0.93544 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 13.95 67.79 0.95 -0.73 16 2 C -0.15 -1.74 5.05 -16.48 -0.08 -1.82 16 3 C -0.11 -1.01 9.69 71.24 0.69 -0.32 16 4 C 0.14 2.10 1.78 29.85 0.05 2.15 16 5 H 0.06 1.04 7.25 -2.39 -0.02 1.02 16 6 C -0.13 -1.43 5.24 29.85 0.16 -1.27 16 7 C 0.51 9.50 7.71 87.66 0.68 10.18 16 8 O -0.57 -16.36 15.17 10.76 0.16 -16.19 16 9 N -0.70 -10.17 5.24 -435.23 -2.28 -12.45 16 10 C 0.13 2.71 3.37 46.54 0.16 2.87 16 11 H 0.09 2.28 7.74 -2.39 -0.02 2.26 16 12 C 0.04 1.04 7.49 72.67 0.54 1.58 16 13 O -0.37 -14.33 11.18 -148.98 -1.67 -15.99 16 14 C 0.09 2.84 1.75 -10.68 -0.02 2.83 16 15 C 0.11 4.26 8.20 83.38 0.68 4.95 16 16 N -0.66 -33.38 3.63 -739.11 -2.68 -36.06 16 17 C -0.29 -17.82 11.03 84.03 0.93 -16.90 16 18 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 19 C -0.09 -5.67 5.50 84.86 0.47 -5.20 16 20 N -0.97 -65.87 13.70 21.65 0.30 -65.57 16 21 Si 1.10 55.61 25.51 68.60 1.75 57.36 16 22 H -0.29 -14.23 6.97 99.48 0.69 -13.54 16 23 H -0.24 -10.33 5.65 99.48 0.56 -9.77 16 24 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 25 C 0.09 3.53 5.09 83.47 0.42 3.96 16 26 C -0.12 -2.43 6.03 31.68 0.19 -2.24 16 27 O -0.39 -7.90 9.01 -135.18 -1.22 -9.12 16 28 C 0.06 1.19 6.46 71.98 0.46 1.66 16 29 C -0.15 -2.47 10.28 71.98 0.74 -1.73 16 30 H 0.10 0.91 7.84 -2.91 -0.02 0.89 16 31 H 0.12 0.76 8.05 -2.91 -0.02 0.74 16 32 H 0.06 0.64 7.50 -2.39 -0.02 0.62 16 33 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 35 H 0.12 0.99 7.66 -2.38 -0.02 0.97 16 36 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.42 2.75 8.51 -92.70 -0.79 1.96 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 2.63 8.13 -2.38 -0.02 2.61 16 42 H 0.24 16.70 8.73 -92.71 -0.81 15.89 16 43 H 0.09 3.06 6.79 -2.39 -0.02 3.04 16 44 H 0.04 1.67 6.28 -2.39 -0.02 1.66 16 45 H 0.12 1.55 7.96 -2.39 -0.02 1.53 16 46 H 0.11 1.85 7.81 -2.39 -0.02 1.83 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.04 0.78 8.09 -2.39 -0.02 0.76 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -87.20 409.60 1.30 -85.90 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -0.08 Total: 12.18 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 7.02 Total: -0.04 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -4.67 Total: -114.09 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -2.72 Total: -41.31 kcal Atomic # 14 Polarization: 55.61 SS G_CDS: 1.75 Total: 57.36 kcal Total: -87.20 1.30 -85.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502458479.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.239 kcal (2) G-P(sol) polarization free energy of solvation -87.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds