Wall clock time and date at job start Tue Mar 31 2020 22:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00236 * 2 1 4 4 C 1.50700 * 120.00003 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47157 * 4.99696 * 4 2 1 6 6 C 1.53007 * 109.46958 * 244.99624 * 4 2 1 7 7 C 1.50696 * 109.46923 * 174.99870 * 6 4 2 8 8 O 1.21278 * 120.00389 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99632 * 180.02562 * 7 6 4 10 10 C 1.47123 * 121.05298 * 359.97437 * 9 7 6 11 11 C 1.53236 * 108.72916 * 127.80991 * 10 9 7 12 12 O 1.43108 * 109.33925 * 54.12580 * 11 10 9 13 13 C 1.42486 * 113.97029 * 300.02851 * 12 11 10 14 14 C 1.53437 * 113.81706 * 189.53909 * 13 12 11 15 15 N 1.47678 * 85.97945 * 91.24231 * 14 13 12 16 16 C 1.36932 * 134.45726 * 204.28999 * 15 14 13 17 17 H 1.08000 * 120.00308 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00229 * 0.02562 * 16 15 14 19 19 N 1.31625 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00436 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46830 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47193 * 119.99833 * 20 18 16 23 23 H 1.48499 * 109.47284 * 239.99950 * 20 18 16 24 24 C 1.47673 * 91.08370 * 24.29618 * 15 14 13 25 25 C 1.47347 * 121.05307 * 180.02562 * 9 7 6 26 26 O 1.42905 * 109.47448 * 124.99897 * 4 2 1 27 27 C 1.42902 * 113.99775 * 269.99799 * 26 4 2 28 28 C 1.52998 * 109.46986 * 179.97438 * 27 26 4 29 29 H 1.07994 * 119.99704 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99428 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47360 * 270.00793 * 3 2 1 32 32 H 1.09007 * 109.46837 * 29.99948 * 3 2 1 33 33 H 1.08999 * 109.47599 * 150.00182 * 3 2 1 34 34 H 1.08999 * 109.46781 * 55.00017 * 6 4 2 35 35 H 1.08996 * 109.46946 * 295.00148 * 6 4 2 36 36 H 1.08991 * 109.59625 * 8.03860 * 10 9 7 37 37 H 1.09003 * 109.59673 * 247.58285 * 10 9 7 38 38 H 1.08997 * 109.49293 * 294.16320 * 11 10 9 39 39 H 1.09000 * 109.49170 * 174.08130 * 11 10 9 40 40 H 1.09005 * 113.79546 * 205.51320 * 14 13 12 41 41 H 1.09003 * 113.78860 * 336.97644 * 14 13 12 42 42 H 0.96993 * 120.00193 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.79086 * 221.44698 * 24 15 14 44 44 H 1.09005 * 113.89787 * 89.98716 * 24 15 14 45 45 H 1.08997 * 109.74671 * 108.72674 * 25 9 7 46 46 H 1.09000 * 109.74367 * 347.99695 * 25 9 7 47 47 H 1.08996 * 109.46850 * 300.00170 * 27 26 4 48 48 H 1.08994 * 109.46838 * 60.00139 * 27 26 4 49 49 H 1.08999 * 109.47183 * 59.99965 * 28 27 26 50 50 H 1.08994 * 109.47214 * 180.02562 * 28 27 26 51 51 H 1.09007 * 109.47223 * 300.00139 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1316 -0.0905 6 6 2.8466 -1.4425 1.3067 7 6 3.5009 -2.7989 1.3601 8 8 3.3550 -3.5791 0.4432 9 7 4.2475 -3.1453 2.4274 10 6 4.4395 -2.2173 3.5527 11 6 4.0774 -2.9405 4.8542 12 8 4.8291 -4.1547 4.9466 13 6 4.5919 -5.0652 3.8765 14 6 5.2143 -6.4509 4.0926 15 7 3.9240 -6.8197 4.7091 16 6 3.5314 -7.7635 5.6202 17 1 2.4949 -7.8301 5.9162 18 6 4.4658 -8.6341 6.1642 19 7 5.7292 -8.5526 5.8039 20 14 3.9304 -9.9211 7.4077 21 1 2.4684 -9.8057 7.6412 22 1 4.2421 -11.2753 6.8838 23 1 4.6549 -9.7061 8.6859 24 6 3.2269 -5.7628 3.9490 25 6 4.8983 -4.4651 2.5036 26 8 2.9710 -1.3308 -1.1042 27 6 2.4139 -1.8757 -2.3021 28 6 3.4679 -1.8531 -3.4109 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 2.2452 1.6198 -1.0277 32 1 1.4744 2.0648 0.5139 33 1 3.0160 1.1748 0.5138 34 1 2.1658 -1.3340 2.1511 35 1 3.6117 -0.6677 1.3550 36 1 3.7929 -1.3492 3.4250 37 1 5.4810 -1.8978 3.5896 38 1 3.0121 -3.1710 4.8580 39 1 4.3144 -2.3005 5.7041 40 1 5.4286 -6.9860 3.1674 41 1 6.0516 -6.4529 4.7905 42 1 6.3820 -9.1611 6.1837 43 1 2.4851 -5.2178 4.5329 44 1 2.8489 -6.0913 2.9809 45 1 5.9756 -4.3520 2.3829 46 1 4.5056 -5.1150 1.7216 47 1 2.0981 -2.9031 -2.1213 48 1 1.5538 -1.2795 -2.6067 49 1 4.3283 -2.4490 -3.1065 50 1 3.0429 -2.2683 -4.3247 51 1 3.7833 -0.8254 -3.5916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570225080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:15 Heat of formation + Delta-G solvation = -39.352809 kcal Electronic energy + Delta-G solvation = -30891.698563 eV Core-core repulsion = 26794.341317 eV Total energy + Delta-G solvation = -4097.357246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.50506 -39.27781 -38.09140 -36.20654 -35.40420 -34.41973 -32.31142 -31.85874 -30.52982 -29.78757 -27.83807 -27.64177 -26.17294 -25.07676 -23.89650 -23.29224 -22.85211 -21.67917 -19.23997 -19.10729 -18.75547 -17.16295 -16.99581 -16.80764 -16.24860 -15.87069 -15.54176 -15.39106 -14.92658 -14.61080 -14.44037 -14.29466 -14.16317 -13.94290 -13.67803 -13.48111 -13.35974 -13.21718 -12.79884 -12.52993 -12.47410 -12.28870 -12.11827 -12.02226 -11.86000 -11.65784 -11.35557 -11.24881 -11.13379 -10.96904 -10.83276 -10.81590 -10.72902 -10.13846 -9.98704 -9.67002 -9.63571 -9.57752 -9.43006 -9.25370 -8.80620 -8.25433 -6.85521 -5.73246 -3.05039 1.81023 2.71642 2.96191 3.41806 3.46500 3.49407 3.57028 4.07280 4.25843 4.46858 4.61388 4.68847 4.75157 4.87407 4.97260 4.98634 5.06206 5.10748 5.14119 5.18690 5.24456 5.28295 5.28683 5.33475 5.39313 5.43528 5.51254 5.60206 5.62604 5.67106 5.70705 5.74767 5.78627 5.85169 5.88070 6.00044 6.09266 6.23340 6.32428 6.39853 6.42774 6.51501 6.62452 6.98373 7.14404 7.21167 7.45322 7.53281 7.83965 8.01329 8.24874 9.07155 9.73636 10.60241 11.44320 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002555 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.090663 B =10957.506013 C =11317.438503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C -0.112 4.112 4 C 0.143 3.857 5 H 0.073 0.927 6 C -0.135 4.135 7 C 0.519 3.481 8 O -0.532 6.532 9 N -0.613 5.613 10 C 0.073 3.927 11 C 0.044 3.956 12 O -0.335 6.335 13 C 0.053 3.947 14 C 0.182 3.818 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.102 3.898 25 C 0.100 3.900 26 O -0.367 6.367 27 C 0.063 3.937 28 C -0.148 4.148 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.043 0.957 44 H 0.041 0.959 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.053 0.947 48 H 0.041 0.959 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 21.729 -12.577 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.148 4.148 3 C -0.168 4.168 4 C 0.084 3.916 5 H 0.091 0.909 6 C -0.175 4.175 7 C 0.307 3.693 8 O -0.409 6.409 9 N -0.348 5.348 10 C -0.050 4.050 11 C -0.034 4.034 12 O -0.253 6.253 13 C 0.011 3.989 14 C 0.056 3.944 15 N -0.328 5.328 16 C -0.347 4.347 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C -0.024 4.024 25 C -0.023 4.023 26 O -0.286 6.286 27 C -0.013 4.013 28 C -0.206 4.206 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.119 0.881 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.929 21.051 -12.679 25.279 hybrid contribution -0.755 -0.683 0.508 1.138 sum -6.684 20.368 -12.170 24.651 Atomic orbital electron populations 1.23792 0.95072 1.02185 1.01122 1.22306 0.95512 0.96676 1.00260 1.20741 1.00082 0.93731 1.02260 1.20731 0.90864 0.93641 0.86333 0.90869 1.21819 1.01238 0.96243 0.98227 1.20397 0.78567 0.88790 0.81504 1.90685 1.61150 1.52757 1.36291 1.48226 1.50752 1.16844 1.18971 1.22441 1.02638 0.92729 0.87204 1.22883 0.96633 0.87439 0.96421 1.88054 1.64850 1.26797 1.45576 1.23772 0.99325 0.91062 0.84735 1.22206 0.92356 0.83398 0.96407 1.45764 1.04027 1.37648 1.45380 1.19016 0.93796 1.07701 1.14181 0.90253 1.24768 0.95537 0.99600 1.00484 1.69807 1.00759 1.39844 1.46352 0.86037 0.77600 0.81235 0.80816 1.20542 1.21762 1.21677 1.23033 0.94150 0.90035 0.95207 1.22279 0.97576 0.83486 0.98974 1.87899 1.38218 1.83279 1.19163 1.22410 0.96078 0.97639 0.85207 1.21707 0.99588 1.02484 0.96786 0.88052 0.88343 0.91396 0.92077 0.91642 0.87727 0.88018 0.89340 0.90461 0.92878 0.88088 0.93845 0.89662 0.93653 0.93899 0.94166 0.90977 0.88088 0.92865 0.94099 0.91701 0.91388 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 13.91 29.01 0.40 -1.00 16 2 C -0.15 -1.25 5.05 -101.07 -0.51 -1.76 16 3 C -0.11 -0.80 9.84 36.01 0.35 -0.45 16 4 C 0.14 1.52 1.86 -27.88 -0.05 1.47 16 5 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 6 C -0.14 -1.37 3.59 -27.88 -0.10 -1.47 16 7 C 0.52 7.34 7.59 -10.99 -0.08 7.26 16 8 O -0.53 -9.37 14.91 -8.85 -0.13 -9.50 16 9 N -0.61 -8.60 3.03 -172.40 -0.52 -9.13 16 10 C 0.07 0.80 6.50 -3.58 -0.02 0.78 16 11 C 0.04 0.59 6.88 37.28 0.26 0.85 16 12 O -0.34 -6.44 10.52 -35.23 -0.37 -6.81 16 13 C 0.05 1.04 1.21 -90.28 -0.11 0.93 16 14 C 0.18 4.40 6.90 -3.18 -0.02 4.37 16 15 N -0.60 -15.99 3.70 -180.29 -0.67 -16.66 16 16 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -27.70 11.39 55.49 0.63 -27.07 16 20 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C 0.10 2.22 8.08 -3.17 -0.03 2.19 16 25 C 0.10 1.66 5.78 -3.61 -0.02 1.64 16 26 O -0.37 -4.50 9.07 -49.64 -0.45 -4.95 16 27 C 0.06 0.68 6.46 37.16 0.24 0.92 16 28 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16 29 H 0.10 0.63 8.04 -52.49 -0.42 0.21 16 30 H 0.10 0.73 7.84 -52.49 -0.41 0.32 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.36 8.06 -51.92 -0.42 -0.06 16 33 H 0.06 0.46 7.02 -51.93 -0.36 0.10 16 34 H 0.10 0.85 7.69 -51.93 -0.40 0.45 16 35 H 0.10 0.88 7.04 -51.93 -0.37 0.51 16 36 H 0.09 0.67 6.03 -51.93 -0.31 0.36 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.73 7.19 -51.93 -0.37 0.36 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 41 H 0.09 2.29 7.17 -51.93 -0.37 1.92 16 42 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.04 0.91 7.27 -51.93 -0.38 0.53 16 44 H 0.04 0.87 7.94 -51.93 -0.41 0.46 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.10 1.81 6.91 -51.93 -0.36 1.45 16 47 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 48 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -34.72 406.53 -8.71 -43.42 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.73 Total: -0.91 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 0.43 Total: 7.92 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.56 Total: -52.85 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.95 Total: -21.26 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.72 -8.71 -43.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570225080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.072 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds