Wall clock time and date at job start Tue Mar 31 2020 22:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 120.00236 * 2 1 4 4 C 1.50700 * 120.00003 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47157 * 4.99696 * 4 2 1 6 6 C 1.53007 * 109.46958 * 244.99624 * 4 2 1 7 7 C 1.50696 * 109.46923 * 174.99870 * 6 4 2 8 8 O 1.21278 * 120.00389 * 359.97438 * 7 6 4 9 9 N 1.34778 * 119.99632 * 180.02562 * 7 6 4 10 10 C 1.47123 * 121.05298 * 359.97437 * 9 7 6 11 11 C 1.53236 * 108.72916 * 127.80991 * 10 9 7 12 12 O 1.43108 * 109.33925 * 54.12580 * 11 10 9 13 13 C 1.42486 * 113.97029 * 300.02851 * 12 11 10 14 14 C 1.53437 * 113.81706 * 189.53909 * 13 12 11 15 15 N 1.47678 * 85.97945 * 91.24231 * 14 13 12 16 16 C 1.36932 * 134.45726 * 204.28999 * 15 14 13 17 17 H 1.08000 * 120.00308 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00229 * 0.02562 * 16 15 14 19 19 N 1.31625 * 119.99822 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00436 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46830 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47193 * 119.99833 * 20 18 16 23 23 H 1.48499 * 109.47284 * 239.99950 * 20 18 16 24 24 C 1.47673 * 91.08370 * 24.29618 * 15 14 13 25 25 C 1.47347 * 121.05307 * 180.02562 * 9 7 6 26 26 O 1.42905 * 109.47448 * 124.99897 * 4 2 1 27 27 C 1.42902 * 113.99775 * 269.99799 * 26 4 2 28 28 C 1.52998 * 109.46986 * 179.97438 * 27 26 4 29 29 H 1.07994 * 119.99704 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99428 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47360 * 270.00793 * 3 2 1 32 32 H 1.09007 * 109.46837 * 29.99948 * 3 2 1 33 33 H 1.08999 * 109.47599 * 150.00182 * 3 2 1 34 34 H 1.08999 * 109.46781 * 55.00017 * 6 4 2 35 35 H 1.08996 * 109.46946 * 295.00148 * 6 4 2 36 36 H 1.08991 * 109.59625 * 8.03860 * 10 9 7 37 37 H 1.09003 * 109.59673 * 247.58285 * 10 9 7 38 38 H 1.08997 * 109.49293 * 294.16320 * 11 10 9 39 39 H 1.09000 * 109.49170 * 174.08130 * 11 10 9 40 40 H 1.09005 * 113.79546 * 205.51320 * 14 13 12 41 41 H 1.09003 * 113.78860 * 336.97644 * 14 13 12 42 42 H 0.96993 * 120.00193 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.79086 * 221.44698 * 24 15 14 44 44 H 1.09005 * 113.89787 * 89.98716 * 24 15 14 45 45 H 1.08997 * 109.74671 * 108.72674 * 25 9 7 46 46 H 1.09000 * 109.74367 * 347.99695 * 25 9 7 47 47 H 1.08996 * 109.46850 * 300.00170 * 27 26 4 48 48 H 1.08994 * 109.46838 * 60.00139 * 27 26 4 49 49 H 1.08999 * 109.47183 * 59.99965 * 28 27 26 50 50 H 1.08994 * 109.47214 * 180.02562 * 28 27 26 51 51 H 1.09007 * 109.47223 * 300.00139 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1316 -0.0905 6 6 2.8466 -1.4425 1.3067 7 6 3.5009 -2.7989 1.3601 8 8 3.3550 -3.5791 0.4432 9 7 4.2475 -3.1453 2.4274 10 6 4.4395 -2.2173 3.5527 11 6 4.0774 -2.9405 4.8542 12 8 4.8291 -4.1547 4.9466 13 6 4.5919 -5.0652 3.8765 14 6 5.2143 -6.4509 4.0926 15 7 3.9240 -6.8197 4.7091 16 6 3.5314 -7.7635 5.6202 17 1 2.4949 -7.8301 5.9162 18 6 4.4658 -8.6341 6.1642 19 7 5.7292 -8.5526 5.8039 20 14 3.9304 -9.9211 7.4077 21 1 2.4684 -9.8057 7.6412 22 1 4.2421 -11.2753 6.8838 23 1 4.6549 -9.7061 8.6859 24 6 3.2269 -5.7628 3.9490 25 6 4.8983 -4.4651 2.5036 26 8 2.9710 -1.3308 -1.1042 27 6 2.4139 -1.8757 -2.3021 28 6 3.4679 -1.8531 -3.4109 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 2.2452 1.6198 -1.0277 32 1 1.4744 2.0648 0.5139 33 1 3.0160 1.1748 0.5138 34 1 2.1658 -1.3340 2.1511 35 1 3.6117 -0.6677 1.3550 36 1 3.7929 -1.3492 3.4250 37 1 5.4810 -1.8978 3.5896 38 1 3.0121 -3.1710 4.8580 39 1 4.3144 -2.3005 5.7041 40 1 5.4286 -6.9860 3.1674 41 1 6.0516 -6.4529 4.7905 42 1 6.3820 -9.1611 6.1837 43 1 2.4851 -5.2178 4.5329 44 1 2.8489 -6.0913 2.9809 45 1 5.9756 -4.3520 2.3829 46 1 4.5056 -5.1150 1.7216 47 1 2.0981 -2.9031 -2.1213 48 1 1.5538 -1.2795 -2.6067 49 1 4.3283 -2.4490 -3.1065 50 1 3.0429 -2.2683 -4.3247 51 1 3.7833 -0.8254 -3.5916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570225080.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:14 Heat of formation + Delta-G solvation = -61.995628 kcal Electronic energy + Delta-G solvation = -30892.680429 eV Core-core repulsion = 26794.341317 eV Total energy + Delta-G solvation = -4098.339112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77655 -40.47563 -39.14251 -37.73249 -36.09925 -35.70476 -34.29248 -32.75134 -31.70757 -30.89701 -29.32458 -28.22257 -27.73739 -26.90012 -24.97333 -24.53319 -23.65721 -23.33076 -20.67049 -19.97563 -19.81058 -18.83180 -18.15697 -17.82555 -17.59964 -17.07223 -16.85026 -16.54488 -16.37537 -15.93505 -15.72827 -15.49183 -15.11831 -15.03038 -14.97533 -14.69240 -14.43553 -14.13257 -14.07825 -13.88009 -13.41337 -13.37900 -13.17592 -13.09202 -12.93689 -12.80729 -12.78385 -12.53898 -12.43760 -12.41583 -12.08997 -11.96026 -11.91045 -11.77154 -11.72567 -11.45966 -11.02040 -10.79263 -10.74593 -10.45203 -10.07351 -9.52240 -8.96450 -7.92592 -5.26888 1.20524 1.43615 1.45730 1.55760 1.64870 1.88075 2.44317 2.69633 2.79008 3.22291 3.31676 3.39757 3.56026 3.80599 3.89059 3.92228 3.98309 4.13408 4.15628 4.21062 4.31711 4.34602 4.38585 4.41315 4.50264 4.53138 4.58455 4.66516 4.70005 4.71976 4.76702 4.78709 4.88678 4.89152 4.95742 4.97582 5.03021 5.07832 5.13256 5.19463 5.21559 5.24762 5.34435 5.44972 5.65920 5.83530 5.87876 6.32709 6.37457 6.42260 6.87773 7.16328 7.56161 8.49617 9.24605 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.002555 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.090663 B =10957.506013 C =11317.438503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.154 4.154 3 C -0.109 4.109 4 C 0.139 3.861 5 H 0.054 0.946 6 C -0.127 4.127 7 C 0.514 3.486 8 O -0.575 6.575 9 N -0.615 5.615 10 C 0.076 3.924 11 C 0.035 3.965 12 O -0.367 6.367 13 C 0.086 3.914 14 C 0.175 3.825 15 N -0.631 5.631 16 C -0.237 4.237 17 H 0.081 0.919 18 C -0.066 4.066 19 N -0.952 5.952 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.105 3.895 25 C 0.110 3.890 26 O -0.384 6.384 27 C 0.062 3.938 28 C -0.145 4.145 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.132 0.868 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.250 0.750 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.032 0.968 48 H 0.055 0.945 49 H 0.046 0.954 50 H 0.085 0.915 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 24.745 -12.298 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.166 4.166 4 C 0.081 3.919 5 H 0.072 0.928 6 C -0.167 4.167 7 C 0.304 3.696 8 O -0.454 6.454 9 N -0.348 5.348 10 C -0.046 4.046 11 C -0.042 4.042 12 O -0.285 6.285 13 C 0.044 3.956 14 C 0.050 3.950 15 N -0.358 5.358 16 C -0.365 4.365 17 H 0.099 0.901 18 C -0.259 4.259 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.190 1.190 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.021 4.021 25 C -0.014 4.014 26 O -0.303 6.303 27 C -0.015 4.015 28 C -0.202 4.202 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.150 0.850 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.104 0.896 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.238 24.122 -12.399 28.071 hybrid contribution -0.413 -1.578 0.408 1.681 sum -7.650 22.545 -11.991 26.657 Atomic orbital electron populations 1.23952 0.94898 1.02882 0.99734 1.22215 0.95664 0.96100 1.01510 1.20748 1.00295 0.93230 1.02297 1.20808 0.90594 0.94332 0.86202 0.92832 1.21900 1.02003 0.93773 0.98979 1.21182 0.77833 0.89928 0.80627 1.90676 1.62447 1.54362 1.37889 1.48313 1.50400 1.16025 1.20107 1.22666 1.04656 0.92803 0.84437 1.23284 0.95904 0.85695 0.99278 1.87993 1.66091 1.28799 1.45626 1.23104 0.96209 0.89751 0.86537 1.22099 0.90925 0.87002 0.95009 1.46130 1.05779 1.38091 1.45787 1.19403 0.94060 1.08312 1.14770 0.90077 1.25665 0.95630 1.01862 1.02706 1.70005 1.01745 1.40644 1.47637 0.84956 0.77844 0.78135 0.78017 1.19036 1.21739 1.21569 1.23118 0.95404 0.89013 0.94519 1.21889 0.98270 0.85066 0.96159 1.87864 1.39288 1.83335 1.19850 1.22457 0.96996 0.96694 0.85340 1.21705 0.98635 1.02811 0.97013 0.86308 0.88718 0.91826 0.90502 0.91376 0.84961 0.85689 0.84896 0.89069 0.93158 0.84984 0.94522 0.93097 0.94088 0.93117 0.94070 0.90106 0.89795 0.94914 0.92696 0.93467 0.89604 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 13.91 67.78 0.94 -1.29 16 2 C -0.15 -2.22 5.05 -16.49 -0.08 -2.31 16 3 C -0.11 -1.22 9.84 71.24 0.70 -0.52 16 4 C 0.14 2.73 1.86 29.85 0.06 2.79 16 5 H 0.05 1.24 7.25 -2.39 -0.02 1.22 16 6 C -0.13 -2.18 3.59 29.85 0.11 -2.07 16 7 C 0.51 13.74 7.59 87.66 0.67 14.41 16 8 O -0.57 -20.36 14.91 10.75 0.16 -20.20 16 9 N -0.61 -16.07 3.03 -817.76 -2.48 -18.55 16 10 C 0.08 1.38 6.50 86.34 0.56 1.94 16 11 C 0.04 0.84 6.88 72.06 0.50 1.34 16 12 O -0.37 -13.85 10.52 -148.98 -1.57 -15.41 16 13 C 0.09 3.42 1.21 -10.48 -0.01 3.41 16 14 C 0.18 8.87 6.90 86.29 0.60 9.47 16 15 N -0.63 -34.55 3.70 -729.18 -2.70 -37.25 16 16 C -0.24 -14.01 10.70 84.04 0.90 -13.11 16 17 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 19 N -0.95 -59.23 11.39 21.65 0.25 -58.99 16 20 Si 0.98 47.15 29.55 68.60 2.03 49.17 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 C 0.10 4.61 8.08 86.31 0.70 5.31 16 25 C 0.11 3.67 5.78 86.20 0.50 4.17 16 26 O -0.38 -9.06 9.07 -135.21 -1.23 -10.29 16 27 C 0.06 1.31 6.46 71.98 0.46 1.78 16 28 C -0.14 -2.61 10.28 71.98 0.74 -1.87 16 29 H 0.12 1.08 8.04 -2.91 -0.02 1.06 16 30 H 0.09 1.25 7.84 -2.91 -0.02 1.22 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.08 0.61 8.06 -2.38 -0.02 0.59 16 33 H 0.07 0.71 7.02 -2.39 -0.02 0.70 16 34 H 0.13 1.55 7.69 -2.39 -0.02 1.53 16 35 H 0.13 1.61 7.04 -2.39 -0.02 1.59 16 36 H 0.13 1.26 6.03 -2.39 -0.01 1.25 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.05 1.25 7.19 -2.39 -0.02 1.23 16 39 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.04 1.87 8.09 -2.38 -0.02 1.85 16 41 H 0.05 2.90 7.17 -2.39 -0.02 2.88 16 42 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 43 H 0.05 2.13 7.27 -2.39 -0.02 2.11 16 44 H 0.04 1.82 7.94 -2.38 -0.02 1.80 16 45 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 46 H 0.08 3.10 6.91 -2.39 -0.02 3.08 16 47 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 48 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -79.07 406.53 3.16 -75.91 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.90 Total: 15.57 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.80 Total: 20.03 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.93 Total: -114.78 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.63 Total: -45.90 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.17 kcal Total: -79.07 3.16 -75.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570225080.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.914 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds