Wall clock time and date at job start Tue Mar 31 2020 22:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99788 * 2 1 4 4 C 1.50699 * 119.99969 * 180.02562 * 2 1 3 5 5 H 1.08997 * 109.47180 * 354.99064 * 4 2 1 6 6 C 1.52999 * 109.47302 * 114.99726 * 4 2 1 7 7 C 1.50703 * 109.47146 * 184.99662 * 6 4 2 8 8 O 1.21283 * 119.99665 * 0.02562 * 7 6 4 9 9 N 1.34769 * 120.00245 * 179.97438 * 7 6 4 10 10 C 1.47134 * 121.05457 * 0.02646 * 9 7 6 11 11 C 1.53220 * 108.73143 * 232.19539 * 10 9 7 12 12 O 1.43098 * 109.34749 * 305.88400 * 11 10 9 13 13 C 1.42591 * 113.99614 * 59.96430 * 12 11 10 14 14 C 1.53469 * 113.77836 * 73.13878 * 13 12 11 15 15 N 1.47655 * 85.97486 * 91.37037 * 14 13 12 16 16 C 1.36937 * 134.45988 * 204.31919 * 15 14 13 17 17 H 1.08000 * 120.00111 * 179.97438 * 16 15 14 18 18 C 1.38817 * 120.00050 * 359.96000 * 16 15 14 19 19 N 1.31625 * 119.99446 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00227 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46998 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46926 * 120.00634 * 20 18 16 23 23 H 1.48499 * 109.47388 * 240.00576 * 20 18 16 24 24 C 1.47672 * 91.08966 * 24.29215 * 15 14 13 25 25 C 1.47338 * 121.05939 * 179.97438 * 9 7 6 26 26 O 1.42903 * 109.46814 * 234.99838 * 4 2 1 27 27 C 1.42900 * 114.00082 * 89.99883 * 26 4 2 28 28 C 1.53002 * 109.46948 * 180.02562 * 27 26 4 29 29 H 1.07997 * 120.00136 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00110 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47255 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47430 * 300.00132 * 3 2 1 33 33 H 1.09000 * 109.47649 * 60.00425 * 3 2 1 34 34 H 1.09006 * 109.47003 * 64.99860 * 6 4 2 35 35 H 1.08997 * 109.47280 * 304.99930 * 6 4 2 36 36 H 1.08999 * 109.59268 * 351.97427 * 10 9 7 37 37 H 1.08998 * 109.59176 * 112.41910 * 10 9 7 38 38 H 1.08998 * 109.48927 * 65.85201 * 11 10 9 39 39 H 1.09001 * 109.48660 * 185.91897 * 11 10 9 40 40 H 1.09002 * 113.79324 * 205.63994 * 14 13 12 41 41 H 1.09004 * 113.78757 * 337.10490 * 14 13 12 42 42 H 0.97002 * 119.99522 * 179.97438 * 19 18 16 43 43 H 1.09009 * 113.79512 * 221.44362 * 24 15 14 44 44 H 1.08995 * 113.89900 * 89.98501 * 24 15 14 45 45 H 1.09002 * 109.75027 * 251.25779 * 25 9 7 46 46 H 1.09000 * 109.74653 * 11.93334 * 25 9 7 47 47 H 1.08998 * 109.47287 * 300.00022 * 27 26 4 48 48 H 1.09001 * 109.47043 * 60.00098 * 27 26 4 49 49 H 1.09001 * 109.47212 * 60.00147 * 28 27 26 50 50 H 1.09004 * 109.46989 * 180.02562 * 28 27 26 51 51 H 1.08999 * 109.47395 * 299.99624 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 1 1.3586 -2.1316 0.0888 6 6 2.8464 -1.4415 -1.3080 7 6 3.5009 -2.7979 -1.3625 8 8 3.3550 -3.5787 -0.4460 9 7 4.2474 -3.1435 -2.4300 10 6 4.4393 -2.2146 -3.5548 11 6 4.0771 -2.9368 -4.8566 12 8 4.8284 -4.1511 -4.9500 13 6 4.5914 -5.0634 -3.8801 14 6 3.2261 -5.7605 -3.9522 15 7 3.9226 -6.8178 -4.7121 16 6 3.5296 -7.7613 -5.6233 17 1 4.2562 -8.4390 -6.0466 18 6 2.1971 -7.8470 -6.0029 19 7 1.3116 -7.0209 -5.4872 20 14 1.6608 -9.1345 -7.2455 21 1 2.8383 -9.9335 -7.6699 22 1 0.6522 -10.0309 -6.6253 23 1 1.0653 -8.4629 -8.4285 24 6 5.2132 -6.4495 -4.0960 25 6 4.8982 -4.4631 -2.5073 26 8 2.9710 -1.3316 1.1030 27 6 2.4140 -1.8774 2.3005 28 6 3.4680 -1.8556 3.4093 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 3.1352 1.1060 -0.0005 32 1 1.8001 1.8767 -0.8900 33 1 1.8002 1.8767 0.8900 34 1 3.6117 -0.6666 -1.3557 35 1 2.1657 -1.3323 -2.1522 36 1 3.7929 -1.3464 -3.4262 37 1 5.4808 -1.8953 -3.5915 38 1 3.0117 -3.1670 -4.8605 39 1 4.3141 -2.2961 -5.7060 40 1 2.8491 -6.0905 -2.9841 41 1 2.4844 -5.2154 -4.5360 42 1 0.3805 -7.0805 -5.7527 43 1 6.0504 -6.4519 -4.7942 44 1 5.4292 -6.9836 -3.1708 45 1 5.9756 -4.3501 -2.3869 46 1 4.5065 -5.1133 -1.7250 47 1 1.5538 -1.2815 2.6056 48 1 2.0982 -2.9048 2.1190 49 1 3.7834 -0.8281 3.5907 50 1 3.0433 -2.2724 4.3226 51 1 4.3284 -2.4514 3.1045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570225081.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:17 Heat of formation + Delta-G solvation = -62.915227 kcal Electronic energy + Delta-G solvation = -31096.641527 eV Core-core repulsion = 26998.262538 eV Total energy + Delta-G solvation = -4098.378989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.75827 -40.47229 -39.15158 -37.72605 -36.10165 -35.69169 -34.31756 -32.75935 -31.68896 -30.88930 -29.34625 -28.23158 -27.73856 -26.87974 -25.00002 -24.56186 -23.66201 -23.30093 -20.67103 -19.97804 -19.82562 -18.84498 -18.15214 -17.83916 -17.59476 -17.11232 -16.80892 -16.53057 -16.41498 -15.89403 -15.73627 -15.51932 -15.12197 -15.00354 -14.89711 -14.73868 -14.50192 -14.13112 -14.09325 -13.91070 -13.41096 -13.37376 -13.14592 -13.09628 -12.93559 -12.81330 -12.78611 -12.56440 -12.48886 -12.45320 -12.06540 -11.95659 -11.93096 -11.79479 -11.72964 -11.43675 -10.99854 -10.81085 -10.75578 -10.46912 -10.07883 -9.50939 -8.96694 -7.93180 -5.27632 1.18201 1.42453 1.44355 1.54750 1.63991 1.90576 2.43815 2.65086 2.76894 3.24428 3.32131 3.41156 3.62873 3.77596 3.88079 3.90484 3.96490 4.11920 4.17016 4.20682 4.33235 4.34106 4.39680 4.42093 4.49769 4.58163 4.61525 4.64262 4.69345 4.74284 4.78713 4.80639 4.87363 4.88281 4.95485 4.96529 5.02892 5.07886 5.10699 5.20039 5.21734 5.24549 5.34706 5.44500 5.63596 5.82501 5.86440 6.30509 6.33755 6.40015 6.86596 7.16112 7.56067 8.49469 9.23627 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.002827 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.224222 B = 9903.668048 C =10069.898864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C -0.109 4.109 4 C 0.139 3.861 5 H 0.048 0.952 6 C -0.127 4.127 7 C 0.513 3.487 8 O -0.575 6.575 9 N -0.616 5.616 10 C 0.079 3.921 11 C 0.038 3.962 12 O -0.363 6.363 13 C 0.080 3.920 14 C 0.153 3.847 15 N -0.634 5.634 16 C -0.232 4.232 17 H 0.087 0.913 18 C -0.070 4.070 19 N -0.956 5.956 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.290 1.290 24 C 0.133 3.867 25 C 0.110 3.890 26 O -0.381 6.381 27 C 0.060 3.940 28 C -0.143 4.143 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.033 0.967 39 H 0.135 0.865 40 H 0.007 0.993 41 H 0.041 0.959 42 H 0.247 0.753 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.030 0.970 49 H 0.068 0.932 50 H 0.085 0.915 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.225 21.000 11.557 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.153 4.153 3 C -0.165 4.165 4 C 0.081 3.919 5 H 0.066 0.934 6 C -0.166 4.166 7 C 0.303 3.697 8 O -0.455 6.455 9 N -0.350 5.350 10 C -0.043 4.043 11 C -0.039 4.039 12 O -0.281 6.281 13 C 0.038 3.962 14 C 0.027 3.973 15 N -0.361 5.361 16 C -0.360 4.360 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.605 5.605 20 Si 0.811 3.189 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.217 1.217 24 C 0.008 3.992 25 C -0.014 4.014 26 O -0.300 6.300 27 C -0.016 4.016 28 C -0.200 4.200 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.120 0.880 38 H 0.051 0.949 39 H 0.152 0.848 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.088 0.912 50 H 0.104 0.896 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.284 20.442 11.673 23.927 hybrid contribution -1.314 -1.413 -0.415 1.974 sum 2.970 19.029 11.258 22.308 Atomic orbital electron populations 1.23925 0.95077 1.02793 0.99996 1.22240 0.95607 0.96198 1.01294 1.20730 1.00116 0.93023 1.02670 1.20781 0.90579 0.94279 0.86274 0.93382 1.21871 1.01961 0.94030 0.98751 1.21164 0.77793 0.89945 0.80814 1.90668 1.62315 1.54297 1.38184 1.48291 1.50502 1.16263 1.19942 1.22653 1.04881 0.92586 0.84168 1.23190 0.95341 0.85792 0.99528 1.87894 1.65627 1.28682 1.45926 1.23180 0.96656 0.89665 0.86689 1.22496 0.94181 0.88200 0.92434 1.46185 1.05227 1.38706 1.45956 1.19487 0.93237 1.08812 1.14511 0.89554 1.25679 0.95794 1.01972 1.02789 1.70044 1.01641 1.40924 1.47895 0.84948 0.78026 0.78069 0.77906 1.18720 1.22012 1.21681 1.22714 0.90264 0.89173 0.97054 1.21947 0.98609 0.84858 0.96003 1.87845 1.39139 1.83267 1.19785 1.22472 0.97142 0.96566 0.85420 1.21697 0.98539 1.02910 0.96837 0.86132 0.89103 0.91804 0.90045 0.91291 0.85306 0.85672 0.85486 0.88030 0.94904 0.84778 0.97508 0.94039 0.94401 0.91502 0.91343 0.88734 0.90267 0.92782 0.95176 0.91249 0.89598 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 13.95 67.78 0.95 -1.93 16 2 C -0.15 -2.64 5.05 -16.49 -0.08 -2.72 16 3 C -0.11 -1.40 9.69 71.23 0.69 -0.71 16 4 C 0.14 3.19 1.78 29.85 0.05 3.24 16 5 H 0.05 1.32 7.25 -2.39 -0.02 1.31 16 6 C -0.13 -2.61 3.61 29.85 0.11 -2.50 16 7 C 0.51 15.36 7.59 87.66 0.67 16.03 16 8 O -0.58 -22.20 14.91 10.74 0.16 -22.04 16 9 N -0.62 -17.47 3.03 -817.77 -2.48 -19.94 16 10 C 0.08 1.59 6.50 86.33 0.56 2.15 16 11 C 0.04 1.06 6.88 72.06 0.50 1.55 16 12 O -0.36 -13.62 10.52 -148.98 -1.57 -15.19 16 13 C 0.08 3.16 1.22 -10.47 -0.01 3.15 16 14 C 0.15 7.84 6.65 86.31 0.57 8.42 16 15 N -0.63 -34.55 3.70 -729.22 -2.70 -37.25 16 16 C -0.23 -13.65 10.70 84.03 0.90 -12.75 16 17 H 0.09 4.82 7.83 -2.91 -0.02 4.80 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.96 -60.07 11.39 21.65 0.25 -59.82 16 20 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 24 C 0.13 5.63 8.34 86.30 0.72 6.35 16 25 C 0.11 3.61 5.78 86.20 0.50 4.11 16 26 O -0.38 -9.74 9.01 -135.20 -1.22 -10.95 16 27 C 0.06 1.40 6.46 71.98 0.46 1.87 16 28 C -0.14 -2.71 10.28 71.98 0.74 -1.97 16 29 H 0.12 1.44 8.05 -2.91 -0.02 1.42 16 30 H 0.09 1.58 7.84 -2.91 -0.02 1.55 16 31 H 0.06 0.87 7.50 -2.39 -0.02 0.86 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.13 1.95 7.51 -2.38 -0.02 1.93 16 35 H 0.13 2.09 7.69 -2.39 -0.02 2.07 16 36 H 0.13 1.61 6.03 -2.39 -0.01 1.60 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.03 1.09 7.19 -2.39 -0.02 1.07 16 39 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 40 H 0.01 0.40 7.94 -2.39 -0.02 0.38 16 41 H 0.04 2.38 6.31 -2.38 -0.02 2.37 16 42 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 44 H 0.07 2.65 8.09 -2.39 -0.02 2.63 16 45 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.08 2.97 6.91 -2.39 -0.02 2.96 16 47 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.03 0.82 8.08 -2.39 -0.02 0.80 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -80.38 407.38 3.16 -77.22 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.89 Total: 18.06 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 7.79 Total: 20.60 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -4.93 Total: -117.01 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -2.63 Total: -48.19 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -80.38 3.16 -77.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570225081.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.306 kcal (2) G-P(sol) polarization free energy of solvation -80.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds