Wall clock time and date at job start Tue Mar 31 2020 20:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47038 * 2 1 4 4 C 1.46494 * 120.00092 * 269.99769 * 3 2 1 5 5 C 1.50699 * 109.47325 * 270.00258 * 4 3 2 6 6 H 1.07992 * 120.00089 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99800 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99592 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00232 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47360 * 90.00297 * 9 7 5 11 11 H 1.48506 * 109.47111 * 210.00482 * 9 7 5 12 12 H 1.48497 * 109.47094 * 330.00097 * 9 7 5 13 13 C 1.34785 * 119.99815 * 89.99976 * 3 2 1 14 14 O 1.21277 * 119.99774 * 179.97438 * 13 3 2 15 15 C 1.50690 * 120.00017 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47124 * 179.97438 * 15 13 3 17 17 C 1.45822 * 110.99851 * 180.99673 * 16 15 13 18 18 H 1.08995 * 108.73164 * 35.49843 * 17 16 15 19 19 C 1.51428 * 117.11092 * 270.35270 * 17 16 15 20 20 C 1.53777 * 107.34973 * 178.94525 * 19 17 16 21 21 C 1.52574 * 111.37786 * 57.28714 * 20 19 17 22 22 C 1.53703 * 111.49447 * 305.15629 * 21 20 19 23 23 C 1.51917 * 107.28491 * 58.11091 * 22 21 20 24 24 H 1.08998 * 110.99592 * 56.86140 * 23 22 21 25 25 C 1.53651 * 115.25737 * 184.22663 * 23 22 21 26 26 C 1.48617 * 111.00004 * 299.86997 * 16 15 13 27 27 H 1.08993 * 109.92905 * 114.24115 * 26 16 15 28 28 C 1.50707 * 109.92822 * 353.11746 * 26 16 15 29 29 O 1.20822 * 119.99688 * 304.39297 * 28 26 16 30 30 O 1.34228 * 119.99929 * 124.39181 * 28 26 16 31 31 H 1.08996 * 109.47326 * 60.00118 * 1 2 3 32 32 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47486 * 299.99854 * 1 2 3 34 34 H 1.09001 * 109.46981 * 240.00001 * 2 1 3 35 35 H 1.09003 * 109.46685 * 119.99917 * 2 1 3 36 36 H 1.09003 * 109.47387 * 30.00233 * 4 3 2 37 37 H 1.09004 * 109.47059 * 150.00292 * 4 3 2 38 38 H 0.97005 * 120.00288 * 179.97438 * 8 7 5 39 39 H 1.09003 * 109.47560 * 60.00145 * 15 13 3 40 40 H 1.09006 * 109.47261 * 300.00056 * 15 13 3 41 41 H 1.09001 * 109.88450 * 59.48022 * 19 17 16 42 42 H 1.09001 * 109.94127 * 298.43821 * 19 17 16 43 43 H 1.09003 * 109.09480 * 296.80362 * 20 19 17 44 44 H 1.08999 * 109.09954 * 177.78040 * 20 19 17 45 45 H 1.08998 * 109.07614 * 184.63777 * 21 20 19 46 46 H 1.09002 * 109.07365 * 65.67500 * 21 20 19 47 47 H 1.08999 * 109.89269 * 298.66310 * 22 21 20 48 48 H 1.09005 * 109.88783 * 177.55478 * 22 21 20 49 49 H 1.08998 * 110.95131 * 272.46113 * 25 23 22 50 50 H 1.08993 * 110.95021 * 36.18843 * 25 23 22 51 51 H 0.96697 * 116.99984 * 180.02562 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3905 -2.8774 8 7 5.3915 2.1842 -3.2568 9 14 3.0130 3.4360 -3.9286 10 1 3.1156 4.8561 -3.5068 11 1 3.4066 3.3137 -5.3554 12 1 1.6135 2.9693 -3.7596 13 6 2.2429 2.0166 1.1673 14 8 2.6476 3.1598 1.1673 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2058 3.5889 17 6 2.1021 1.5424 4.8706 18 1 2.3782 0.4928 4.7705 19 6 0.7244 1.6540 5.4890 20 6 0.7471 0.8598 6.8056 21 6 1.8338 1.3726 7.7458 22 6 3.2124 1.3726 7.0662 23 6 3.1046 2.2442 5.8266 24 1 2.7685 3.2487 6.0836 25 6 4.3633 2.2910 4.9466 26 6 3.7357 2.6263 3.5442 27 1 3.8011 3.6975 3.3541 28 6 4.4614 1.8677 2.4629 29 8 4.4531 0.6595 2.4629 30 8 5.1170 2.5344 1.4998 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 1.5817 1.6877 -2.0284 37 1 2.0955 3.1410 -1.1383 38 1 5.7177 2.5747 -4.0827 39 1 2.6229 0.4187 2.5299 40 1 0.9444 1.0113 2.5302 41 1 -0.0202 1.2317 4.8142 42 1 0.4910 2.6994 5.6907 43 1 0.9333 -0.1913 6.5849 44 1 -0.2220 0.9539 7.2956 45 1 1.8717 0.7341 8.6284 46 1 1.5882 2.3891 8.0533 47 1 3.4860 0.3564 6.7824 48 1 3.9603 1.7833 7.7446 49 1 5.0445 3.0731 5.2820 50 1 4.8627 1.3224 4.9288 51 1 5.5672 2.0047 0.8277 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603736720.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:49 Heat of formation + Delta-G solvation = -111.372004 kcal Electronic energy + Delta-G solvation = -32655.875790 eV Core-core repulsion = 28555.395557 eV Total energy + Delta-G solvation = -4100.480233 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33898 -39.21548 -38.66076 -36.05652 -35.45706 -34.99994 -32.94566 -32.57413 -30.44996 -30.04223 -29.16575 -27.99979 -25.83709 -24.34720 -22.94838 -22.31633 -21.51584 -21.40851 -20.37842 -19.73506 -18.22449 -17.77335 -16.95346 -16.58675 -16.42525 -16.11199 -15.47496 -15.20646 -14.96878 -14.50793 -14.43544 -14.24441 -13.85916 -13.64730 -13.44849 -13.24686 -12.91816 -12.80726 -12.53396 -12.45737 -12.30769 -12.16638 -12.01239 -11.80449 -11.72100 -11.50321 -11.38254 -11.29839 -10.98728 -10.94722 -10.77927 -10.72548 -10.66768 -10.54271 -10.48874 -10.18974 -10.11099 -10.05218 -9.55507 -8.97945 -8.59459 -8.24398 -7.68020 -6.10635 -4.08372 2.48848 3.29156 3.34939 3.36170 3.37985 3.52439 3.56350 4.01192 4.30496 4.38841 4.39726 4.56917 4.82716 4.87054 5.00788 5.08920 5.21982 5.24780 5.26140 5.28323 5.28818 5.35258 5.38178 5.42242 5.59012 5.61849 5.65216 5.70107 5.73712 5.75640 5.76725 5.88593 5.91373 5.93678 6.01161 6.03409 6.06737 6.16642 6.18840 6.28739 6.42548 6.68812 6.77774 6.91307 7.00344 7.11596 7.38432 7.61016 8.27146 8.42191 8.47512 8.89349 8.99841 9.50916 11.02374 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.003777 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.607991 B = 7411.585061 C = 8216.201782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.590 5.590 4 C 0.218 3.782 5 C -0.523 4.523 6 H 0.072 0.928 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.500 3.500 14 O -0.514 6.514 15 C -0.006 4.006 16 N -0.472 5.472 17 C 0.065 3.935 18 H 0.053 0.947 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.108 4.108 23 C -0.093 4.093 24 H 0.091 0.909 25 C -0.124 4.124 26 C 0.089 3.911 27 H 0.122 0.878 28 C 0.474 3.526 29 O -0.534 6.534 30 O -0.484 6.484 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.090 -3.787 20.130 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.097 3.903 5 C -0.561 4.561 6 H 0.090 0.910 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.286 3.714 14 O -0.390 6.390 15 C -0.137 4.137 16 N -0.198 5.198 17 C -0.044 4.044 18 H 0.071 0.929 19 C -0.137 4.137 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.146 4.146 23 C -0.112 4.112 24 H 0.110 0.890 25 C -0.162 4.162 26 C -0.019 4.019 27 H 0.140 0.860 28 C 0.317 3.683 29 O -0.426 6.426 30 O -0.294 6.294 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.105 0.895 50 H 0.096 0.904 51 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -8.266 -2.760 20.166 21.969 hybrid contribution 0.229 -0.684 -1.346 1.527 sum -8.037 -3.444 18.821 20.753 Atomic orbital electron populations 1.22229 0.96772 1.01540 1.02187 1.21440 0.93337 0.83950 1.03124 1.47855 1.64292 1.13265 1.06816 1.19629 0.97286 0.93360 0.80017 1.21235 0.95257 1.32597 1.07031 0.91018 1.24823 0.94968 0.95759 0.97314 1.69879 1.15075 1.45038 1.23631 0.86855 0.81488 0.81657 0.79703 1.19908 1.21199 1.19194 1.20154 0.79137 0.87187 0.84965 1.90725 1.44259 1.17156 1.86871 1.22946 1.03731 0.96774 0.90224 1.63693 1.16425 1.38237 1.01407 1.22223 0.96746 0.97011 0.88383 0.92921 1.21258 0.95489 1.01306 0.95685 1.21545 0.98746 0.99775 0.95441 1.21535 0.94450 1.01536 0.98059 1.21447 0.97171 0.99792 0.96183 1.22067 0.94543 1.00126 0.94462 0.89046 1.23012 0.97756 1.03041 0.92411 1.22962 0.86395 1.02002 0.90566 0.85971 1.23631 0.76000 0.86372 0.82276 1.90566 1.59373 1.16132 1.76568 1.84569 1.62616 1.44932 1.37245 0.92211 0.91991 0.93022 0.89805 0.91481 0.95469 0.94583 0.92598 0.88270 0.88443 0.91759 0.90857 0.92175 0.91732 0.92076 0.91932 0.91620 0.91458 0.89504 0.90383 0.72672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 2 C 0.11 1.76 5.93 -4.04 -0.02 1.74 16 3 N -0.59 -12.32 2.46 -175.07 -0.43 -12.75 16 4 C 0.22 5.31 4.23 -5.20 -0.02 5.29 16 5 C -0.52 -14.55 9.94 -34.44 -0.34 -14.89 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 9 Si 0.88 21.55 27.47 -169.99 -4.67 16.88 16 10 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.50 10.36 5.78 -10.99 -0.06 10.30 16 14 O -0.51 -12.30 12.74 -15.18 -0.19 -12.49 16 15 C -0.01 -0.11 3.40 -4.98 -0.02 -0.12 16 16 N -0.47 -7.20 4.98 -217.72 -1.08 -8.29 16 17 C 0.07 0.77 1.77 -67.87 -0.12 0.65 16 18 H 0.05 0.67 7.51 -51.93 -0.39 0.28 16 19 C -0.10 -0.96 5.93 -27.12 -0.16 -1.12 16 20 C -0.12 -0.90 5.85 -26.55 -0.16 -1.05 16 21 C -0.12 -0.85 5.84 -26.58 -0.16 -1.00 16 22 C -0.11 -0.88 5.62 -26.92 -0.15 -1.03 16 23 C -0.09 -0.95 2.57 -89.62 -0.23 -1.18 16 24 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 25 C -0.12 -1.47 6.18 -24.08 -0.15 -1.62 16 26 C 0.09 1.42 2.84 -65.59 -0.19 1.23 16 27 H 0.12 2.07 7.96 -51.93 -0.41 1.66 16 28 C 0.47 8.92 4.03 36.01 0.14 9.07 16 29 O -0.53 -10.62 14.59 -18.75 -0.27 -10.90 16 30 O -0.48 -9.99 12.08 -46.20 -0.56 -10.55 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 34 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 35 H 0.07 1.04 6.44 -51.93 -0.33 0.70 16 36 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 37 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.10 1.74 4.48 -51.93 -0.23 1.51 16 40 H 0.10 1.41 7.19 -51.93 -0.37 1.04 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.57 8.00 -51.93 -0.42 0.15 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 0.98 7.71 -51.93 -0.40 0.58 16 51 H 0.41 8.32 9.10 45.56 0.41 8.74 16 LS Contribution 388.15 15.07 5.85 5.85 Total: -1.00 -33.11 388.15 -9.83 -42.94 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.90 Total: 9.10 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.35 Total: 6.37 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.74 Total: -47.21 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.02 Total: -33.94 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.11 -9.83 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603736720.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.428 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds