Wall clock time and date at job start Tue Mar 31 2020 22:03:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42900 * 109.47321 * 2 1
4 4 C 1.42903 * 113.99978 * 178.35524 * 3 2 1
5 5 H 1.09001 * 109.47297 * 16.61349 * 4 3 2
6 6 C 1.50700 * 109.46874 * 256.61171 * 4 3 2
7 7 O 1.21275 * 120.00350 * 355.00247 * 6 4 3
8 8 N 1.34778 * 119.99616 * 175.00369 * 6 4 3
9 9 C 1.46505 * 120.00067 * 180.02562 * 8 6 4
10 10 C 1.52999 * 109.47111 * 179.97438 * 9 8 6
11 11 H 1.09003 * 109.89825 * 59.48722 * 10 9 8
12 12 C 1.54472 * 109.82762 * 180.42013 * 10 9 8
13 13 C 1.55509 * 102.38541 * 140.87699 * 12 10 9
14 14 C 1.53877 * 100.75756 * 327.02953 * 13 12 10
15 15 C 1.52381 * 115.67729 * 263.23486 * 14 13 12
16 16 N 1.47266 * 87.70588 * 218.74960 * 15 14 13
17 17 C 1.36942 * 135.93659 * 206.16066 * 16 15 14
18 18 H 1.08002 * 119.99752 * 359.97438 * 17 16 15
19 19 C 1.38810 * 120.00338 * 179.97438 * 17 16 15
20 20 N 1.31623 * 119.99793 * 359.97438 * 19 17 16
21 21 Si 1.86791 * 120.00308 * 179.97438 * 19 17 16
22 22 H 1.48507 * 109.47194 * 59.99881 * 21 19 17
23 23 H 1.48500 * 109.47337 * 179.97438 * 21 19 17
24 24 H 1.48505 * 109.47357 * 300.00333 * 21 19 17
25 25 C 1.47277 * 88.13268 * 26.17601 * 16 15 14
26 26 O 1.42401 * 106.67104 * 34.97613 * 14 13 12
27 27 C 1.53004 * 109.46895 * 136.61523 * 4 3 2
28 28 C 1.52998 * 117.49958 * 2.66586 * 27 4 3
29 29 C 1.52996 * 60.00088 * 252.51148 * 28 27 4
30 30 H 1.08993 * 109.46882 * 59.99954 * 1 2 3
31 31 H 1.08997 * 109.46998 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47030 * 299.99834 * 1 2 3
33 33 H 1.09008 * 109.47197 * 239.99776 * 2 1 3
34 34 H 1.09002 * 109.47454 * 120.00157 * 2 1 3
35 35 H 0.96998 * 120.00403 * 359.97438 * 8 6 4
36 36 H 1.09005 * 109.46912 * 59.99488 * 9 8 6
37 37 H 1.08997 * 109.46671 * 300.00040 * 9 8 6
38 38 H 1.09002 * 110.82675 * 259.09715 * 12 10 9
39 39 H 1.09000 * 110.82555 * 22.45922 * 12 10 9
40 40 H 1.08994 * 111.16097 * 209.15150 * 13 12 10
41 41 H 1.09002 * 111.15846 * 84.90330 * 13 12 10
42 42 H 1.09008 * 113.50966 * 104.03865 * 15 14 13
43 43 H 1.09000 * 113.51284 * 333.46112 * 15 14 13
44 44 H 0.96998 * 120.00194 * 180.02562 * 20 19 17
45 45 H 1.08999 * 113.50954 * 88.53060 * 25 16 15
46 46 H 1.09001 * 113.51279 * 219.05107 * 25 16 15
47 47 H 1.08999 * 115.54780 * 148.37637 * 27 4 3
48 48 H 1.09009 * 117.49641 * 0.02562 * 28 27 4
49 49 H 1.08998 * 117.50034 * 145.02107 * 28 27 4
50 50 H 1.08994 * 117.49948 * 252.51206 * 29 28 27
51 51 H 1.09002 * 117.49655 * 107.48734 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4304 1.4602 0.0375
5 1 3.8781 0.5045 -0.2352
6 6 3.8677 1.8411 1.4285
7 8 3.0386 2.0886 2.2783
8 7 5.1801 1.9066 1.7280
9 6 5.6052 2.2764 3.0804
10 6 7.1335 2.2753 3.1527
11 1 7.5395 2.9863 2.4332
12 6 7.5908 2.6539 4.5788
13 6 8.8025 1.7054 4.8034
14 6 8.3548 0.4722 3.9993
15 6 7.6968 -0.6396 4.8074
16 7 8.4140 -1.6028 3.9549
17 6 8.2172 -2.8965 3.5511
18 1 7.3460 -3.4400 3.8858
19 6 9.1374 -3.5092 2.7117
20 7 10.1988 -2.8466 2.3033
21 14 8.8693 -5.2740 2.1615
22 1 7.5864 -5.3719 1.4199
23 1 9.9857 -5.6913 1.2756
24 1 8.8223 -6.1617 3.3511
25 6 9.4356 -0.5668 3.7266
26 8 7.6334 0.9592 2.8723
27 6 3.8829 2.5361 -0.9519
28 6 2.7959 3.2999 -1.7109
29 6 3.6565 2.2667 -2.4409
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8934 -0.5139 0.8900
35 1 5.8432 1.7083 1.0484
36 1 5.2074 1.5566 3.7958
37 1 5.2305 3.2715 3.3196
38 1 7.9026 3.6975 4.6215
39 1 6.8013 2.4571 5.3040
40 1 8.9229 1.4642 5.8595
41 1 9.7176 2.1320 4.3925
42 1 6.6136 -0.6787 4.6916
43 1 8.0116 -0.6637 5.8507
44 1 10.8417 -3.2745 1.7164
45 1 10.2325 -0.5707 4.4702
46 1 9.8125 -0.5456 2.7041
47 1 4.7814 3.0853 -0.6707
48 1 1.7585 3.0361 -1.5051
49 1 2.9791 4.3519 -1.9291
50 1 4.4059 2.6391 -3.1392
51 1 3.1852 1.3230 -2.7156
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001724872377.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:03:46
Heat of formation + Delta-G solvation = -38.776016 kcal
Electronic energy + Delta-G solvation = -30532.801775 eV
Core-core repulsion = 26435.469541 eV
Total energy + Delta-G solvation = -4097.332234 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.33285 -39.84971 -38.06598 -36.56891 -36.39021 -34.32019 -32.16588 -31.91406
-31.50505 -29.78215 -28.01721 -26.58872 -24.76162 -23.93078 -23.11619 -22.38383
-21.74749 -21.36985 -21.33208 -20.10897 -18.98080 -17.78797 -16.97989 -16.68698
-16.47341 -16.13121 -15.56887 -15.20903 -15.10826 -14.94963 -14.70803 -14.31061
-14.10042 -13.71048 -13.57721 -13.07068 -12.97006 -12.87239 -12.72034 -12.68737
-12.29508 -12.11395 -11.77099 -11.67339 -11.52909 -11.47900 -11.41384 -11.26862
-11.11974 -11.00786 -10.81172 -10.75425 -10.46241 -10.41110 -10.25887 -10.07505
-9.70009 -9.50588 -9.23486 -8.98430 -8.85551 -8.70677 -6.86695 -5.74461
-3.05873 2.63509 2.93153 3.40511 3.44263 3.45620 3.54999 3.71581
4.05432 4.43408 4.46362 4.62032 4.67597 4.70180 4.77104 4.88741
4.97390 5.00941 5.01905 5.08910 5.16312 5.22228 5.28169 5.31992
5.38756 5.48448 5.49451 5.53024 5.58089 5.67637 5.68146 5.72393
5.78047 5.85761 5.90014 5.96302 6.04196 6.07787 6.13318 6.25293
6.38640 6.47253 6.56437 6.66377 6.91294 6.94866 7.20260 7.51885
7.58288 7.77201 7.99954 8.29358 9.05500 9.72338 10.65021 11.43389
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.009114 B = 0.003343 C = 0.002777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3071.330872 B = 8374.449309 C =10079.372925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.052 3.948
3 O -0.353 6.353
4 C 0.104 3.896
5 H 0.094 0.906
6 C 0.500 3.500
7 O -0.530 6.530
8 N -0.717 5.717
9 C 0.114 3.886
10 C 0.064 3.936
11 H 0.082 0.918
12 C -0.144 4.144
13 C -0.137 4.137
14 C 0.059 3.941
15 C 0.105 3.895
16 N -0.602 5.602
17 C -0.214 4.214
18 H 0.079 0.921
19 C -0.007 4.007
20 N -0.921 5.921
21 Si 0.912 3.088
22 H -0.285 1.285
23 H -0.289 1.289
24 H -0.285 1.285
25 C 0.164 3.836
26 O -0.330 6.330
27 C -0.164 4.164
28 C -0.158 4.158
29 C -0.170 4.170
30 H 0.061 0.939
31 H 0.071 0.929
32 H 0.065 0.935
33 H 0.050 0.950
34 H 0.052 0.948
35 H 0.406 0.594
36 H 0.071 0.929
37 H 0.073 0.927
38 H 0.079 0.921
39 H 0.078 0.922
40 H 0.082 0.918
41 H 0.078 0.922
42 H 0.042 0.958
43 H 0.040 0.960
44 H 0.254 0.746
45 H 0.039 0.961
46 H 0.078 0.922
47 H 0.118 0.882
48 H 0.108 0.892
49 H 0.092 0.908
50 H 0.098 0.902
51 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.855 14.160 -4.808 18.478
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.024 4.024
3 O -0.271 6.271
4 C 0.043 3.957
5 H 0.111 0.889
6 C 0.285 3.715
7 O -0.406 6.406
8 N -0.370 5.370
9 C -0.010 4.010
10 C 0.005 3.995
11 H 0.100 0.900
12 C -0.182 4.182
13 C -0.175 4.175
14 C 0.018 3.982
15 C -0.022 4.022
16 N -0.328 5.328
17 C -0.342 4.342
18 H 0.097 0.903
19 C -0.203 4.203
20 N -0.568 5.568
21 Si 0.742 3.258
22 H -0.211 1.211
23 H -0.215 1.215
24 H -0.212 1.212
25 C 0.038 3.962
26 O -0.249 6.249
27 C -0.182 4.182
28 C -0.195 4.195
29 C -0.207 4.207
30 H 0.080 0.920
31 H 0.089 0.911
32 H 0.084 0.916
33 H 0.068 0.932
34 H 0.070 0.930
35 H 0.241 0.759
36 H 0.089 0.911
37 H 0.091 0.909
38 H 0.097 0.903
39 H 0.097 0.903
40 H 0.101 0.899
41 H 0.097 0.903
42 H 0.060 0.940
43 H 0.058 0.942
44 H 0.063 0.937
45 H 0.056 0.944
46 H 0.096 0.904
47 H 0.136 0.864
48 H 0.126 0.874
49 H 0.111 0.889
50 H 0.116 0.884
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -11.563 14.036 -4.575 18.752
hybrid contribution 0.547 -1.286 -0.232 1.417
sum -11.016 12.750 -4.806 17.522
Atomic orbital electron populations
1.21704 0.93441 1.02257 1.03105 1.22645 0.95951 0.83490 1.00342
1.87974 1.18253 1.26604 1.94224 1.21352 0.83540 0.99377 0.91457
0.88880 1.20991 0.82528 0.77597 0.90417 1.90686 1.52018 1.48371
1.49546 1.45873 1.07086 1.70347 1.13710 1.21792 0.94186 1.00759
0.84217 1.23051 0.92127 0.87033 0.97266 0.90026 1.23063 0.98863
1.00427 0.95887 1.22973 0.97783 0.95388 1.01396 1.23347 0.95772
0.92265 0.86811 1.22760 0.96920 0.88494 0.94033 1.45440 1.23574
1.10550 1.53219 1.18853 1.05803 0.85984 1.23532 0.90315 1.24751
0.96933 0.98405 1.00251 1.69809 1.12667 1.36201 1.38093 0.86204
0.77061 0.84259 0.78258 1.21141 1.21512 1.21203 1.22079 0.90365
0.82386 1.01398 1.88376 1.71114 1.28840 1.36535 1.22357 1.01761
1.01536 0.92575 1.22880 0.97573 0.96859 1.02173 1.22975 1.03329
1.01275 0.93162 0.91994 0.91059 0.91614 0.93174 0.92977 0.75894
0.91060 0.90905 0.90259 0.90342 0.89927 0.90310 0.93998 0.94209
0.93653 0.94378 0.90397 0.86435 0.87405 0.88931 0.88393 0.88714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 10.28 37.16 0.38 -1.00 16
2 C 0.05 0.58 6.39 37.16 0.24 0.82 16
3 O -0.35 -4.61 7.88 -55.09 -0.43 -5.05 16
4 C 0.10 1.29 2.95 -27.88 -0.08 1.20 16
5 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16
6 C 0.50 7.47 7.14 -10.98 -0.08 7.39 16
7 O -0.53 -9.90 16.51 -14.30 -0.24 -10.14 16
8 N -0.72 -9.71 5.35 -60.29 -0.32 -10.03 16
9 C 0.11 1.54 5.23 -4.04 -0.02 1.52 16
10 C 0.06 0.84 3.62 -25.96 -0.09 0.75 16
11 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
12 C -0.14 -1.64 6.56 -24.62 -0.16 -1.80 16
13 C -0.14 -1.87 6.49 -24.94 -0.16 -2.03 16
14 C 0.06 1.10 1.55 -90.81 -0.14 0.96 16
15 C 0.10 2.20 8.24 -7.87 -0.06 2.14 16
16 N -0.60 -15.82 3.79 -184.96 -0.70 -16.52 16
17 C -0.21 -6.16 10.74 -15.06 -0.16 -6.32 16
18 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16
19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16
20 N -0.92 -27.48 11.52 55.49 0.64 -26.84 16
21 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16
22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
25 C 0.16 3.85 6.95 -7.87 -0.05 3.79 16
26 O -0.33 -6.07 10.68 -35.23 -0.38 -6.45 16
27 C -0.16 -1.66 5.71 -90.62 -0.52 -2.18 16
28 C -0.16 -1.49 9.86 -26.73 -0.26 -1.76 16
29 C -0.17 -1.47 10.24 -26.73 -0.27 -1.74 16
30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16
34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.41 5.02 8.40 -40.82 -0.34 4.68 16
36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
39 H 0.08 0.86 7.85 -51.93 -0.41 0.45 16
40 H 0.08 1.04 7.93 -51.93 -0.41 0.63 16
41 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
42 H 0.04 0.89 8.14 -51.92 -0.42 0.47 16
43 H 0.04 0.78 7.98 -51.93 -0.41 0.37 16
44 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16
45 H 0.04 0.88 8.13 -51.93 -0.42 0.46 16
46 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16
47 H 0.12 1.09 7.98 -51.93 -0.41 0.68 16
48 H 0.11 1.13 7.02 -51.92 -0.36 0.77 16
49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
51 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16
LS Contribution 414.32 15.07 6.24 6.24
Total: -1.00 -34.90 414.32 -10.78 -45.68
By element:
Atomic # 1 Polarization: 13.31 SS G_CDS: -9.01 Total: 4.29 kcal
Atomic # 6 Polarization: 3.01 SS G_CDS: -1.55 Total: 1.46 kcal
Atomic # 7 Polarization: -53.01 SS G_CDS: -0.38 Total: -53.39 kcal
Atomic # 8 Polarization: -20.58 SS G_CDS: -1.05 Total: -21.63 kcal
Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal
Total LS contribution 6.24 Total: 6.24 kcal
Total: -34.90 -10.78 -45.68 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724872377.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.902 kcal
(2) G-P(sol) polarization free energy of solvation -34.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.776 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds