Wall clock time and date at job start Tue Mar 31 2020 22:03:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42900 * 109.47321 * 2 1
4 4 C 1.42903 * 113.99978 * 178.35524 * 3 2 1
5 5 H 1.09001 * 109.47297 * 16.61349 * 4 3 2
6 6 C 1.50700 * 109.46874 * 256.61171 * 4 3 2
7 7 O 1.21275 * 120.00350 * 355.00247 * 6 4 3
8 8 N 1.34778 * 119.99616 * 175.00369 * 6 4 3
9 9 C 1.46505 * 120.00067 * 180.02562 * 8 6 4
10 10 C 1.52999 * 109.47111 * 179.97438 * 9 8 6
11 11 H 1.09003 * 109.89825 * 59.48722 * 10 9 8
12 12 C 1.54472 * 109.82762 * 180.42013 * 10 9 8
13 13 C 1.55509 * 102.38541 * 140.87699 * 12 10 9
14 14 C 1.53877 * 100.75756 * 327.02953 * 13 12 10
15 15 C 1.52381 * 115.67729 * 263.23486 * 14 13 12
16 16 N 1.47266 * 87.70588 * 218.74960 * 15 14 13
17 17 C 1.36942 * 135.93659 * 206.16066 * 16 15 14
18 18 H 1.08002 * 119.99752 * 359.97438 * 17 16 15
19 19 C 1.38810 * 120.00338 * 179.97438 * 17 16 15
20 20 N 1.31623 * 119.99793 * 359.97438 * 19 17 16
21 21 Si 1.86791 * 120.00308 * 179.97438 * 19 17 16
22 22 H 1.48507 * 109.47194 * 59.99881 * 21 19 17
23 23 H 1.48500 * 109.47337 * 179.97438 * 21 19 17
24 24 H 1.48505 * 109.47357 * 300.00333 * 21 19 17
25 25 C 1.47277 * 88.13268 * 26.17601 * 16 15 14
26 26 O 1.42401 * 106.67104 * 34.97613 * 14 13 12
27 27 C 1.53004 * 109.46895 * 136.61523 * 4 3 2
28 28 C 1.52998 * 117.49958 * 2.66586 * 27 4 3
29 29 C 1.52996 * 60.00088 * 252.51148 * 28 27 4
30 30 H 1.08993 * 109.46882 * 59.99954 * 1 2 3
31 31 H 1.08997 * 109.46998 * 179.97438 * 1 2 3
32 32 H 1.09001 * 109.47030 * 299.99834 * 1 2 3
33 33 H 1.09008 * 109.47197 * 239.99776 * 2 1 3
34 34 H 1.09002 * 109.47454 * 120.00157 * 2 1 3
35 35 H 0.96998 * 120.00403 * 359.97438 * 8 6 4
36 36 H 1.09005 * 109.46912 * 59.99488 * 9 8 6
37 37 H 1.08997 * 109.46671 * 300.00040 * 9 8 6
38 38 H 1.09002 * 110.82675 * 259.09715 * 12 10 9
39 39 H 1.09000 * 110.82555 * 22.45922 * 12 10 9
40 40 H 1.08994 * 111.16097 * 209.15150 * 13 12 10
41 41 H 1.09002 * 111.15846 * 84.90330 * 13 12 10
42 42 H 1.09008 * 113.50966 * 104.03865 * 15 14 13
43 43 H 1.09000 * 113.51284 * 333.46112 * 15 14 13
44 44 H 0.96998 * 120.00194 * 180.02562 * 20 19 17
45 45 H 1.08999 * 113.50954 * 88.53060 * 25 16 15
46 46 H 1.09001 * 113.51279 * 219.05107 * 25 16 15
47 47 H 1.08999 * 115.54780 * 148.37637 * 27 4 3
48 48 H 1.09009 * 117.49641 * 0.02562 * 28 27 4
49 49 H 1.08998 * 117.50034 * 145.02107 * 28 27 4
50 50 H 1.08994 * 117.49948 * 252.51206 * 29 28 27
51 51 H 1.09002 * 117.49655 * 107.48734 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4304 1.4602 0.0375
5 1 3.8781 0.5045 -0.2352
6 6 3.8677 1.8411 1.4285
7 8 3.0386 2.0886 2.2783
8 7 5.1801 1.9066 1.7280
9 6 5.6052 2.2764 3.0804
10 6 7.1335 2.2753 3.1527
11 1 7.5395 2.9863 2.4332
12 6 7.5908 2.6539 4.5788
13 6 8.8025 1.7054 4.8034
14 6 8.3548 0.4722 3.9993
15 6 7.6968 -0.6396 4.8074
16 7 8.4140 -1.6028 3.9549
17 6 8.2172 -2.8965 3.5511
18 1 7.3460 -3.4400 3.8858
19 6 9.1374 -3.5092 2.7117
20 7 10.1988 -2.8466 2.3033
21 14 8.8693 -5.2740 2.1615
22 1 7.5864 -5.3719 1.4199
23 1 9.9857 -5.6913 1.2756
24 1 8.8223 -6.1617 3.3511
25 6 9.4356 -0.5668 3.7266
26 8 7.6334 0.9592 2.8723
27 6 3.8829 2.5361 -0.9519
28 6 2.7959 3.2999 -1.7109
29 6 3.6565 2.2667 -2.4409
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8934 -0.5139 0.8900
35 1 5.8432 1.7083 1.0484
36 1 5.2074 1.5566 3.7958
37 1 5.2305 3.2715 3.3196
38 1 7.9026 3.6975 4.6215
39 1 6.8013 2.4571 5.3040
40 1 8.9229 1.4642 5.8595
41 1 9.7176 2.1320 4.3925
42 1 6.6136 -0.6787 4.6916
43 1 8.0116 -0.6637 5.8507
44 1 10.8417 -3.2745 1.7164
45 1 10.2325 -0.5707 4.4702
46 1 9.8125 -0.5456 2.7041
47 1 4.7814 3.0853 -0.6707
48 1 1.7585 3.0361 -1.5051
49 1 2.9791 4.3519 -1.9291
50 1 4.4059 2.6391 -3.1392
51 1 3.1852 1.3230 -2.7156
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724872377.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:03:45
Heat of formation + Delta-G solvation = -61.812506 kcal
Electronic energy + Delta-G solvation = -30533.800712 eV
Core-core repulsion = 26435.469541 eV
Total energy + Delta-G solvation = -4098.331172 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.58342 -41.08882 -39.13033 -38.07379 -37.24315 -35.60231 -34.15705 -33.12559
-32.38013 -31.07378 -29.42554 -28.06426 -26.54006 -25.33406 -23.95713 -23.29273
-23.07413 -22.54844 -22.32907 -21.13805 -20.49318 -18.82937 -18.71612 -18.01395
-17.63475 -17.07665 -16.92747 -16.65426 -16.27005 -16.14988 -15.97795 -15.57044
-15.54026 -15.12870 -14.79688 -14.64685 -14.23414 -14.08886 -13.85799 -13.65943
-13.42846 -13.16678 -13.12304 -13.01038 -12.80751 -12.69126 -12.55325 -12.41181
-12.38475 -12.33869 -12.21583 -12.16112 -11.65262 -11.63669 -11.33547 -11.27097
-11.24738 -11.08378 -10.94385 -10.31155 -10.24336 -10.13920 -8.93347 -7.91490
-5.24106 1.42405 1.46150 1.48724 1.52459 1.90985 2.45487 2.60640
2.80682 2.93617 3.30284 3.43446 3.52321 3.56328 3.74142 3.75790
3.85335 3.86904 3.95413 4.07460 4.14064 4.20165 4.21759 4.25692
4.39386 4.43146 4.47438 4.55633 4.59091 4.70986 4.77048 4.81657
4.83657 4.90457 4.95785 4.96866 4.99574 5.00160 5.12104 5.19614
5.20083 5.20676 5.28371 5.32214 5.34805 5.37991 5.50522 5.91703
5.98016 6.37252 6.48163 6.89635 7.14998 7.58165 8.59197 9.25944
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.009114 B = 0.003343 C = 0.002777
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3071.330872 B = 8374.449309 C =10079.372925
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.045 3.955
3 O -0.367 6.367
4 C 0.105 3.895
5 H 0.099 0.901
6 C 0.496 3.504
7 O -0.574 6.574
8 N -0.711 5.711
9 C 0.116 3.884
10 C 0.062 3.938
11 H 0.107 0.893
12 C -0.133 4.133
13 C -0.128 4.128
14 C 0.080 3.920
15 C 0.103 3.897
16 N -0.638 5.638
17 C -0.233 4.233
18 H 0.077 0.923
19 C -0.063 4.063
20 N -0.950 5.950
21 Si 0.978 3.022
22 H -0.279 1.279
23 H -0.289 1.289
24 H -0.277 1.277
25 C 0.159 3.841
26 O -0.362 6.362
27 C -0.175 4.175
28 C -0.160 4.160
29 C -0.156 4.156
30 H 0.071 0.929
31 H 0.089 0.911
32 H 0.051 0.949
33 H 0.068 0.932
34 H 0.033 0.967
35 H 0.412 0.588
36 H 0.046 0.954
37 H 0.091 0.909
38 H 0.117 0.883
39 H 0.084 0.916
40 H 0.098 0.902
41 H 0.092 0.908
42 H 0.033 0.967
43 H 0.061 0.939
44 H 0.249 0.751
45 H 0.039 0.961
46 H 0.038 0.962
47 H 0.127 0.873
48 H 0.094 0.906
49 H 0.106 0.894
50 H 0.115 0.885
51 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.041 15.600 -5.161 19.797
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.031 4.031
3 O -0.285 6.285
4 C 0.044 3.956
5 H 0.117 0.883
6 C 0.282 3.718
7 O -0.453 6.453
8 N -0.364 5.364
9 C -0.008 4.008
10 C 0.004 3.996
11 H 0.125 0.875
12 C -0.171 4.171
13 C -0.166 4.166
14 C 0.039 3.961
15 C -0.022 4.022
16 N -0.364 5.364
17 C -0.361 4.361
18 H 0.095 0.905
19 C -0.256 4.256
20 N -0.599 5.599
21 Si 0.806 3.194
22 H -0.205 1.205
23 H -0.215 1.215
24 H -0.203 1.203
25 C 0.034 3.966
26 O -0.281 6.281
27 C -0.194 4.194
28 C -0.197 4.197
29 C -0.192 4.192
30 H 0.090 0.910
31 H 0.108 0.892
32 H 0.070 0.930
33 H 0.087 0.913
34 H 0.051 0.949
35 H 0.248 0.752
36 H 0.064 0.936
37 H 0.109 0.891
38 H 0.135 0.865
39 H 0.102 0.898
40 H 0.117 0.883
41 H 0.110 0.890
42 H 0.052 0.948
43 H 0.079 0.921
44 H 0.058 0.942
45 H 0.056 0.944
46 H 0.056 0.944
47 H 0.145 0.855
48 H 0.113 0.887
49 H 0.125 0.875
50 H 0.134 0.866
51 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -11.749 15.500 -4.916 20.061
hybrid contribution 0.569 -1.716 -0.104 1.811
sum -11.180 13.784 -5.019 18.444
Atomic orbital electron populations
1.21708 0.92068 1.03423 1.02861 1.22813 0.97181 0.82851 1.00263
1.87968 1.18696 1.27652 1.94149 1.21426 0.83379 1.00409 0.90401
0.88329 1.21543 0.82452 0.76693 0.91117 1.90655 1.53105 1.50594
1.50990 1.45904 1.06929 1.69523 1.13995 1.21805 0.94522 1.00875
0.83555 1.23325 0.91538 0.85142 0.99561 0.87518 1.23092 0.97759
1.01938 0.94289 1.22957 0.99234 0.93078 1.01379 1.22943 0.92936
0.93306 0.86896 1.22957 0.96201 0.88297 0.94767 1.45827 1.25339
1.10553 1.54635 1.19218 1.05802 0.87536 1.23573 0.90540 1.25585
0.96869 1.02491 1.00640 1.70002 1.13428 1.37646 1.38783 0.85168
0.76933 0.79445 0.77874 1.20467 1.21509 1.20287 1.22065 0.91376
0.84161 0.99035 1.88340 1.71298 1.31563 1.36882 1.22373 1.02391
1.01537 0.93060 1.22907 0.96742 0.97866 1.02204 1.23054 1.03030
1.01010 0.92137 0.91004 0.89201 0.93018 0.91344 0.94885 0.75165
0.93599 0.89117 0.86463 0.89775 0.88340 0.88959 0.94841 0.92120
0.94193 0.94374 0.94361 0.85549 0.88746 0.87539 0.86632 0.88652
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.61 10.28 71.98 0.74 -1.87 16
2 C 0.05 1.01 6.39 71.98 0.46 1.47 16
3 O -0.37 -9.64 7.88 -129.99 -1.02 -10.67 16
4 C 0.11 2.58 2.95 29.85 0.09 2.67 16
5 H 0.10 2.24 7.68 -2.39 -0.02 2.23 16
6 C 0.50 14.93 7.14 87.66 0.63 15.56 16
7 O -0.57 -21.92 16.51 15.98 0.26 -21.66 16
8 N -0.71 -18.93 5.35 -463.05 -2.48 -21.40 16
9 C 0.12 3.00 5.23 86.38 0.45 3.45 16
10 C 0.06 1.49 3.62 31.09 0.11 1.60 16
11 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16
12 C -0.13 -2.52 6.56 31.96 0.21 -2.31 16
13 C -0.13 -3.11 6.49 31.75 0.21 -2.91 16
14 C 0.08 2.94 1.55 -10.91 -0.02 2.92 16
15 C 0.10 4.34 8.24 83.48 0.69 5.03 16
16 N -0.64 -34.26 3.79 -740.49 -2.81 -37.07 16
17 C -0.23 -13.73 10.74 84.03 0.90 -12.83 16
18 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16
19 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16
20 N -0.95 -58.35 11.52 21.65 0.25 -58.10 16
21 Si 0.98 46.73 29.55 68.60 2.03 48.76 16
22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16
24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
25 C 0.16 7.66 6.95 83.48 0.58 8.24 16
26 O -0.36 -13.07 10.68 -148.98 -1.59 -14.66 16
27 C -0.18 -3.34 5.71 -10.79 -0.06 -3.40 16
28 C -0.16 -2.81 9.86 30.59 0.30 -2.51 16
29 C -0.16 -2.37 10.24 30.59 0.31 -2.06 16
30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16
32 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16
33 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16
34 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16
35 H 0.41 9.92 8.40 -92.71 -0.78 9.15 16
36 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16
37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16
39 H 0.08 1.54 7.85 -2.39 -0.02 1.53 16
40 H 0.10 2.12 7.93 -2.39 -0.02 2.11 16
41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16
42 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16
43 H 0.06 2.30 7.98 -2.39 -0.02 2.28 16
44 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16
45 H 0.04 1.80 8.13 -2.39 -0.02 1.78 16
46 H 0.04 2.11 7.16 -2.39 -0.02 2.10 16
47 H 0.13 2.14 7.98 -2.39 -0.02 2.13 16
48 H 0.09 1.93 7.02 -2.38 -0.02 1.91 16
49 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16
50 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
51 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
Total: -1.00 -79.19 414.32 0.84 -78.35
By element:
Atomic # 1 Polarization: 26.45 SS G_CDS: 0.13 Total: 26.58 kcal
Atomic # 6 Polarization: 3.79 SS G_CDS: 6.07 Total: 9.86 kcal
Atomic # 7 Polarization: -111.54 SS G_CDS: -5.03 Total: -116.57 kcal
Atomic # 8 Polarization: -44.63 SS G_CDS: -2.35 Total: -46.98 kcal
Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal
Total: -79.19 0.84 -78.35 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724872377.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.540 kcal
(2) G-P(sol) polarization free energy of solvation -79.193 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.813 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds