Wall clock time and date at job start Tue Mar 31 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47148 * 2 1 4 4 C 1.42902 * 114.00159 * 183.51734 * 3 2 1 5 5 H 1.08998 * 109.46856 * 20.81946 * 4 3 2 6 6 C 1.50704 * 109.47238 * 140.82235 * 4 3 2 7 7 O 1.21281 * 119.99743 * 4.99966 * 6 4 3 8 8 N 1.34774 * 119.99808 * 185.00082 * 6 4 3 9 9 C 1.47084 * 125.63377 * 0.02562 * 8 6 4 10 10 C 1.54457 * 107.30083 * 180.99780 * 9 8 6 11 11 C 1.54357 * 102.87410 * 21.49402 * 10 9 8 12 12 C 1.47575 * 125.62807 * 180.02562 * 8 6 4 13 13 C 1.52363 * 110.42866 * 207.62946 * 11 10 9 14 14 N 1.47343 * 108.40074 * 186.35415 * 13 11 10 15 15 C 1.36938 * 121.07957 * 229.20926 * 14 13 11 16 16 H 1.08005 * 119.99467 * 153.01616 * 15 14 13 17 17 C 1.38817 * 120.00182 * 333.01040 * 15 14 13 18 18 N 1.31616 * 119.99650 * 160.13066 * 17 15 14 19 19 Si 1.86793 * 120.00161 * 340.13270 * 17 15 14 20 20 H 1.48502 * 109.47278 * 89.18073 * 19 17 15 21 21 H 1.48494 * 109.47445 * 209.18275 * 19 17 15 22 22 H 1.48507 * 109.46988 * 329.18269 * 19 17 15 23 23 C 1.47170 * 117.83441 * 49.18782 * 14 13 11 24 24 C 1.53276 * 108.57730 * 308.76998 * 23 14 13 25 25 O 1.41883 * 110.76105 * 83.66770 * 11 10 9 26 26 C 1.53003 * 109.46934 * 260.82018 * 4 3 2 27 27 C 1.53004 * 117.49792 * 8.28617 * 26 4 3 28 28 C 1.52998 * 117.49831 * 299.66375 * 26 4 3 29 29 H 1.09002 * 109.47180 * 300.00159 * 1 2 3 30 30 H 1.09002 * 109.47065 * 60.00619 * 1 2 3 31 31 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47180 * 239.99841 * 2 1 3 33 33 H 1.09002 * 109.47065 * 119.99381 * 2 1 3 34 34 H 1.08997 * 109.87594 * 61.56773 * 9 8 6 35 35 H 1.09000 * 109.87532 * 300.42981 * 9 8 6 36 36 H 1.09003 * 110.73614 * 139.83660 * 10 9 8 37 37 H 1.08995 * 110.73735 * 262.97521 * 10 9 8 38 38 H 1.08998 * 110.37593 * 37.85285 * 12 8 6 39 39 H 1.09003 * 110.46395 * 275.55558 * 12 8 6 40 40 H 1.09002 * 109.68170 * 306.07769 * 13 11 10 41 41 H 1.08995 * 109.67864 * 66.59372 * 13 11 10 42 42 H 0.96998 * 119.99630 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.61877 * 68.49315 * 23 14 13 44 44 H 1.08993 * 109.61809 * 188.86038 * 23 14 13 45 45 H 1.08995 * 109.51151 * 172.91698 * 24 23 14 46 46 H 1.09004 * 109.50985 * 293.06911 * 24 23 14 47 47 H 1.08996 * 115.55229 * 153.99417 * 26 4 3 48 48 H 1.08994 * 117.49776 * 359.97438 * 27 26 4 49 49 H 1.09000 * 117.49853 * 145.02107 * 27 26 4 50 50 H 1.08996 * 117.50019 * 214.97941 * 28 26 4 51 51 H 1.09000 * 117.49924 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4285 1.4609 -0.0801 5 1 3.8441 0.5400 -0.4890 6 6 3.7904 2.6170 -0.9767 7 8 2.9198 3.3338 -1.4230 8 7 5.0814 2.8542 -1.2824 9 6 6.2318 2.0673 -0.8126 10 6 7.5042 2.7215 -1.3945 11 6 7.0381 4.1586 -1.7109 12 6 5.5741 3.9464 -2.1439 13 6 7.8545 4.7422 -2.8573 14 7 7.4813 6.1582 -3.0204 15 6 7.1625 6.6681 -4.2506 16 1 6.4998 7.5175 -4.3279 17 6 7.6911 6.0935 -5.3984 18 7 7.1137 6.2991 -6.5631 19 14 9.2219 5.0285 -5.2898 20 1 8.8272 3.6181 -5.0439 21 1 9.9772 5.1159 -6.5653 22 1 10.0781 5.5047 -4.1738 23 6 7.4619 7.0066 -1.8179 24 6 6.6222 6.3093 -0.7419 25 8 7.1094 4.9767 -0.5539 26 6 4.0004 1.7018 1.3185 27 6 3.0411 1.5813 2.5043 28 6 3.5422 2.9577 2.0624 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5137 0.8901 34 1 6.1478 1.0401 -1.1673 35 1 6.2717 2.0832 0.2766 36 1 8.3061 2.7298 -0.6561 37 1 7.8221 2.2076 -2.3016 38 1 4.9934 4.8534 -1.9762 39 1 5.5270 3.6549 -3.1932 40 1 8.9172 4.6670 -2.6267 41 1 7.6388 4.1971 -3.7762 42 1 7.4829 5.8973 -7.3651 43 1 8.4793 7.1482 -1.4535 44 1 7.0218 7.9740 -2.0597 45 1 6.7000 6.8610 0.1949 46 1 5.5799 6.2744 -1.0592 47 1 5.0296 1.3755 1.4681 48 1 2.0026 1.3309 2.2881 49 1 3.4392 1.1755 3.4344 50 1 4.2698 3.4575 2.7018 51 1 2.8330 3.6122 1.5557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734136697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:57 Heat of formation + Delta-G solvation = -52.056800 kcal Electronic energy + Delta-G solvation = -32000.617576 eV Core-core repulsion = 27902.709443 eV Total energy + Delta-G solvation = -4097.908132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63749 -39.52393 -37.88106 -36.38405 -36.06499 -34.67874 -32.08692 -31.61074 -31.52660 -29.36341 -28.82782 -27.47333 -25.46270 -23.77885 -23.39227 -23.12867 -22.41568 -21.24432 -20.98309 -19.61065 -19.01598 -17.37967 -17.12456 -16.96684 -16.62366 -16.30868 -15.43038 -15.27845 -15.20896 -14.98194 -14.65066 -14.22492 -14.09789 -13.97336 -13.71652 -13.44791 -13.11961 -12.75444 -12.70213 -12.53481 -12.41804 -12.26707 -11.98015 -11.83635 -11.71250 -11.54862 -11.46942 -11.40572 -11.30551 -11.13198 -10.91604 -10.69520 -10.50672 -10.43895 -10.30125 -9.97828 -9.73694 -9.57957 -9.45017 -9.28281 -8.62222 -8.41179 -7.05451 -6.01103 -3.39217 2.67111 2.80425 3.21286 3.41553 3.43658 3.49975 3.76182 3.99195 4.38939 4.43258 4.49707 4.62279 4.65414 4.71182 4.81170 4.91600 4.92856 5.01993 5.04888 5.11501 5.13816 5.18094 5.27109 5.36247 5.43645 5.51612 5.53682 5.58382 5.66807 5.72049 5.74170 5.82512 5.86040 5.88950 5.94948 6.00178 6.04904 6.07362 6.09630 6.20703 6.31333 6.38413 6.41948 6.46545 6.67957 6.91861 7.61104 7.68974 7.81617 8.25155 8.32196 8.81383 9.62048 9.98205 11.14570 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.003440 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.468728 B = 8137.733219 C = 8631.761727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.352 6.352 4 C 0.110 3.890 5 H 0.087 0.913 6 C 0.530 3.470 7 O -0.521 6.521 8 N -0.609 5.609 9 C 0.102 3.898 10 C -0.121 4.121 11 C 0.096 3.904 12 C 0.097 3.903 13 C 0.111 3.889 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.089 0.911 17 C 0.025 3.975 18 N -0.904 5.904 19 Si 0.880 3.120 20 H -0.287 1.287 21 H -0.301 1.301 22 H -0.271 1.271 23 C 0.113 3.887 24 C 0.043 3.957 25 O -0.368 6.368 26 C -0.183 4.183 27 C -0.164 4.164 28 C -0.161 4.161 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.085 0.915 42 H 0.264 0.736 43 H 0.032 0.968 44 H 0.073 0.927 45 H 0.088 0.912 46 H 0.053 0.947 47 H 0.118 0.882 48 H 0.102 0.898 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -14.527 17.781 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.048 3.952 5 H 0.105 0.895 6 C 0.317 3.683 7 O -0.395 6.395 8 N -0.345 5.345 9 C -0.021 4.021 10 C -0.159 4.159 11 C 0.053 3.947 12 C -0.025 4.025 13 C -0.015 4.015 14 N -0.332 5.332 15 C -0.388 4.388 16 H 0.106 0.894 17 C -0.174 4.174 18 N -0.547 5.547 19 Si 0.710 3.290 20 H -0.214 1.214 21 H -0.229 1.229 22 H -0.196 1.196 23 C -0.013 4.013 24 C -0.035 4.035 25 O -0.287 6.287 26 C -0.201 4.201 27 C -0.201 4.201 28 C -0.198 4.198 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.106 0.894 46 H 0.071 0.929 47 H 0.135 0.865 48 H 0.121 0.879 49 H 0.111 0.889 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.165 -14.047 17.529 23.049 hybrid contribution 1.133 -0.755 -0.393 1.417 sum -4.032 -14.802 17.136 23.000 Atomic orbital electron populations 1.21727 0.93444 1.02133 1.03461 1.22632 0.95922 0.83632 1.00124 1.88029 1.18533 1.26274 1.94198 1.21267 0.83218 0.97276 0.93448 0.89514 1.19935 0.81198 0.86065 0.81134 1.90735 1.47155 1.48521 1.53129 1.48432 1.04960 1.31448 1.49671 1.22146 0.85683 0.94732 0.99577 1.22593 0.97090 0.93695 1.02510 1.22351 0.93987 0.90332 0.88001 1.22703 0.94842 0.90594 0.94340 1.21800 0.96265 0.86988 0.96487 1.44418 1.81022 1.03211 1.04526 1.18907 1.23202 1.15980 0.80723 0.89364 1.25272 0.98314 0.98835 0.95024 1.69823 1.39645 1.46531 0.98677 0.87036 0.85640 0.79829 0.76506 1.21434 1.22898 1.19600 1.21626 0.97572 0.94710 0.87358 1.23143 0.97950 0.82866 0.99516 1.87640 1.84746 1.23028 1.33250 1.22692 0.99760 1.05894 0.91788 1.22930 0.99820 1.00718 0.96654 1.22890 1.03414 0.90763 1.02762 0.91802 0.91574 0.91092 0.93307 0.93044 0.91651 0.90859 0.88905 0.89113 0.89423 0.90141 0.94409 0.89747 0.92627 0.95036 0.90853 0.89376 0.92926 0.86468 0.87929 0.88907 0.88661 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.15 0.38 -0.86 16 2 C 0.05 0.50 5.96 37.15 0.22 0.72 16 3 O -0.35 -4.65 8.07 -55.09 -0.44 -5.10 16 4 C 0.11 1.36 2.45 -27.88 -0.07 1.29 16 5 H 0.09 0.87 7.64 -51.93 -0.40 0.47 16 6 C 0.53 8.82 6.88 -10.98 -0.08 8.75 16 7 O -0.52 -11.08 16.78 -14.30 -0.24 -11.32 16 8 N -0.61 -9.57 3.33 -170.75 -0.57 -10.14 16 9 C 0.10 1.20 6.16 -2.96 -0.02 1.18 16 10 C -0.12 -1.60 6.12 -25.26 -0.15 -1.75 16 11 C 0.10 1.67 0.83 -89.64 -0.07 1.60 16 12 C 0.10 1.81 5.85 -2.86 -0.02 1.79 16 13 C 0.11 2.32 3.05 -3.91 -0.01 2.31 16 14 N -0.61 -14.11 2.76 -172.24 -0.47 -14.59 16 15 C -0.26 -7.13 10.10 -15.06 -0.15 -7.28 16 16 H 0.09 2.60 8.06 -52.48 -0.42 2.17 16 17 C 0.02 0.70 5.25 -17.43 -0.09 0.61 16 18 N -0.90 -27.36 13.97 55.49 0.78 -26.58 16 19 Si 0.88 21.65 24.27 -169.99 -4.13 17.52 16 20 H -0.29 -6.61 6.49 56.52 0.37 -6.24 16 21 H -0.30 -7.59 7.11 56.52 0.40 -7.18 16 22 H -0.27 -6.59 6.72 56.52 0.38 -6.21 16 23 C 0.11 2.20 6.71 -3.53 -0.02 2.18 16 24 C 0.04 0.73 6.78 37.30 0.25 0.98 16 25 O -0.37 -6.43 10.28 -35.22 -0.36 -6.79 16 26 C -0.18 -1.89 4.92 -90.62 -0.45 -2.34 16 27 C -0.16 -1.53 9.75 -26.73 -0.26 -1.79 16 28 C -0.16 -1.84 9.80 -26.73 -0.26 -2.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.43 8.04 -51.93 -0.42 0.01 16 33 H 0.05 0.39 7.89 -51.93 -0.41 -0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.76 5.99 -51.93 -0.31 0.45 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.13 8.00 -51.93 -0.42 0.72 16 38 H 0.09 1.85 6.00 -51.93 -0.31 1.54 16 39 H 0.08 1.63 7.82 -51.93 -0.41 1.23 16 40 H 0.04 0.80 6.86 -51.93 -0.36 0.44 16 41 H 0.08 1.91 4.51 -51.93 -0.23 1.68 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.39 7.96 -51.93 -0.41 0.98 16 45 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.05 0.97 6.25 -51.93 -0.32 0.64 16 47 H 0.12 1.01 6.51 -51.93 -0.34 0.68 16 48 H 0.10 1.01 6.51 -51.93 -0.34 0.67 16 49 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 51 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -33.75 388.43 -8.90 -42.65 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.52 Total: 3.20 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.80 Total: 5.30 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.27 Total: -51.31 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -1.05 Total: -23.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.13 Total: 17.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.75 -8.90 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734136697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.407 kcal (2) G-P(sol) polarization free energy of solvation -33.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds