Wall clock time and date at job start Tue Mar 31 2020 22:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47148 * 2 1 4 4 C 1.42902 * 114.00159 * 183.51734 * 3 2 1 5 5 H 1.08998 * 109.46856 * 20.81946 * 4 3 2 6 6 C 1.50704 * 109.47238 * 140.82235 * 4 3 2 7 7 O 1.21281 * 119.99743 * 4.99966 * 6 4 3 8 8 N 1.34774 * 119.99808 * 185.00082 * 6 4 3 9 9 C 1.47084 * 125.63377 * 0.02562 * 8 6 4 10 10 C 1.54457 * 107.30083 * 180.99780 * 9 8 6 11 11 C 1.54357 * 102.87410 * 21.49402 * 10 9 8 12 12 C 1.47575 * 125.62807 * 180.02562 * 8 6 4 13 13 C 1.52363 * 110.42866 * 207.62946 * 11 10 9 14 14 N 1.47343 * 108.40074 * 186.35415 * 13 11 10 15 15 C 1.36938 * 121.07957 * 229.20926 * 14 13 11 16 16 H 1.08005 * 119.99467 * 153.01616 * 15 14 13 17 17 C 1.38817 * 120.00182 * 333.01040 * 15 14 13 18 18 N 1.31616 * 119.99650 * 160.13066 * 17 15 14 19 19 Si 1.86793 * 120.00161 * 340.13270 * 17 15 14 20 20 H 1.48502 * 109.47278 * 89.18073 * 19 17 15 21 21 H 1.48494 * 109.47445 * 209.18275 * 19 17 15 22 22 H 1.48507 * 109.46988 * 329.18269 * 19 17 15 23 23 C 1.47170 * 117.83441 * 49.18782 * 14 13 11 24 24 C 1.53276 * 108.57730 * 308.76998 * 23 14 13 25 25 O 1.41883 * 110.76105 * 83.66770 * 11 10 9 26 26 C 1.53003 * 109.46934 * 260.82018 * 4 3 2 27 27 C 1.53004 * 117.49792 * 8.28617 * 26 4 3 28 28 C 1.52998 * 117.49831 * 299.66375 * 26 4 3 29 29 H 1.09002 * 109.47180 * 300.00159 * 1 2 3 30 30 H 1.09002 * 109.47065 * 60.00619 * 1 2 3 31 31 H 1.09000 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47180 * 239.99841 * 2 1 3 33 33 H 1.09002 * 109.47065 * 119.99381 * 2 1 3 34 34 H 1.08997 * 109.87594 * 61.56773 * 9 8 6 35 35 H 1.09000 * 109.87532 * 300.42981 * 9 8 6 36 36 H 1.09003 * 110.73614 * 139.83660 * 10 9 8 37 37 H 1.08995 * 110.73735 * 262.97521 * 10 9 8 38 38 H 1.08998 * 110.37593 * 37.85285 * 12 8 6 39 39 H 1.09003 * 110.46395 * 275.55558 * 12 8 6 40 40 H 1.09002 * 109.68170 * 306.07769 * 13 11 10 41 41 H 1.08995 * 109.67864 * 66.59372 * 13 11 10 42 42 H 0.96998 * 119.99630 * 180.02562 * 18 17 15 43 43 H 1.08994 * 109.61877 * 68.49315 * 23 14 13 44 44 H 1.08993 * 109.61809 * 188.86038 * 23 14 13 45 45 H 1.08995 * 109.51151 * 172.91698 * 24 23 14 46 46 H 1.09004 * 109.50985 * 293.06911 * 24 23 14 47 47 H 1.08996 * 115.55229 * 153.99417 * 26 4 3 48 48 H 1.08994 * 117.49776 * 359.97438 * 27 26 4 49 49 H 1.09000 * 117.49853 * 145.02107 * 27 26 4 50 50 H 1.08996 * 117.50019 * 214.97941 * 28 26 4 51 51 H 1.09000 * 117.49924 * 0.02562 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4285 1.4609 -0.0801 5 1 3.8441 0.5400 -0.4890 6 6 3.7904 2.6170 -0.9767 7 8 2.9198 3.3338 -1.4230 8 7 5.0814 2.8542 -1.2824 9 6 6.2318 2.0673 -0.8126 10 6 7.5042 2.7215 -1.3945 11 6 7.0381 4.1586 -1.7109 12 6 5.5741 3.9464 -2.1439 13 6 7.8545 4.7422 -2.8573 14 7 7.4813 6.1582 -3.0204 15 6 7.1625 6.6681 -4.2506 16 1 6.4998 7.5175 -4.3279 17 6 7.6911 6.0935 -5.3984 18 7 7.1137 6.2991 -6.5631 19 14 9.2219 5.0285 -5.2898 20 1 8.8272 3.6181 -5.0439 21 1 9.9772 5.1159 -6.5653 22 1 10.0781 5.5047 -4.1738 23 6 7.4619 7.0066 -1.8179 24 6 6.6222 6.3093 -0.7419 25 8 7.1094 4.9767 -0.5539 26 6 4.0004 1.7018 1.3185 27 6 3.0411 1.5813 2.5043 28 6 3.5422 2.9577 2.0624 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5137 0.8901 34 1 6.1478 1.0401 -1.1673 35 1 6.2717 2.0832 0.2766 36 1 8.3061 2.7298 -0.6561 37 1 7.8221 2.2076 -2.3016 38 1 4.9934 4.8534 -1.9762 39 1 5.5270 3.6549 -3.1932 40 1 8.9172 4.6670 -2.6267 41 1 7.6388 4.1971 -3.7762 42 1 7.4829 5.8973 -7.3651 43 1 8.4793 7.1482 -1.4535 44 1 7.0218 7.9740 -2.0597 45 1 6.7000 6.8610 0.1949 46 1 5.5799 6.2744 -1.0592 47 1 5.0296 1.3755 1.4681 48 1 2.0026 1.3309 2.2881 49 1 3.4392 1.1755 3.4344 50 1 4.2698 3.4575 2.7018 51 1 2.8330 3.6122 1.5557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734136697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:56 Heat of formation + Delta-G solvation = -75.452580 kcal Electronic energy + Delta-G solvation = -32001.632093 eV Core-core repulsion = 27902.709443 eV Total energy + Delta-G solvation = -4098.922650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.89381 -40.73017 -39.05096 -37.64954 -37.00911 -36.40280 -33.68122 -33.42163 -32.30531 -30.59280 -30.12178 -28.94346 -27.00173 -25.43174 -24.66942 -23.90116 -23.18906 -22.65494 -22.00629 -20.94768 -20.36451 -19.10184 -18.28129 -18.15284 -17.82100 -17.56113 -16.85870 -16.60531 -16.34249 -16.21357 -15.87018 -15.81322 -15.51789 -15.32340 -15.00081 -14.69657 -14.50028 -14.20506 -13.85820 -13.69784 -13.52369 -13.48813 -13.31251 -13.21634 -13.10915 -12.79520 -12.48056 -12.41358 -12.30432 -12.29523 -12.21599 -12.14558 -12.09125 -11.64926 -11.61242 -11.31005 -11.25586 -11.09585 -10.82524 -10.56095 -10.40621 -9.70356 -8.97813 -8.20352 -5.55756 1.25011 1.39727 1.46600 1.49180 1.65139 2.37631 2.61921 2.68435 2.83630 2.95691 3.19542 3.41334 3.55078 3.57556 3.71579 3.81237 3.87574 4.11532 4.12350 4.16959 4.19934 4.20595 4.24866 4.34069 4.37390 4.39515 4.46997 4.48847 4.51564 4.62304 4.63962 4.68332 4.76641 4.79308 4.81276 4.86652 4.97735 5.00484 5.01706 5.06865 5.14021 5.16491 5.19939 5.25106 5.32868 5.75896 6.06483 6.09857 6.20158 6.47730 6.79161 7.07023 7.51226 7.91741 8.99438 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016992 B = 0.003440 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.468728 B = 8137.733219 C = 8631.761727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.384 6.384 4 C 0.115 3.885 5 H 0.120 0.880 6 C 0.520 3.480 7 O -0.585 6.585 8 N -0.607 5.607 9 C 0.097 3.903 10 C -0.115 4.115 11 C 0.099 3.901 12 C 0.100 3.900 13 C 0.107 3.893 14 N -0.623 5.623 15 C -0.253 4.253 16 H 0.047 0.953 17 C -0.036 4.036 18 N -0.957 5.957 19 Si 0.948 3.052 20 H -0.259 1.259 21 H -0.310 1.310 22 H -0.260 1.260 23 C 0.109 3.891 24 C 0.051 3.949 25 O -0.359 6.359 26 C -0.176 4.176 27 C -0.141 4.141 28 C -0.185 4.185 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.263 0.737 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.029 0.971 47 H 0.149 0.851 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 -18.509 21.427 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.303 6.303 4 C 0.054 3.946 5 H 0.138 0.862 6 C 0.309 3.691 7 O -0.465 6.465 8 N -0.341 5.341 9 C -0.024 4.024 10 C -0.152 4.152 11 C 0.057 3.943 12 C -0.023 4.023 13 C -0.019 4.019 14 N -0.349 5.349 15 C -0.382 4.382 16 H 0.065 0.935 17 C -0.231 4.231 18 N -0.603 5.603 19 Si 0.775 3.225 20 H -0.185 1.185 21 H -0.238 1.238 22 H -0.184 1.184 23 C -0.016 4.016 24 C -0.026 4.026 25 O -0.277 6.277 26 C -0.195 4.195 27 C -0.178 4.178 28 C -0.222 4.222 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.144 0.856 46 H 0.048 0.952 47 H 0.166 0.834 48 H 0.113 0.887 49 H 0.140 0.860 50 H 0.124 0.876 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.742 -18.073 21.249 28.030 hybrid contribution 0.244 0.600 -1.524 1.656 sum -2.499 -17.473 19.725 26.470 Atomic orbital electron populations 1.21766 0.93206 1.03491 1.02272 1.22887 0.96241 0.82155 1.01634 1.88019 1.19160 1.28821 1.94316 1.21318 0.83401 0.96091 0.93768 0.86234 1.20978 0.80662 0.86624 0.80811 1.90699 1.49062 1.51048 1.55656 1.48516 1.06043 1.30803 1.48718 1.22515 0.83043 0.95663 1.01163 1.22724 0.98543 0.89873 1.04100 1.22266 0.92290 0.92777 0.86983 1.22384 0.95841 0.90369 0.93707 1.21882 0.97391 0.85369 0.97211 1.44513 1.81290 1.05050 1.04060 1.18773 1.21820 1.14620 0.82977 0.93516 1.25965 1.01351 1.01310 0.94434 1.69981 1.41460 1.49224 0.99613 0.85928 0.80921 0.79487 0.76173 1.18514 1.23845 1.18407 1.21795 0.98829 0.94362 0.86583 1.23100 0.96047 0.83175 1.00306 1.87658 1.84372 1.22843 1.32859 1.22810 1.01369 1.04709 0.90586 1.22987 0.99393 0.98221 0.97210 1.22800 1.03822 0.91483 1.04081 0.92070 0.93710 0.88411 0.92649 0.90427 0.87886 0.88238 0.86014 0.88027 0.93268 0.92951 0.93083 0.91715 0.92826 0.93352 0.91518 0.85553 0.95219 0.83374 0.88726 0.85974 0.87561 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 10.28 71.98 0.74 -1.56 16 2 C 0.05 0.76 5.96 71.98 0.43 1.19 16 3 O -0.38 -9.81 8.07 -129.99 -1.05 -10.86 16 4 C 0.12 2.59 2.45 29.85 0.07 2.66 16 5 H 0.12 1.87 7.64 -2.39 -0.02 1.85 16 6 C 0.52 17.30 6.88 87.66 0.60 17.90 16 7 O -0.59 -26.52 16.78 15.96 0.27 -26.25 16 8 N -0.61 -18.33 3.33 -812.53 -2.71 -21.04 16 9 C 0.10 1.84 6.16 86.76 0.53 2.37 16 10 C -0.11 -2.50 6.12 31.55 0.19 -2.31 16 11 C 0.10 3.29 0.83 -10.16 -0.01 3.28 16 12 C 0.10 3.84 5.85 86.56 0.51 4.35 16 13 C 0.11 4.34 3.05 86.01 0.26 4.61 16 14 N -0.62 -29.42 2.76 -698.83 -1.93 -31.35 16 15 C -0.25 -14.53 10.10 84.03 0.85 -13.69 16 16 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 17 C -0.04 -2.09 5.25 84.86 0.45 -1.65 16 18 N -0.96 -60.81 13.97 21.65 0.30 -60.51 16 19 Si 0.95 45.06 24.27 68.60 1.67 46.72 16 20 H -0.26 -11.09 6.49 99.48 0.65 -10.44 16 21 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 22 H -0.26 -11.76 6.72 99.48 0.67 -11.09 16 23 C 0.11 4.23 6.71 86.34 0.58 4.81 16 24 C 0.05 1.71 6.78 72.07 0.49 2.19 16 25 O -0.36 -11.65 10.28 -148.95 -1.53 -13.18 16 26 C -0.18 -3.00 4.92 -10.79 -0.05 -3.05 16 27 C -0.14 -2.14 9.75 30.60 0.30 -1.84 16 28 C -0.18 -3.93 9.80 30.59 0.30 -3.63 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.82 8.04 -2.39 -0.02 0.81 16 33 H 0.08 0.87 7.89 -2.39 -0.02 0.85 16 34 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 1.43 5.99 -2.39 -0.01 1.42 16 36 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.10 2.04 8.00 -2.39 -0.02 2.03 16 38 H 0.05 2.24 6.00 -2.39 -0.01 2.22 16 39 H 0.05 2.25 7.82 -2.39 -0.02 2.23 16 40 H 0.05 1.97 6.86 -2.39 -0.02 1.95 16 41 H 0.06 2.88 4.51 -2.39 -0.01 2.87 16 42 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 2.62 7.96 -2.39 -0.02 2.60 16 45 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.03 1.13 6.25 -2.39 -0.01 1.12 16 47 H 0.15 1.62 6.51 -2.39 -0.02 1.60 16 48 H 0.09 1.62 6.51 -2.39 -0.02 1.61 16 49 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -81.90 388.43 2.08 -79.82 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.82 Total: 21.00 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.24 Total: 15.64 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.33 Total: -112.90 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -2.31 Total: -50.29 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.72 kcal Total: -81.90 2.08 -79.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734136697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.368 kcal (2) G-P(sol) polarization free energy of solvation -81.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds