Wall clock time and date at job start Tue Mar 31 2020 21:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 119.99795 * 2 1 4 4 N 1.34768 * 120.00096 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99992 * 176.53929 * 4 2 1 6 6 H 1.08994 * 109.47109 * 33.76213 * 5 4 2 7 7 C 1.50696 * 109.47059 * 273.75745 * 5 4 2 8 8 O 1.20825 * 120.00329 * 339.99989 * 7 5 4 9 9 O 1.34229 * 119.99839 * 160.00017 * 7 5 4 10 10 C 1.45200 * 117.00192 * 179.97438 * 9 7 5 11 11 C 1.53076 * 109.45141 * 89.79072 * 10 9 7 12 12 C 1.53196 * 109.29495 * 181.24657 * 11 10 9 13 13 N 1.46924 * 108.89032 * 305.57586 * 12 11 10 14 14 C 1.36932 * 120.62951 * 233.51631 * 13 12 11 15 15 H 1.07998 * 120.00043 * 147.25079 * 14 13 12 16 16 C 1.38816 * 119.99943 * 327.25144 * 14 13 12 17 17 N 1.31618 * 120.00053 * 347.72588 * 16 14 13 18 18 Si 1.86801 * 119.99993 * 167.72879 * 16 14 13 19 19 H 1.48504 * 109.47081 * 59.99848 * 18 16 14 20 20 H 1.48501 * 109.47160 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46997 * 299.99596 * 18 16 14 22 22 C 1.46924 * 118.73945 * 53.53895 * 13 12 11 23 23 C 1.53038 * 109.46320 * 209.99770 * 10 9 7 24 24 C 1.53003 * 109.46924 * 153.75906 * 5 4 2 25 25 C 1.54267 * 110.03345 * 56.51449 * 24 5 4 26 26 C 1.54960 * 104.15964 * 217.13683 * 25 24 5 27 27 C 1.54888 * 102.77869 * 37.88750 * 26 25 24 28 28 C 1.53876 * 110.03112 * 299.29361 * 24 5 4 29 29 H 1.09004 * 109.47193 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47233 * 299.99673 * 1 2 3 31 31 H 1.09002 * 109.47383 * 59.99692 * 1 2 3 32 32 H 0.96997 * 120.00239 * 356.54110 * 4 2 1 33 33 H 1.08993 * 109.45940 * 329.97607 * 10 9 7 34 34 H 1.08994 * 109.39640 * 61.36674 * 11 10 9 35 35 H 1.09010 * 109.62101 * 301.25731 * 11 10 9 36 36 H 1.09000 * 109.58324 * 185.71844 * 12 11 10 37 37 H 1.08996 * 109.58491 * 65.43670 * 12 11 10 38 38 H 0.96998 * 119.99612 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.59054 * 66.17534 * 22 13 12 40 40 H 1.09001 * 109.58835 * 186.45873 * 22 13 12 41 41 H 1.09009 * 109.49144 * 58.66512 * 23 10 9 42 42 H 1.08995 * 109.49735 * 298.57118 * 23 10 9 43 43 H 1.09003 * 110.01428 * 177.90514 * 24 5 4 44 44 H 1.08996 * 110.48268 * 335.78195 * 25 24 5 45 45 H 1.09003 * 110.48604 * 98.42804 * 25 24 5 46 46 H 1.09007 * 110.72266 * 279.57677 * 26 25 24 47 47 H 1.08996 * 110.77101 * 156.22404 * 26 25 24 48 48 H 1.09003 * 110.48782 * 203.40732 * 27 26 25 49 49 H 1.08997 * 110.60125 * 80.82144 * 27 26 25 50 50 H 1.09003 * 110.03505 * 238.56864 * 28 24 5 51 51 H 1.08998 * 110.03526 * 359.95517 * 28 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6439 -1.1682 -0.0771 6 1 4.0359 -0.2976 0.4486 7 6 4.0713 -1.1177 -1.5213 8 8 3.2989 -1.4426 -2.3917 9 8 5.3102 -0.7117 -1.8407 10 6 5.6532 -0.6886 -3.2514 11 6 5.2988 0.6793 -3.8399 12 6 5.6332 0.6893 -5.3349 13 7 7.0389 0.2996 -5.5105 14 6 7.8986 1.0917 -6.2237 15 1 8.9417 1.1411 -5.9483 16 6 7.4293 1.8313 -7.3006 17 7 6.2299 1.5950 -7.7885 18 14 8.5000 3.1618 -8.0574 19 1 9.7602 2.5572 -8.5592 20 1 7.7741 3.7995 -9.1851 21 1 8.8171 4.1860 -7.0299 22 6 7.5046 -0.9563 -4.9068 23 6 7.1526 -0.9469 -3.4159 24 6 4.1875 -2.4429 0.5714 25 6 3.5725 -3.6846 -0.1069 26 6 3.3655 -4.6880 1.0557 27 6 2.9197 -3.7728 2.2230 28 6 3.7731 -2.4990 2.0522 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6972 -2.0064 0.0498 33 1 5.0918 -1.4628 -3.7743 34 1 5.8764 1.4522 -3.3328 35 1 4.2345 0.8717 -3.7039 36 1 5.4785 1.6904 -5.7372 37 1 4.9898 -0.0182 -5.8579 38 1 5.9022 2.1115 -8.5413 39 1 7.0137 -1.7995 -5.3928 40 1 8.5843 -1.0423 -5.0290 41 1 7.4059 -1.9117 -2.9762 42 1 7.7147 -0.1592 -2.9143 43 1 5.2739 -2.4707 0.4863 44 1 2.6176 -3.4334 -0.5683 45 1 4.2593 -4.0941 -0.8476 46 1 4.2993 -5.1957 1.2979 47 1 2.5854 -5.4085 0.8101 48 1 3.1301 -4.2472 3.1815 49 1 1.8591 -3.5353 2.1406 50 1 4.6583 -2.5549 2.6859 51 1 3.1854 -1.6177 2.3091 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119348649.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:26 Heat of formation + Delta-G solvation = -140.019830 kcal Electronic energy + Delta-G solvation = -31030.631151 eV Core-core repulsion = 26928.908655 eV Total energy + Delta-G solvation = -4101.722496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.20452 -40.75700 -39.39044 -38.85352 -37.34470 -35.44876 -34.64070 -32.45638 -31.97814 -31.55001 -29.86839 -29.64066 -27.57108 -26.53505 -24.12166 -23.97906 -22.42579 -22.17708 -21.16380 -21.09300 -20.64423 -18.93188 -18.87328 -18.20315 -17.99762 -17.13661 -16.96757 -16.81013 -16.34410 -16.09099 -15.76473 -15.47369 -15.30676 -15.01626 -14.71308 -14.65298 -14.40682 -14.20161 -14.18706 -14.03676 -13.33519 -13.30875 -13.10303 -13.06688 -12.89405 -12.64145 -12.52569 -12.43926 -12.18520 -12.03661 -12.01537 -11.94920 -11.92831 -11.87457 -11.68254 -11.63006 -11.53164 -11.35679 -11.13883 -11.11147 -10.60782 -10.39260 -8.73335 -7.93473 -5.46447 1.01724 1.24542 1.45154 1.48372 1.54896 1.73129 2.17198 2.47299 3.23431 3.34647 3.43975 3.53809 3.62226 3.72110 3.76598 3.81533 3.84681 4.08958 4.15582 4.23234 4.31956 4.45104 4.50101 4.52113 4.55471 4.60985 4.62294 4.65468 4.71194 4.75877 4.81714 4.84709 4.90138 4.93411 5.00993 5.02378 5.12025 5.19239 5.20333 5.27585 5.29647 5.30528 5.39063 5.45121 5.51726 5.57513 5.60374 6.35025 6.36055 6.62698 7.07233 7.07894 7.74669 8.30491 9.14093 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.002742 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.305309 B =10209.416308 C =11178.490687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.504 3.496 3 O -0.595 6.595 4 N -0.695 5.695 5 C 0.165 3.835 6 H 0.115 0.885 7 C 0.444 3.556 8 O -0.529 6.529 9 O -0.354 6.354 10 C 0.107 3.893 11 C -0.140 4.140 12 C 0.191 3.809 13 N -0.610 5.610 14 C -0.270 4.270 15 H 0.073 0.927 16 C -0.049 4.049 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.270 1.270 20 H -0.294 1.294 21 H -0.277 1.277 22 C 0.144 3.856 23 C -0.113 4.113 24 C -0.089 4.089 25 C -0.131 4.131 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.113 4.113 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.421 0.579 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.044 0.956 36 H 0.056 0.944 37 H -0.003 1.003 38 H 0.251 0.749 39 H 0.019 0.981 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.801 -13.731 24.416 29.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.294 3.706 3 O -0.475 6.475 4 N -0.350 5.350 5 C 0.057 3.943 6 H 0.133 0.867 7 C 0.286 3.714 8 O -0.418 6.418 9 O -0.270 6.270 10 C 0.053 3.947 11 C -0.179 4.179 12 C 0.064 3.936 13 N -0.333 5.333 14 C -0.400 4.400 15 H 0.090 0.910 16 C -0.245 4.245 17 N -0.583 5.583 18 Si 0.801 3.199 19 H -0.195 1.195 20 H -0.221 1.221 21 H -0.203 1.203 22 C 0.019 3.981 23 C -0.152 4.152 24 C -0.108 4.108 25 C -0.169 4.169 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.151 4.151 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.016 0.984 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.085 0.915 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.656 -13.019 23.969 28.935 hybrid contribution 0.055 0.734 -1.424 1.603 sum -9.601 -12.286 22.545 27.412 Atomic orbital electron populations 1.21888 0.87396 1.06713 1.06125 1.21844 0.92759 0.82639 0.73324 1.90749 1.72057 1.33228 1.51454 1.45912 1.05046 1.10033 1.74056 1.20562 0.83088 1.03571 0.87096 0.86681 1.24995 0.80067 0.72254 0.94114 1.90620 1.53399 1.45883 1.51862 1.86538 1.32691 1.77406 1.30333 1.22621 0.97689 0.97356 0.77058 1.22417 0.99399 0.97043 0.99075 1.20363 0.84772 0.98893 0.89553 1.44290 1.07041 1.21124 1.60878 1.19505 0.92729 1.20969 1.06804 0.90975 1.26051 0.98436 1.03186 0.96781 1.70154 1.19929 1.42222 1.25978 0.85259 0.78238 0.79015 0.77416 1.19484 1.22061 1.20302 1.21069 0.99018 0.87537 0.90488 1.22051 0.91552 1.03224 0.98377 1.22115 1.01750 0.90211 0.96708 1.22556 1.00705 0.95110 0.98534 1.22487 1.02124 0.97032 0.93803 1.22383 0.99865 0.94556 0.98932 1.22177 1.01025 0.99334 0.92533 0.87264 0.86795 0.88815 0.73924 0.91646 0.92104 0.93720 0.92605 0.98444 0.93954 0.96329 0.90542 0.88563 0.91069 0.88169 0.91530 0.92390 0.90842 0.90389 0.90190 0.90641 0.90002 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 10.39 71.24 0.74 -1.31 16 2 C 0.50 11.58 7.91 87.66 0.69 12.27 16 3 O -0.59 -20.17 16.72 -3.04 -0.05 -20.22 16 4 N -0.69 -13.21 3.85 -446.11 -1.72 -14.92 16 5 C 0.16 3.73 2.07 44.24 0.09 3.82 16 6 H 0.12 2.86 7.49 -2.39 -0.02 2.84 16 7 C 0.44 14.22 6.57 71.23 0.47 14.69 16 8 O -0.53 -19.72 15.77 21.97 0.35 -19.38 16 9 O -0.35 -12.30 9.88 -51.41 -0.51 -12.80 16 10 C 0.11 4.18 2.41 30.63 0.07 4.25 16 11 C -0.14 -6.31 5.73 30.69 0.18 -6.14 16 12 C 0.19 10.09 5.24 86.36 0.45 10.54 16 13 N -0.61 -32.03 2.98 -699.11 -2.08 -34.11 16 14 C -0.27 -15.19 9.55 84.04 0.80 -14.39 16 15 H 0.07 3.87 7.86 -2.91 -0.02 3.85 16 16 C -0.05 -2.80 5.00 84.86 0.42 -2.38 16 17 N -0.94 -57.43 11.26 21.65 0.24 -57.19 16 18 Si 0.97 45.72 29.57 68.60 2.03 47.75 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.14 6.08 6.52 86.36 0.56 6.64 16 23 C -0.11 -3.99 5.74 30.67 0.18 -3.81 16 24 C -0.09 -1.36 2.78 -10.07 -0.03 -1.39 16 25 C -0.13 -1.91 5.54 31.69 0.18 -1.74 16 26 C -0.12 -1.07 6.91 31.91 0.22 -0.85 16 27 C -0.12 -0.86 6.83 31.67 0.22 -0.65 16 28 C -0.11 -1.16 6.20 31.32 0.19 -0.97 16 29 H 0.11 0.65 7.92 -2.38 -0.02 0.63 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.42 5.40 6.61 -92.71 -0.61 4.79 16 33 H 0.07 2.71 7.16 -2.39 -0.02 2.69 16 34 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 36 H 0.06 3.30 6.27 -2.39 -0.01 3.28 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 3.01 7.93 -2.39 -0.02 2.99 16 41 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 42 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 43 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.04 6.13 -2.39 -0.01 1.02 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.07 0.77 7.40 -2.39 -0.02 0.76 16 Total: -1.00 -77.57 401.94 4.00 -73.56 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.30 Total: 18.71 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: 5.44 Total: 18.60 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.55 Total: -106.22 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.21 Total: -52.40 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -77.57 4.00 -73.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119348649.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.456 kcal (2) G-P(sol) polarization free energy of solvation -77.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds